View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_33 (Length: 400)

Name: NF16757_low_33
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_33
NF16757_low_33
[»] chr5 (8 HSPs)
chr5 (1-384)||(29712643-29713026)
chr5 (86-316)||(29687640-29687870)
chr5 (95-336)||(29695721-29695962)
chr5 (222-291)||(42562726-42562795)
chr5 (225-287)||(1812043-1812105)
chr5 (7-47)||(29696064-29696104)
chr5 (8-40)||(42562515-42562547)
chr5 (225-286)||(178638-178699)
[»] chr1 (5 HSPs)
chr1 (188-286)||(24309796-24309894)
chr1 (225-300)||(24322067-24322142)
chr1 (162-287)||(24340032-24340157)
chr1 (228-286)||(24415456-24415514)
chr1 (225-273)||(24366787-24366835)
[»] chr8 (5 HSPs)
chr8 (164-287)||(15348480-15348603)
chr8 (224-310)||(12199902-12199988)
chr8 (224-310)||(12444330-12444416)
chr8 (224-310)||(12194896-12194982)
chr8 (224-310)||(12439324-12439410)
[»] chr4 (35 HSPs)
chr4 (189-304)||(48156789-48156904)
chr4 (176-287)||(48862859-48862973)
chr4 (164-283)||(7774166-7774285)
chr4 (162-287)||(48735647-48735775)
chr4 (164-281)||(7877344-7877461)
chr4 (192-280)||(7904657-7904745)
chr4 (191-301)||(45366582-45366695)
chr4 (192-303)||(48148047-48148161)
chr4 (189-304)||(45372419-45372534)
chr4 (197-280)||(49044599-49044682)
chr4 (191-283)||(7771026-7771118)
chr4 (221-281)||(49048993-49049053)
chr4 (189-283)||(7907947-7908041)
chr4 (224-286)||(33134223-33134285)
chr4 (189-287)||(48891027-48891125)
chr4 (190-287)||(7765239-7765336)
chr4 (225-285)||(48870162-48870222)
chr4 (225-285)||(48885848-48885908)
chr4 (224-283)||(7813102-7813161)
chr4 (224-283)||(7822591-7822650)
chr4 (189-280)||(49041500-49041591)
chr4 (191-283)||(7789711-7789803)
chr4 (193-280)||(7238086-7238173)
chr4 (224-283)||(7800259-7800318)
chr4 (224-279)||(33133663-33133718)
chr4 (176-287)||(48170935-48171049)
chr4 (192-277)||(48875474-48875559)
chr4 (184-280)||(37827351-37827447)
chr4 (222-285)||(48898342-48898405)
chr4 (228-283)||(48902572-48902627)
chr4 (8-45)||(7771261-7771298)
chr4 (190-283)||(7786065-7786158)
chr4 (8-45)||(7904890-7904927)
chr4 (8-40)||(7774010-7774042)
chr4 (8-40)||(7789951-7789983)
[»] scaffold0508 (1 HSPs)
scaffold0508 (188-287)||(11880-11979)
[»] chr6 (1 HSPs)
chr6 (185-287)||(21015394-21015496)
[»] chr3 (5 HSPs)
chr3 (224-287)||(11024934-11024997)
chr3 (224-283)||(11006359-11006418)
chr3 (224-287)||(11015922-11015985)
chr3 (224-283)||(47452304-47452363)
chr3 (2-46)||(47452085-47452129)


Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 29712643 - 29713026
Alignment:
Q  1 cacaactcaaaagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagactgtggaagcaaaaaattaatattcaatgaataggaagcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712643 cacaactcaaaagtataaaccctctacacgaacctttaatatcaagttgtgtaaaagactgtggaagcaaaaaattaatattcaatgaataggaagcact 29712742  T
Q  101 atcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagttgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29712743 atcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcggtaagttgaaaa 29712842  T
Q  201 tgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712843 tgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 29712942  T
Q  301 gaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatattgtttc 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712943 gaatgattaactcaatagatagatattgctctgtcttcttcatcgtctccattcacacgtttcctcctttgccaatattgtttc 29713026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 86 - 316
Target Start/End: Complemental strand, 29687870 - 29687640
Alignment:
Q  86 tgaataggaagcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttg 185  Q
    |||||| ||||||||||||||||  || |||||||| ||||| |||||||||||||| |||| |||| |||| || ||||||||||||| |||||  |||    
T  29687870 tgaataagaagcactatcatcgtgaagcgatgtttcaaaatctatagatagagattcaagatctggatttatgaacagaattctaggagtgtgtgcattg 29687771  T
Q  186 gcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 285  Q
    || |||||||||||||| |||||||| || | || |||||| || |||||||||||  |||||||||| |||||||| || |||||||||||||| ||||    
T  29687770 gcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggta 29687671  T
Q  286 acattaaaaggatttgaatgattaactcaat 316  Q
    || ||| ||||||||||||||| || |||||    
T  29687670 actttagaaggatttgaatgatcaattcaat 29687640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 95 - 336
Target Start/End: Complemental strand, 29695962 - 29695721
Alignment:
Q  95 agcactatcatcgtagagtgatgtttccaaatcaatagatagagattccagatttggagttatcaatagaattctaggagcgtgtgttttggcagtaagt 194  Q
    ||||||||||||||  || |||  ||| | ||| |||||||||||||  |||| |||||||||||| | |||||||   | ||||||   ||  ||||||    
T  29695962 agcactatcatcgttaagcgataattcaagatctatagatagagattgaagatatggagttatcaacataattctattcgtgtgtgtagcggtggtaagt 29695863  T
Q  195 tgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaa 294  Q
    ||||||||||||||||| || | || |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||| |||| |    
T  29695862 tgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaata 29695763  T
Q  295 ggatttgaatgattaactcaatagatagatattgctctgtct 336  Q
    ||||||||||||||||||||| ||  ||||||  ||||||||    
T  29695762 ggatttgaatgattaactcaaaaggaagatatgtctctgtct 29695721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 42562726 - 42562795
Alignment:
Q  222 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacatta 291  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42562726 tgagagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaacatta 42562795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 1812105 - 1812043
