View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_32 (Length: 401)

Name: NF16757_low_32
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_32
NF16757_low_32
[»] chr4 (2 HSPs)
chr4 (3-383)||(48567123-48567503)
chr4 (294-355)||(23440203-23440266)
[»] chr3 (2 HSPs)
chr3 (121-383)||(31424444-31424704)
chr3 (182-252)||(24712975-24713044)
[»] chr8 (2 HSPs)
chr8 (185-382)||(17819481-17819675)
chr8 (271-320)||(31503122-31503171)
[»] chr2 (3 HSPs)
chr2 (273-356)||(1946006-1946091)
chr2 (151-348)||(1945795-1945995)
chr2 (283-354)||(11199759-11199829)
[»] chr1 (1 HSPs)
chr1 (187-320)||(9613087-9613220)
[»] chr5 (2 HSPs)
chr5 (186-223)||(25657829-25657866)
chr5 (271-320)||(26367774-26367823)
[»] scaffold0050 (1 HSPs)
scaffold0050 (109-153)||(37112-37156)
[»] chr7 (1 HSPs)
chr7 (271-315)||(15126857-15126901)
[»] chr6 (1 HSPs)
chr6 (187-227)||(20500283-20500323)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 3 - 383
Target Start/End: Original strand, 48567123 - 48567503
Alignment:
Q  3 ccgccatagttagcaatacattcaattatccctaaacattgaacttatacgacttttgaacgacattttttgtttgtcgtatactggcggttatcaacaa 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48567123 ccgccgtagttagcaatacattcaattatccctaaacattgaacttataagacttttgaacgacattttttgtttgtcgtatactggcggttatcaacaa 48567222  T
Q  103 cttcggcaaaatttattaaaaaacttgatcactgctcaaaacgaacagagagaccggtatcagatattacataatgaatgcgtcgtatataggcagaaca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  48567223 cttcggcaaaatttattaaaaaacttgatcactgctcaaaacgaacagagagaccggtatcagatattacagaatgaatgcgtcgtatataggcggaaca 48567322  T
Q  203 cctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccattaacacctaaagagaacaacaatcaccaaaaccaacttcacca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  48567323 cctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctaccttaacacctaaagagaacaacaatcaccaaaaccaacttcacca 48567422  T
Q  303 cctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacccctttcgctcactgctcaccccaaaaaac 383  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48567423 cctaaatcaaacttcatcattaaacggcaactgaaaacgaaatccataaacccctttcgctcgctgctcaccccaaaaaac 48567503  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 23440203 - 23440266
Alignment:
Q  294 acttcaccacctaaatcaaacttcatcattaaacggcaacttaa--aacgaaatccataaaccc 355  Q
    |||||||||||||||||||||| |||||| ||||| | ||| ||  ||||||||||||||||||    
T  23440203 acttcaccacctaaatcaaactccatcataaaacgaccactgaaacaacgaaatccataaaccc 23440266  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 121 - 383
Target Start/End: Complemental strand, 31424704 - 31424444
Alignment:
Q  121 aaaaacttgatcactgctcaaaacgaacagagagaccggtatcagatattacataatgaatgcgtcgtatataggcagaacacctaaaatcaacaccata 220  Q
    |||||||||||| ||| |||| ||||||| |||  || ||||||||  |||||| || ||  |||||||||||||| ||||| | ||| | |||||||||    
T  31424704 aaaaacttgatccctgttcaagacgaacaaaga--ccagtatcagaggttacatgataaagacgtcgtatataggcggaacatccaaattaaacaccata 31424607  T
Q  221 aaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcat 319  Q
    ||| |||  |||||  ||||||||||||||||||| | || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  31424606 aaatacacaaaacaatcatcacctaaccaagatctactttcaacacccaaa-agaacaacaatcaccaaaaccaacttcaccacctaaatcaaactccat 31424508  T
Q  320 cattaaacggcaacttaaaacgaaatccata-aacccctttcgctcactgctcaccccaaaaaac 383  Q
    || ||||| || | | || |||||||||||| | |||| ||||||| || |||||||||||||||    
T  31424507 ca-taaacagccattgaacacgaaatccatacaccccccttcgctcgctactcaccccaaaaaac 31424444  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 24713044 - 24712975
Alignment:
Q  182 gcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaaga 252  Q
    |||||||||||||||  ||||| |||||  ||||||||||||||||||| ||||| |||||||||||||||    
T  24713044 gcgtcgtatataggcgaaacac-taaaaaaaacaccataaaagacattatacaccaatcacctaaccaaga 24712975  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 382
Target Start/End: Original strand, 17819481 - 17819675
Alignment:
Q  185 tcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatc 283  Q
    ||||||||| || ||||||||||||  ||| ||||||||||||| | ||||| ||||||||||||| | || | || |||||| | | |||||| ||| |    
T  17819481 tcgtatataagcggaacacctaaaaa-aactccataaaagacatcatacaccaatcacctaaccaaaacctaccttcaacacccata-agaaca-caacc 17819577  T
