View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_38 (Length: 374)

Name: NF16757_low_38
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_38
NF16757_low_38
[»] chr7 (25 HSPs)
chr7 (1-318)||(2580673-2580970)
chr7 (1-318)||(9189501-9189819)
chr7 (1-318)||(9184667-9184987)
chr7 (1-314)||(23402513-23402826)
chr7 (1-314)||(20284373-20284684)
chr7 (1-77)||(33332187-33332263)
chr7 (70-281)||(38671552-38671761)
chr7 (140-281)||(25615485-25615626)
chr7 (1-67)||(2647444-2647510)
chr7 (1-86)||(3047538-3047624)
chr7 (71-281)||(41649340-41649550)
chr7 (1-45)||(46516074-46516118)
chr7 (144-281)||(3258416-3258552)
chr7 (1-84)||(49091973-49092056)
chr7 (1-86)||(30024983-30025068)
chr7 (7-67)||(79678-79738)
chr7 (1-79)||(1113495-1113574)
chr7 (5-84)||(4796399-4796478)
chr7 (5-84)||(21989196-21989275)
chr7 (1-67)||(2479620-2479686)
chr7 (3-37)||(21983541-21983575)
chr7 (1-43)||(44847896-44847938)
chr7 (1-43)||(47263950-47263992)
chr7 (1-45)||(18413926-18413970)
chr7 (1-45)||(21640096-21640140)
[»] chr6 (15 HSPs)
chr6 (1-318)||(31936859-31937177)
chr6 (1-73)||(31979796-31979868)
chr6 (1-67)||(10076938-10077004)
chr6 (1-84)||(18234367-18234450)
chr6 (1-84)||(21272719-21272802)
chr6 (140-226)||(5043104-5043190)
chr6 (1-43)||(5757249-5757291)
chr6 (1-46)||(5572011-5572056)
chr6 (1-72)||(22963983-22964054)
chr6 (1-72)||(23824339-23824410)
chr6 (1-84)||(24435702-24435785)
chr6 (1-86)||(9183282-9183367)
chr6 (1-43)||(23896636-23896678)
chr6 (1-43)||(31086245-31086287)
chr6 (144-180)||(2973551-2973587)
[»] chr1 (28 HSPs)
chr1 (1-318)||(32889722-32890039)
chr1 (1-314)||(47098326-47098638)
chr1 (1-314)||(47102339-47102652)
chr1 (1-314)||(27103902-27104215)
chr1 (1-281)||(9476546-9476826)
chr1 (58-251)||(197218-197409)
chr1 (72-283)||(40122529-40122738)
chr1 (70-281)||(8551117-8551327)
chr1 (1-84)||(29652097-29652180)
chr1 (1-87)||(44454990-44455077)
chr1 (140-281)||(37167721-37167857)
chr1 (1-84)||(21536300-21536383)
chr1 (1-84)||(37070051-37070134)
chr1 (70-114)||(834497-834541)
chr1 (1-45)||(24202534-24202578)
chr1 (1-72)||(49918194-49918266)
chr1 (164-281)||(3847450-3847567)
chr1 (1-67)||(13598684-13598750)
chr1 (1-43)||(13604393-13604435)
chr1 (196-281)||(47114594-47114678)
chr1 (140-251)||(834550-834661)
chr1 (121-178)||(34602907-34602964)
chr1 (121-178)||(34603119-34603176)
chr1 (144-180)||(7482842-7482878)
chr1 (1-72)||(10925068-10925140)
chr1 (1-45)||(19358609-19358653)
chr1 (1-45)||(19366073-19366117)
chr1 (1-72)||(37503805-37503877)
[»] chr8 (13 HSPs)
chr8 (1-318)||(19751890-19752207)
chr8 (70-226)||(6598656-6598810)
chr8 (70-226)||(6674109-6674263)
chr8 (1-84)||(5702210-5702293)
chr8 (1-84)||(4456312-4456395)
chr8 (1-84)||(7412624-7412707)
chr8 (70-182)||(41365179-41365289)
chr8 (1-72)||(43036268-43036340)
chr8 (1-67)||(4696355-4696421)
chr8 (1-43)||(23799347-23799389)
chr8 (1-37)||(19175531-19175567)
chr8 (1-45)||(1261719-1261763)
chr8 (1-72)||(42498039-42498111)
[»] chr5 (19 HSPs)
chr5 (1-318)||(31300092-31300408)
chr5 (1-314)||(24553027-24553340)
chr5 (1-314)||(17003459-17003772)
chr5 (58-240)||(28832584-28832765)
chr5 (1-176)||(42127008-42127183)
chr5 (70-281)||(31182600-31182811)
chr5 (120-283)||(16451716-16451879)
chr5 (1-72)||(11181574-11181645)
chr5 (1-84)||(11916702-11916785)
chr5 (1-84)||(14520514-14520597)
chr5 (1-86)||(16649873-16649959)
chr5 (1-47)||(28832541-28832587)
chr5 (1-43)||(36932119-36932161)
chr5 (2-43)||(9353103-9353144)
chr5 (70-114)||(8566277-8566321)
chr5 (1-37)||(12083954-12083990)
chr5 (1-83)||(15464818-15464900)
chr5 (1-84)||(533603-533686)
chr5 (1-45)||(38219686-38219730)
[»] chr3 (34 HSPs)
chr3 (1-314)||(3323180-3323493)
chr3 (1-314)||(3327848-3328159)
chr3 (6-314)||(37466584-37466891)
chr3 (1-318)||(6794222-6794517)
chr3 (1-84)||(25929115-25929198)