Alignment:
Q  225 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 287  Q
    ||||||||||||||||||||||||||||| || ||| |||| || ||| ||||||| ||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaac 1812043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 29696104 - 29696064
Alignment:
Q  7 tcaaaagtataaaccctctacacgaacctttaatatcaagt 47  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  29696104 tcaaaagtataaagcctctacacgaacctttaaaatcaagt 29696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 42562515 - 42562547
Alignment:
Q  8 caaaagtataaaccctctacacgaacctttaat 40  Q
    |||||||||||||||||||||||||||||||||    
T  42562515 caaaagtataaaccctctacacgaacctttaat 42562547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  225 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 286  Q
    ||||| ||||| |||||  |||||||||| || |||||||||||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 24309894 - 24309796
Alignment:
Q  188 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 286  Q
    |||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  24309894 agtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  225 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggattt 300  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||| ||| ||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 287
Target Start/End: Complemental strand, 24340157 - 24340032
Alignment:
Q  162 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttga 261  Q
    ||||||||| ||| |||||||   ||||||| |||||| ||||||||||| || | |   | ||||||||| ||||||||| ||||||||||  | ||||    
T  24340157 agaattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttga 24340058  T
Q  262 aacgaataagagacttcaccggtaac 287  Q
    |||||||||||||||| |||||||||    
T  24340057 aacgaataagagacttaaccggtaac 24340032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 24415514 - 24415456
Alignment:
Q  228 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 286  Q
    ||||||||||||||  |||||| |||||| |||||||||||||||||||| ||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  225 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagag 273  Q
    |||||||||||||||||| |||| ||||| || ||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 15348603 - 15348480
Alignment:
Q  164 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 263  Q
    ||||||| ||| |||||||  ||| |||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  264 cgaataagagacttcaccggtaac 287  Q
    || |||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaac 15348480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 12199988 - 12199902
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 310  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12199902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 12444416 - 12444330
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 310  Q
    ||||||||||||||||||| |||||||||| || |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12444330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 12194982 - 12194896
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 310  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12194896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 12439410 - 12439324
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 310  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 12439324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 304
Target Start/End: Original strand, 48156789 - 48156904
Alignment:
Q  189 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 288  Q
    |||| ||||||||| |||||||| |||| ||  |  |||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||     
T  48156789 gtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaacc 48156888  T
Q  289 ttaaaaggatttgaat 304  Q
     |||||||||||||||    
T  48156889 ataaaaggatttgaat 48156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 48862973 - 48862859
Alignment:
Q  176 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 272  Q
    |||||||  ||||||||||||||||||||||||||| || | || ||  ||||||||||||||||||||  |||| |||||||| |||||||||||||||    
T  48862973 gtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataaga 48862874  T
Q  273 gacttcaccggtaac 287  Q
    |||||||||||||||    
T  48862873 gacttcaccggtaac 48862859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 7774166 - 7774285
Alignment:
Q  164 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 263  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| ||||||||| || ||||||    
T  7774166 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T
Q  264 cgaataagagacttcaccgg 283  Q
     |||||||||||||||||||    
T  7774266 tgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 48735647 - 48735775
Alignment:
Q  162 agaattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattga---gagataagagaaaaccataacttacaaacgcact 258  Q
    ||||||||| ||| ||| ||| |||| |||| || ||||||||||||||| |||||||  | |   |||||||||||||||||  |||||||||| || |    
T  48735647 agaattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatt 48735746  T
Q  259 tgaaacgaataagagacttcaccggtaac 287  Q
    |||||||||||||||||||||||||||||    
T  48735747 tgaaacgaataagagacttcaccggtaac 48735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 7877461 - 7877344
Alignment:
Q  164 aattctaggagcgtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 263  Q
