View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16757_low_35 (Length: 393)
Name: NF16757_low_35
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_35 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 6 - 393
Target Start/End: Complemental strand, 38887311 - 38886924
Alignment:
| Q |
6 |
atgaaagaagtactatagtattcaacaaatccactggttttatgattaaccacctcatgcacaccttgaccaccatttagttttttatcagaaaatgatg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38887311 |
atgaaagaagtactatagtattcaacaaatccactggttttatgattaaccacctcatgcacaccttgatcaccatttagttttttatcagaaaatgatg |
38887212 |
T |
|
| Q |
106 |
ccgagtctttcatcaatgaaccaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttcc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887211 |
ccgagtctttcatcaatgaaccaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttcc |
38887112 |
T |
|
| Q |
206 |
aagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaagaattttcttatacccttttaacttg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887111 |
aagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaagaattttcttatacccttttaacttg |
38887012 |
T |
|
| Q |
306 |
ccactcacgaaaactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttttc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38887011 |
ccactcacgaaaactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttttc |
38886924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 4235894 - 4235779
Alignment:
| Q |
134 |
ttgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcataacccaattt |
233 |
Q |
| |
|
||||||||||||||| |||||||| | || ||| | || ||||| || ||| | || |||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
4235894 |
ttgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaatta |
4235795 |
T |
|
| Q |
234 |
gttttctctggctttc |
249 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
4235794 |
gtcttctctggttttc |
4235779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 4235701 - 4235637
Alignment:
| Q |
327 |
gttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttt |
391 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||| || |||| ||||| || ||||||||||| |
|
|
| T |
4235701 |
gttttccctgttttgtgccatcttgtttcaattccttcttcatcagtgtgaacctttcttctttt |
4235637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 125 - 346
Target Start/End: Complemental strand, 30506034 - 30505813
Alignment:
| Q |
125 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
224 |
Q |
| |
|
||||||||| ||||| || || ||||| |||||||||||||| || || || | ||||||||||| ||||||| | |||||||| || || ||||| |
|
|
| T |
30506034 |
accaccacactgtcttggttgagtttgatagaaaactttggacacaactaacactccttctttctcttcttcatcactcccaagatgatactgatgcatc |
30505935 |
T |
|
| Q |
225 |
acccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaagaattttcttatacccttttaacttgccactcacgaaaactggcc |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||| || || |||||||||||| | | | | ||||| | |
|
|
| T |
30505934 |
acccaatttgttttctctggctttctttgttttccatagtttgtgtaaagtacaagaatttttttgtaaccttttaacttggaattgttgtagactggtc |
30505835 |
T |
|
| Q |
325 |
ttgttttacctgttttgtgcca |
346 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
30505834 |
tagttttacctgttttgtgcca |
30505813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 34829834 - 34829956
Alignment:
| Q |
125 |
accaccacattgtctaggctgtgtttggtagaaaactttggaaactaccaattccccttctttctcctcttcattgtttccaagatggtattggtgcata |
224 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| || || || ||||| || ||||| || |||||||| |||||||| | ||||| |||||||| ||||| |
|
|
| T |
34829834 |
accaccacattgtcgaggttgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatc |
34829933 |
T |
|
| Q |
225 |
acccaatttgttttctctggctt |
247 |
Q |
| |
|
|||||||| || ||||| ||||| |
|
|
| T |
34829934 |
acccaattggtcttctcaggctt |
34829956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 34830026 - 34830100
Alignment:
| Q |
317 |
aactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttt |
391 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |||||||| || |||| || || || ||||||||||| |
|
|
| T |
34830026 |
aactggtctagttttccctgttttgtgccatcttgtttcacttccttcttcatcagtttgaacctttcttctttt |
34830100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 43015252 - 43015143
Alignment:
| Q |
180 |
ccttctttctcctcttcattgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaa |
279 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| || ||||| || |||| | ||||| | |||| ||||| || |||| |
|
|
| T |
43015252 |
ccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccgaagttggtgtagagaacaa |
43015153 |
T |
|
| Q |
280 |
gaattttctt |
289 |
Q |
| |
|
|||||||||| |
|
|
| T |
43015152 |
gaattttctt |
43015143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 28948881 - 28948955
Alignment:
| Q |
317 |
aactggccttgttttacctgttttgtgccatcttgtctcacttccatcagcatctgtgtgcacttttcttctttt |
391 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| |||||||| || |||| || || || ||||||||||| |
|
|
| T |
28948881 |
aactggtctagttttccctgttttgtgccatcttgtttcacttccttcttcatcagtttgaacctttcttctttt |
28948955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University