chr3 (1-84)||(40592501-40592584)
chr3 (7-84)||(8126920-8126997)
chr3 (140-281)||(760475-760616)
chr3 (1-84)||(1736023-1736106)
chr3 (1-84)||(39032274-39032357)
chr3 (1-67)||(8370225-8370291)
chr3 (1-67)||(27974688-27974754)
chr3 (121-281)||(46859892-46860051)
chr3 (140-279)||(9580913-9581052)
chr3 (1-84)||(21711506-21711588)
chr3 (1-84)||(24694885-24694968)
chr3 (1-52)||(26299272-26299323)
chr3 (1-84)||(30709516-30709599)
chr3 (5-84)||(47923623-47923702)
chr3 (1-67)||(27026990-27027056)
chr3 (1-83)||(33386395-33386477)
chr3 (1-37)||(16264633-16264669)
chr3 (144-235)||(39153761-39153853)
chr3 (1-37)||(48438499-48438535)
chr3 (1-52)||(1417242-1417293)
chr3 (1-43)||(27453242-27453284)
chr3 (1-43)||(27986216-27986258)
chr3 (1-43)||(37725959-37726001)
chr3 (1-67)||(40844939-40845005)
chr3 (196-281)||(41820186-41820270)
chr3 (70-114)||(29682153-29682197)
chr3 (1-72)||(29812908-29812980)
chr3 (1-37)||(36029377-36029413)
chr3 (1-72)||(51398659-51398731)
[»] chr2 (22 HSPs)
chr2 (1-314)||(10444968-10445280)
chr2 (70-194)||(34140101-34140223)
chr2 (1-84)||(33118419-33118502)
chr2 (70-283)||(11151922-11152133)
chr2 (70-235)||(42362026-42362190)
chr2 (1-64)||(14698759-14698822)
chr2 (1-83)||(8389880-8389962)
chr2 (1-84)||(33528354-33528437)
chr2 (1-87)||(40015208-40015295)
chr2 (70-180)||(724074-724182)
chr2 (1-64)||(28258927-28258990)
chr2 (1-37)||(34389135-34389171)
chr2 (1-72)||(39284730-39284802)
chr2 (70-181)||(14634156-14634264)
chr2 (1-84)||(23078201-23078284)
chr2 (2-84)||(10706982-10707064)
chr2 (1-43)||(20522506-20522548)
chr2 (1-67)||(36757509-36757575)
chr2 (70-99)||(11690308-11690337)
chr2 (1-34)||(17865489-17865522)
chr2 (1-37)||(21630229-21630265)
chr2 (1-72)||(36318260-36318332)
[»] chr4 (27 HSPs)
chr4 (1-84)||(25861763-25861846)
chr4 (5-114)||(42599281-42599384)
chr4 (144-226)||(46702976-46703058)
chr4 (196-314)||(42599114-42599232)
chr4 (1-84)||(5268930-5269013)
chr4 (1-84)||(16623023-16623106)
chr4 (1-67)||(10047665-10047731)
chr4 (1-86)||(54867463-54867548)
chr4 (9-84)||(6743145-6743220)
chr4 (1-84)||(16628602-16628685)
chr4 (1-43)||(3777833-3777875)
chr4 (2-84)||(8689226-8689308)
chr4 (1-83)||(31985365-31985446)
chr4 (2-84)||(36314960-36315042)
chr4 (2-84)||(36329169-36329251)
chr4 (214-281)||(12072813-12072880)
chr4 (1-84)||(39774034-39774118)
chr4 (144-180)||(41963937-41963973)
chr4 (8-79)||(18377644-18377715)
chr4 (1-43)||(5396442-5396484)
chr4 (70-108)||(47038739-47038777)
chr4 (70-111)||(5871617-5871658)
chr4 (1-37)||(5143544-5143580)
chr4 (1-72)||(12739801-12739873)
chr4 (1-72)||(12748007-12748079)
chr4 (1-72)||(29254339-29254411)
chr4 (1-72)||(56178887-56178959)
[»] scaffold0087 (2 HSPs)
scaffold0087 (1-67)||(36579-36645)
scaffold0087 (1-84)||(43691-43774)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-43)||(45483-45525)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-37)||(85967-86003)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-43)||(8188-8230)
[»] scaffold0006 (2 HSPs)
scaffold0006 (1-67)||(5969-6035)
scaffold0006 (1-43)||(133050-133092)
[»] scaffold0188 (2 HSPs)
scaffold0188 (1-45)||(17717-17761)
scaffold0188 (1-45)||(23810-23854)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 2580673 - 2580970
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  2580673 caaccctaaagttacctcctttgcaatccaagtttctctctctaaaacctctacttcaaaatctgcaaagaaacacttaaatagtacacagtgacagacg 2580772  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatcg 200  Q
    |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||                    ||||    
T  2580773 aaatcgcgccgcgcttgctaaaaatcgtgccacgattttaaccgtacgacacaaggtacaacgaccttatccacaa--------------------atcg 2580852  T
Q  201 cgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatcttaa 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||    