    ||||||||||| ||| ||| |||  || |||||||||||||||||||| ||||  |  | |||||||||||||||||||| |||||||| ||| ||||||    
T  7877461 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 7877362  T
Q  264 cgaataagagacttcacc 281  Q
    || |||||||||||||||    
T  7877361 cgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 7904745 - 7904657
Alignment:
Q  192 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 280  Q
    |||||||||||||||||||| || | ||  | |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 45366582 - 45366695
Alignment:
Q  191 aagttgaaaatgtgaatttgcgaaatcagatt---gagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 287  Q
    ||||||||||||||||||||| || |  || |   |||||||||||||||||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  288 attaaaaggatttg 301  Q
     |||  ||||||||    
T  45366682 cttagtaggatttg 45366695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 48148047 - 48148161
Alignment:
Q  192 agttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 288  Q
    |||| |||||||||||||||||| | || ||  ||||||||||||||||||||  ||||||| || || ||||||||||||||||||||||| ||||||     
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  289 ttaaaaggatttgaa 303  Q
    || ||||||||||||    
T  48148147 ttgaaaggatttgaa 48148161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 304
Target Start/End: Original strand, 45372419 - 45372534
Alignment:
Q  189 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaaca 288  Q
    |||| |||||||||||||||||| |||| ||  | |||||||| |||||||||  |||||||||| || |||||||| ||||||||||||||||| |||     
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  289 ttaaaaggatttgaat 304  Q
    |||  || ||||||||    
T  45372519 ttagtagaatttgaat 45372534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 49044599 - 49044682
Alignment:
Q  197 aaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 280  Q
    ||||||||||||||| || |  | ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||    
T  49044599 aaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcac 49044682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 7771118 - 7771026
Alignment:
Q  191 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||||||||||||||| | || | ||  | ||||||||||||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 49048993 - 49049053
Alignment:
Q  221 ttgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcacc 281  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||    
T  49048993 ttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 7908041 - 7907947
Alignment:
Q  189 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||||||||||||||||||| ||||  |    ||||||||||||||||||| |||||| |||  ||||||||||  ||||||||||||||||    
T  7908041 gtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccgg 7907947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 33134223 - 33134285
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaa 286  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 48891125 - 48891027
Alignment:
Q  189 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 287  Q
    |||||||||||||| |||||||| |||| ||  |  |||| ||||||||||||  ||||||||||||| |||||||| ||||||||||| |||| ||||    
T  48891125 gtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataac 48891027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 7765336 - 7765239
Alignment:
Q  190 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 287  Q
    ||||||| |||||||||||||| || | ||  | |||||||| |||||||||||||||||||| ||||||||||   |  ||||||||||||||||||    
T  7765336 taagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaac 7765239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 48870222 - 48870162
Alignment:
Q  225 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 285  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48870162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 48885908 - 48885848
Alignment:
Q  225 gagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 285  Q
    ||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||||||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggta 48885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 7813161 - 7813102
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 7822650 - 7822591
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7822591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 49041500 - 49041591
Alignment:
Q  189 gtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 280  Q
    ||||||| |||||| |||||||| ||||  |  | ||||||||||||||||||  |||| |||||||| ||||||| |||||||||||||||    
T  49041500 gtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 7789803 - 7789711
Alignment:
Q  191 aagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||||||||||||||| | || | ||  |  ||||||| |||||||||  ||||||||||||| |||||||  |||||||||||||||||    
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccgg 7789711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 7238086 - 7238173
Alignment:
Q  193 gttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 280  Q
    |||| |||||||||||||| || | ||  | ||||||||||||||||||  |||||||||| || |||||||  ||||||||||||||    
T  7238086 gttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcac 7238173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 7800318 - 7800259