Q  284 accaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacccctttcgctcactgctcaccccaaaaaa 382  Q
    |||||||||||||||||||||||||||||||| ||||   ||||  | ||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  17819578 accaaaaccaacttcaccacctaaatcaaactccatcgc-aaacaaccactgaaaacgaaatccataaacccccttcgctcgctgctcaccccaaaaaa 17819675  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 31503122 - 31503171
Alignment:
Q  271 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatc 320  Q
    |||||||| || |||||||||||||||| |||||||||||||||| ||||    
T  31503122 gagaacaagaaccaccaaaaccaacttcgccacctaaatcaaactccatc 31503171  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 356
Target Start/End: Complemental strand, 1946091 - 1946006
Alignment:
Q  273 gaacaacaatcaccaaaac-caacttcaccacctaaatcaaacttcatcattaaacggcaact-taaaacgaaatccataaacccc 356  Q
    ||||||||| ||||||||| | |||||||||||||||||||||| |||||| ||||||| |||  |||||||||||||||||||||    
T  1946091 gaacaacaaccaccaaaactccacttcaccacctaaatcaaactccatcataaaacggccactaaaaaacgaaatccataaacccc 1946006  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 348
Target Start/End: Original strand, 1945795 - 1945995
Alignment:
Q  151 agagaccggtatcagatattacataatgaatgcgtcgtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaa 250  Q
    ||||||||||| |  | |||||| ||| |||| ||| ||||||||| ||||||| ||||  || |||||||||||||  | ||| |||||||||||||||    
T  1945795 agagaccggtaaccaagattacaaaataaatgtgtcatatataggc-gaacacccaaaagaaataccataaaagacacaatacaaccatcacctaaccaa 1945893  T
Q  251 gatctccatt-aacacctaaagagaacaacaatcaccaaaac-caacttcaccacctaaatcaaa--cttcatcattaaacggcaact-taaaacgaaat 345  Q
     | || | || |||||  |||  ||||||||| ||||||||| | ||||||||||||||||||||  || |||||| ||||||| |||  ||||||||||    
T  1945894 aacctactttcaacactcaaac-gaacaacaaccaccaaaactccacttcaccacctaaatcaaactctccatcataaaacggccactaaaaaacgaaat 1945992  T
Q  346 cca 348  Q
    |||    
T  1945993 cca 1945995  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 11199759 - 11199829
Alignment:
Q  283 caccaaaaccaacttcaccacctaaatcaaacttcatcattaaacggcaacttaaaacgaaatccataaacc 354  Q
    ||||||||||||||||||| ||||||||||||| ||||   |||| || ||| ||||| |||||||||||||    
T  11199759 caccaaaaccaacttcaccgcctaaatcaaactccatcgcgaaac-gccactaaaaacaaaatccataaacc 11199829  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 320
Target Start/End: Original strand, 9613087 - 9613220
Alignment:
Q  187 gtatataggcagaacacctaaaatcaacaccataaaagacattaaacacccatcacctaaccaagatctccatt-aacacctaaagagaacaacaatcac 285  Q
    |||||||||| ||  ||| ||||  |||||||||||| |||  |||||||||||| |||||||||| || | || |||||| ||  |||||||  | |||    
T  9613087 gtatataggcggatgaccaaaaagaaacaccataaaatacacaaaacacccatcaactaaccaagacctaccttcaacacccaat-agaacaatgaccac 9613185  T
Q  286 caaaaccaacttcaccacctaaatcaaacttcatc 320  Q
    |||| ||||||||||||||||||||||||||||||    
T  9613186 caaacccaacttcaccacctaaatcaaacttcatc 9613220  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 25657829 - 25657866
Alignment:
Q  186 cgtatataggcagaacacctaaaatcaacaccataaaa 223  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25657829 cgtatataggcagaacacctaaaataaacaccataaaa 25657866  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 26367774 - 26367823
Alignment:
Q  271 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaacttcatc 320  Q
    ||||||||||| || |||| ||||||||||||||||| ||||||| ||||    
T  26367774 gagaacaacaaccatcaaatccaacttcaccacctaagtcaaactccatc 26367823  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 37156 - 37112
Alignment:
Q  109 caaaatttattaaaaaacttgatcactgctcaaaacgaacagaga 153  Q
    |||||||||||||| ||| ||||| |||||||| |||||||||||    
T  37156 caaaatttattaaacaacctgatccctgctcaagacgaacagaga 37112  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 15126857 - 15126901
Alignment:
Q  271 gagaacaacaatcaccaaaaccaacttcaccacctaaatcaaact 315  Q
    ||||||||||| ||| |||| |||| |||||||||||||||||||    
T  15126857 gagaacaacaaccacaaaaaacaacatcaccacctaaatcaaact 15126901  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 20500323 - 20500283
Alignment:
Q  187 gtatataggcagaacacctaaaatcaacaccataaaagaca 227  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  20500323 gtatataggcggaacacccaaaataaacaccataaaagaca 20500283  T

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