T  2580853 cgccgcgatttgccttcagcaaaaacatccattctgccaagcagaatcgcgccacggctcccaaaatcgcgccacgattttggtctttacagaatcttaa 2580952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 9189819 - 9189501
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaa-tctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||   |||||| |||||||||||||||||| |||||||||| ||||||||    
T  9189819 caaccctaaagttatctcctttgcaatccaagtttctctctctaaaacctctctctcaaaaatctgcaaagaaacacttatatagtacacagtgacagac 9189720  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatc 199  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |  | ||||||||| ||||    
T  9189719 gaaatcgcgccgcgcctgctaaaaatcgtgccacgatttaaagcgtacgacccaaggtacaacgtccttatccaaaaatcacgccacgccagtacaaatc 9189620  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||| |  ||| ||||| |||||||||||| ||||||||| ||||||||||||  |    
T  9189619 gcgccgcgatttgccttcagcaaaaacatccattatgccaagcagaattgtatcacggctcccaaaatcgcgccccgattttggcctttacagaatcaga 9189520  T
Q  300 aatttgaagtcaattacaa 318  Q
    |||||||||||||||||||    
T  9189519 aatttgaagtcaattacaa 9189501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 9184987 - 9184667
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaa-ttcaaaatctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    |||||||||||||||||||||||||||| | |||||| ||||||||||||||   || |||||||||||||||||| ||| ||| |||||| |||||||     
T  9184987 caaccctaaagttacctcctttgcaatcaatgtttctctctctaaaacctctctcttaaaaatctgcaaagaaacagttatataatacacagtgacagat 9184888  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgac--cttatccacaaatcgcatcgcgccagtaccaa 197  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |  ||||||||||||||||  | ||||||||| ||    
T  9184887 gaaatcgcgccgcgcctgctaaaaatcgtgccacgatttaaagcgtacgacccaaggttcaacgtctccttatccacaaatcgcgccacgccagtacaaa 9184788  T
Q  198 tcgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatct 297  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | | ||||| ||||||||||||||||||||||  |||||||||||     
T  9184787 tcgcgccacgatttgccttcagcaaaaacatccattctaccaaacaaaatcgcatgacggctcccaaaatcgcgccacgattttggcttttacagaatca 9184688  T
Q  298 taaatttgaagtcaattacaa 318  Q
     ||||||||||||||||||||    
T  9184687 aaaatttgaagtcaattacaa 9184667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 23402826 - 23402513
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct-aaaacctctaattcaaaa-tctgcaaagaaacacttaaatagtacacaatgacaga 98  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||  ||||||| | |||||||||||||||| |||||||||| |||||||    
T  23402826 caaccctaaagttacctcctttgtaatccaagtttctctctctcaaaacctctccttcaaaaatttgcaaagaaacacttatatagtacacagtgacaga 23402727  T
Q  99 cgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa- 197  Q
    |||||| ||||||||| || | | ||||| |||||||| |||| |||||||| ||||||||||| ||||||||||||||| ||  | ||||||||| ||     
T  23402726 cgaaatcgcgccgcgcctg-tcagaatcgcgccacgatataaa-cgtacgacccaaggtacaacaaccttatccacaaattgcgccacgccagtactaaa 23402629  T
Q  198 tcgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatct 297  Q
    | | |||||||||||||||||||||||| ||||||||| |||||  ||||||||||| | ||  |||||||||||||||||||||| ||||| ||||||     
T  23402628 ttgtgccgcgatttgccttcagcaaaaa-atccattctgccaagagaaatcgcgtcacgacttccaaaatcgcgccacgattttggcctttatagaatca 23402530  T
Q  298 taaatttgaagtcaatt 314  Q
     ||||||||||||||||    
T  23402529 gaaatttgaagtcaatt 23402513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 20284373 - 20284684
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||||||||||||||||||||  ||||||||||||| ||||| ||| ||||  |||||||| |||||||||||||||| |||||||||| || ||||||    
T  20284373 caaccctaaagttacctcctttataatccaagtttctctctctcaaaactctccttcaaaatttgcaaagaaacacttatatagtacacagtgtcagacg 20284472  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-tc 199  Q
