View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_34 (Length: 396)
Name: NF16757_low_34
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 34 - 385
Target Start/End: Complemental strand, 31078662 - 31078312
Alignment:
| Q |
34 |
catcattcaaaacaaaagtcgcatttatttaaatatgaggaattatctccagaaattaagactagctgatcattccaattaaaattaattcttctattta |
133 |
Q |
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| T |
31078662 |
catcattcaaaacaaaagtcgcatttaattaaatatgaggaattatctccagaaattaagactagctgatcatttcaattaaaattaattcttctattta |
31078563 |
T |
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| Q |
134 |
ctccaataccctatcaaattaagaatctggatcatgcattttagtgtaaacagctaaaagacatgttannnnnnncccttctaatctaaacaaatattgt |
233 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |
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| T |
31078562 |
ctccaataccctatcaaattaagaatttggatcatgcattttagtgtaaacagctaaaaaacatgtt-ttttttccccttctaatctaaacaaagattgt |
31078464 |
T |
|
| Q |
234 |
tcaaattttcacaagtcgtgtgtttatgtggcttgttaggtgatgtatgatggagtcacataacacccttttacttcaaacctcatattttcaactatgg |
333 |
Q |
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||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31078463 |
tcaaatttttacaagtcgtgtatttacgtggcttgttaggtgatgtatgatggagtcacataacacccttttacttcaaacctcatattttcaattatgg |
31078364 |
T |
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| Q |
334 |
tcaaaacaatttaattggattatcacattttcgccattcataatactttcat |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078363 |
tcaaaacaatttaattggattatcacattttcgccattcataatactttcat |
31078312 |
T |
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