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||| ||||||||||||| | |||||||| ||||||||||| |||||| ||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccgg 7800259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 33133718 - 33133663
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttca 279  Q
    |||||||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttca 33133663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 48170935 - 48171049
Alignment:
Q  176 gtgtgttttggcagtaagttgaaaatgtgaatttgcgaaatcag-at--tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataaga 272  Q
    |||||||| ||| |||| ||||||||| |||||||| || | || ||  ||||||||||||| ||||||  |||||||||| || |||||||| | ||||    
T  48170935 gtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaaga 48171034  T
Q  273 gacttcaccggtaac 287  Q
    |||||||||| ||||    
T  48171035 gacttcaccgataac 48171049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 48875559 - 48875474
Alignment:
Q  192 agttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagactt 277  Q
    |||||||||||||||||||  ||||  | ||  ||||| |||||||||||  |||| |||||||| ||||||||||| ||||||||    
T  48875559 agttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagactt 48875474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 37827351 - 37827447
Alignment:
Q  184 tggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 280  Q
    |||| ||||||||||||||||||||||| || || |  | ||| |||||||  |||||| |||||||||||||  | ||||  ||||||||||||||    
T  37827351 tggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 48898405 - 48898342
Alignment:
Q  222 tgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggta 285  Q
    ||||||||||| || |||||  |||||||||| |||||||||||  ||||||||||||| ||||    
T  48898405 tgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 48902627 - 48902572
Alignment:
Q  228 ataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||||||||||  |||||||||| || ||||||||||| |||||||| |||||    
T  48902627 ataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccgg 48902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 7771298 - 7771261
Alignment:
Q  8 caaaagtataaaccctctacacgaacctttaatatcaa 45  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7771298 caaaagtataaaccctctacacgaacctctaatttcaa 7771261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 283
Target Start/End: Complemental strand, 7786158 - 7786065
Alignment:
Q  190 taagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||| |||||||||||||| || | ||  | |||||||| ||||| ||||| |||||||||||| |||||    |||||||| ||||||||    
T  7786158 taagttggaaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccgg 7786065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 7904927 - 7904890
Alignment:
Q  8 caaaagtataaaccctctacacgaacctttaatatcaa 45  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7904927 caaaagtataaaccctctacacgaacctctaatttcaa 7904890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 7774010 - 7774042
Alignment:
Q  8 caaaagtataaaccctctacacgaacctttaat 40  Q
    |||||||||||||||||||||||||||| ||||    
T  7774010 caaaagtataaaccctctacacgaacctctaat 7774042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 7789983 - 7789951
Alignment:
Q  8 caaaagtataaaccctctacacgaacctttaat 40  Q
    |||||||||||||||||||||||||||| ||||    
T  7789983 caaaagtataaaccctctacacgaacctctaat 7789951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 11979 - 11880
Alignment:
Q  188 agtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 287  Q
    |||||||||||||||||||||||| || | |   | ||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| | |||||||    
T  11979 agtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaac 11880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 287
Target Start/End: Complemental strand, 21015496 - 21015394
Alignment:
Q  185 ggcagtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggt 284  Q
    |||||||| || |||||||||| |||| || |  | ||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||| | ||||||    
T  21015496 ggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggt 21015397  T
Q  285 aac 287  Q
    |||    
T  21015396 aac 21015394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 11024934 - 11024997
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 287  Q
    |||||||||||  |||||| ||||||||||||| |||||||| || ||||||||||||||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11024997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 11006359 - 11006418
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    |||||||||||  |||||| |||||||||| ||||||||||| ||||| |||||||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccgg 11006418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 11015922 - 11015985
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 287  Q
    |||||||||||  ||| || ||||||||||||| |||||||| || ||||||||||||||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaac 11015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 47452304 - 47452363
Alignment:
Q  224 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 283  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  47452304 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 47452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 47452085 - 47452129
Alignment:
Q  2 acaactcaaaagtataaaccctctacacgaacctttaatatcaag 46  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||    
T  47452085 acaacttaaaagtataaaccctctacatgaacctttaatttcaag 47452129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University