    |||| ||||||| | ||| | || ||| |||||| | |||| |||||||| |||| || ||||  ||||||||||||||||  | ||||||||| || ||    
T  20284473 aaatcgcgccgcacctgccagaa-tcgcgccacggtataaa-cgtacgacccaag-tataacggtcttatccacaaatcgcgccacgccagtactaaatc 20284569  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    | |||||||||||||||||||||||||||||||||| |||||  |||||| |||| ||||| |||||| ||||||||||||||| ||||||||||||  |    
T  20284570 gtgccgcgatttgccttcagcaaaaacatccattctgccaagagaaatcgtgtcacggctcccaaaatggcgccacgattttggcctttacagaatcaga 20284669  T
Q  300 aatttgaagtcaatt 314  Q
    ||||| |||||||||    
T  20284670 aatttaaagtcaatt 20284684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 33332263 - 33332187
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacact 77  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||  |||||||||||||||||||||||    
T  33332263 caaccctaaagttacctcctttgtaatccaagtttctatctctcaaagctctccttcaaaatctgcaaagaaacact 33332187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 281
Target Start/End: Original strand, 38671552 - 38671761
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||||||| | |||||||| |||| |||||||||| | | |||||||  |||||  || ||||||||||| ||||| || || ||||||    
T  38671552 gaaacacttaaatagtacaaagtgacagacaaaatcgcgccgcgctag-tgaaaatcgcaccacg-gttgaagcgtacgacccaaggcacgacaacctta 38671649  T
Q  170 tccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagcaaaaa-catccattctaccaagcaaaatcgcgtcatggctctcaaaat 267  Q
    ||||||||| || || |||| | ||  ||||||||| ||||||| ||| || ||||| |||||||||| || |||||||||||| || | || | |||||    
T  38671650 tccacaaattgcgtcacgcctgcacaaaatcgcgccacgatttg-ctttagtaaaaaccatccattctgcc-agcaaaatcgcgccacgcctttgaaaat 38671747  T
Q  268 cgcgccacgatttt 281  Q
    ||||||||||||||    
T  38671748 cgcgccacgatttt 38671761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 25615626 - 25615485
Alignment:
Q  140 aagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagca-aaaacatccattctac 237  Q
    ||||||||||| |||||||| || |||||||| |||||||| ||| || | | ||  ||||||||| ||||||| |||||||| ||| |||||||||| |    
T  25615626 aagcgtacgacccaaggtacgacaaccttatcgacaaatcgtatcacggctgcacaaaatcgcgccacgatttg-cttcagcagaaaccatccattctgc 25615528  T
Q  238 caagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    | |||||||||||| || | |||| ||||||||||||| |||||    
T  25615527 c-agcaaaatcgcgccacgcctctgaaaatcgcgccacaatttt 25615485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2647510 - 2647444
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    |||||||||||||| |||||||| | ||||||||||| ||||||||| ||||  |||||||||||||    
T  2647510 caaccctaaagttatctcctttgtagtccaagtttctctctctaaaatctctccttcaaaatctgca 2647444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 3047538 - 3047624
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagta 86  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||| ||| ||||  ||||||||||| |  |||||||||| ||||||    
T  3047538 caaccctaaagttacctcctttgtaatcccaagtttctctctcttaaagctcttcttcaaaatctgaactgaaacacttatatagta 3047624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 281
Target Start/End: Original strand, 41649340 - 41649550
Alignment:
Q  71 aaacacttaaatagtacacaatgacagacgaaatt-gcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    |||||||||||||||||||| |||||||| ||| | | | |||||  | | ||||||| |||||| || || ||||||||| |||||||| || ||||||    
T  41649340 aaacacttaaatagtacacagtgacagacaaaaatcgtgtcgcgccag-tgaaaatcgcgccacggttgaa-gcgtacgacccaaggtacgacaacctta 41649437  T
Q  170 tccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagca-aaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaat 267  Q
    |||||||||||| || |||| | ||  ||| ||||| ||||||| ||| |||| ||| |||||||||| |||   ||||| ||| || | |||| |||||    
T  41649438 tccacaaatcgcgtcacgcctgcacaaaattgcgccacgatttg-cttaagcagaaaccatccattctgccagcaaaaattgcgccacgcctctgaaaat 41649536  T
Q  268 cgcgccacgatttt 281  Q
    ||||||||||||||    
T  41649537 cgcgccacgatttt 41649550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46516118 - 46516074
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||    
T  46516118 caaccctaaagttacctcctttgtaatccaagtttctctctctaa 46516074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 281
Target Start/End: Complemental strand, 3258552 - 3258416
Alignment:
Q  144 gtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagca-aaaacatccattctaccaag 241  Q
    ||||||| |||||||||||||||||||||||||||||| || ||   | ||  ||||||||| ||||||| |||||||| ||| |||||||||| || ||    
T  3258552 gtacgacccaaggtacaacgaccttatccacaaatcgcgtcacg-gtgcacaaaatcgcgccacgatttg-cttcagcagaaaccatccattctgcc-ag 3258456  T
Q  242 caaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    |||||||||| ||   |||| |||||| ||||||||||||    
T  3258455 caaaatcgcgccacacctctgaaaatcacgccacgatttt 3258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 49091973 - 49092056
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  49091973 caaccttaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 49092056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30024983 - 30025068
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagta 86  Q
    |||||||||||||||||||||||   ||| |||||||| |||||  || |||| ||||||||||||||||| |||||||| ||||||    
T  30024983 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctcattcaaaatctgcaaag-aacacttatatagta 30025068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 79678 - 79738
Alignment:
Q  7 taaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||| ||||||||||||| |||||  || ||||  |||||||||||||    
T  79678 taaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgca 79738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 1113574 - 1113495
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaaacactta 79  Q
    ||||||||||||||| |||||||   ||| |||||||| |||||  |||||||  ||||||||||||| |||||||||||    
T  1113574 caaccctaaagttacttcctttgatttcccaagtttctctctcttcaacctcttcttcaaaatctgcacagaaacactta 1113495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 4796478 - 4796399
Alignment:
Q  5 cctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||| ||||||||||||| || ||  || ||||  |||||||||| || || |||||||| ||||    
T  4796478 cctaaagttacctcctttgtaatccaagtttctctcactccaagctcttcttcaaaatctacacaggaacacttatatag 4796399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 21989196 - 21989275
Alignment:
Q  5 cctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||| ||||||||||||| || ||  || ||||  ||||||||||||| |  |||||||| ||||    
T  21989196 cctaaagttacctcctttgtaatccaagtttctctcacttcaagctctccttcaaaatctgcacaagaacacttatatag 21989275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2479620 - 2479686
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||  || ||||  | |||||||||||    
T  2479620 caaccctaaagttccctcctttgtaatccaagtttctctctcttcaagctcttctccaaaatctgca 2479686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 21983541 - 21983575
Alignment:
Q  3 accctaaagttacctcctttgcaatccaagtttct 37  Q
    ||||||||||||||||||||| |||||||||||||    
T  21983541 accctaaagttacctcctttgtaatccaagtttct 21983575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44847938 - 44847896
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||||||||||||  ||||||||||||| |||||    
T  44847938 caaccctaaagttacctcctttataatccaagtttctctctct 44847896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47263950 - 47263992
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||||||||||||  ||||||||||||| |||||    
T  47263950 caaccctaaagttacctcctttataatccaagtttctctctct 47263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18413926 - 18413970
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  18413926 caaccctagagttccctcctttgtaatccaagtttctctctctaa 18413970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21640096 - 21640140
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  21640096 caaccctagagttccctcctttgtaatccaagtttctctctctaa 21640140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 31936859 - 31937177
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||    
T  31936859 caaccctaaagttacctcctttgcaatccaagtttctctctctaaaacctctacttcaaaatctgcaaagaaacacttatatagtacacagtgacagtcg 31936958  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatc 199  Q
    |||| ||||||||| || |||||||||||||||||||| || ||||||||  ||| ||||||| |||||||||||||||||  | |||||||||  ||||    
T  31936959 aaatcgcgccgcgcctgttaaaaatcgtgccacgattttaaacgtacgacctaagatacaacgtccttatccacaaatcgcgccacgccagtactaaatc 31937058  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||       
T  31937059 gcgccgcgatttgccttcagcaaaaacattcattctgccaagcaaaatcgcgtcacggctcccaaaatcgcgccacgattttggcctttacagaatcagt 31937158  T
Q  300 aatttgaagtcaattacaa 318  Q
    |||||||||||||||||||    
T  31937159 aatttgaagtcaattacaa 31937177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31979796 - 31979868
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaa 73  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| ||||   |||||||||| |||||||    
T  31979796 caaccctaaagttacctcctttgcagtccaagtttctctctctaaaagctctctctcaaaatctggaaagaaa 31979868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10077004 - 10076938
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||  |||||||||||||    
T  10077004 caaccctaaagttacctcctttgtaatccaagtttctctctcttaaagctctccttcaaaatctgca 10076938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 18234367 - 18234450
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||| ||||||||||| |||||||||||||||||||  || ||||  ||||||| ||||| |  |||||||| ||||    
T  18234367 caaccctaaagctacctcctttgtaatccaagtttctttctcttcaagctctccttcaaaaactgcacaagaacacttatatag 18234450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21272802 - 21272719
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||||| |||||| |||| |||||||| || ||  ||  |||| ||||||| ||||||||||||||||| ||||    
T  21272802 caaccctaaagttaccccctttgtaatcaaagtttctctcacttcaagttctacttcaaaaactgcaaagaaacacttatatag 21272719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 5043190 - 5043104
Alignment:
Q  140 aagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagcaaaaac 226  Q
    ||||||||||  |||||||| |  |||||||||||||||||| || |||| | || |||||| || |||||||||||||||| ||||    
T  5043190 aagcgtacgatccaaggtacgataaccttatccacaaatcgcgtcacgcctgcacaaatcgcaccacgatttgccttcagcagaaac 5043104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5757291 - 5757249
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  5757291 caaccctaaagttacctcctttgtaatccaagtttctctctct 5757249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5572056 - 5572011
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaa 46  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  5572056 caaccctaaagttacctccattgtaatccaagtttctctctctaaa 5572011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 22963983 - 22964054
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||| ||| |||| |||| |||||||| ||| |  || ||||| ||||||||||||||||||    
T  22963983 caaccctaaagttagctcttttgtaatcaaagtttctctcttttcaagctctagttcaaaatctgcaaagaa 22964054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23824410 - 23824339
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||| ||| |||| |||| |||||||| ||| |  || ||||| ||||||||||||||||||    
T  23824410 caaccctaaagttagctcttttgtaatcaaagtttctctcttttcaagctctagttcaaaatctgcaaagaa 23824339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24435785 - 24435702
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||| |||||||| ||||| ||||||| |||||  || || |  |||||||| |||||| ||||||||| ||||    
T  24435785 caaccctaaagttatctcctttgtaatcctagtttctctctcttcaagctattcttcaaaatttgcaaacaaacacttatatag 24435702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 9183282 - 9183367
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagta 86  Q
    |||||||||||||||||||||||   | |||||||||| |||||  || ||||  ||||||||||||||||||| ||||| ||||||    
T  9183282 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaatctgcaaagaaa-acttatatagta 9183367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23896636 - 23896678
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    |||| |||||||||||||||||| ||||||||||||| |||||    
T  23896636 caactctaaagttacctcctttgtaatccaagtttctctctct 23896678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31086287 - 31086245
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    |||||||||||||||| |||||| ||||||||||||| |||||    
T  31086287 caaccctaaagttaccccctttgtaatccaagtttctctctct 31086245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 2973551 - 2973587
Alignment:
Q  144 gtacgacacaaggtacaacgaccttatccacaaatcg 180  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  2973551 gtacgacccaaggtacaacgaccttatccagaaatcg 2973587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 32889722 - 32890039
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| |||||||||| |||||||||    
T  32889722 caaccctaaagttacctcctttgcaatccaagtttctctctctaaaatctctacttcaaaatatgcaaagaaacacttatatagtacacagtgacagacg 32889821  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatcg 200  Q
    ||||  |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||   | || |||||| ||  |    
T  32889822 aaatcacgccgcgcctgctaaaaatcgtgccacgattttaagcgtacgacccaaggtacaacgaccttatccacaaatcgtgccacgtcagtacaaaatg 32889921  T
Q  201 cgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatcttaa 300  Q
    ||||||||||||||||||||||||||||||||| | ||||||| ||||| |||| ||||| |||||||| ||||||||||||||||||||| |||| |||    
T  32889922 cgccgcgatttgccttcagcaaaaacatccattttgccaagcagaatcgtgtcacggctcccaaaatcgtgccacgattttggtctttacataatcataa 32890021  T
Q  301 atttgaagtcaattacaa 318  Q
    ||||||||||||||||||    
T  32890022 atttgaagtcaattacaa 32890039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 47098638 - 47098326
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  47098638 caaccctaaagttacctcctttgtaatccaagtttctctctctaaaagctctcattcaaaatctgcaaagaaacacttatatagtacacagtgacagacg 47098539  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatc 199  Q
    |||| ||||||||| || | | ||||| |||||||||| || |||||||| |||||||||||||||||||||| |||| ||  | |||||||||  ||||    
T  47098538 aaatcgcgccgcgcctg-tcagaatcgcgccacgattttaaacgtacgacccaaggtacaacgaccttatccataaattgcgccacgccagtactgaatc 47098440  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    |||||||||||| |||||||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||||| ||||| ||||||| ||||  |    
T  47098439 gcgccgcgatttaccttcagcaaaaacatccattctaccaagagaaatcgcgtcacggctcccaaaatcgcgccacga-tttggcctttacaaaatcaga 47098341  T
Q  300 aatttgaagtcaatt 314  Q
    ||||| |||||||||    
T  47098340 aatttcaagtcaatt 47098326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 47102652 - 47102339
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||| |||||||||    
T  47102652 caaccctaaagttacctcctttgtaatccaagtttctctctctaaaagctctcattcaaaatctgcaaagaaacacttatatagtacacactgacagacg 47102553  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatc 199  Q
    |||| | | ||||| || | | |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||  | |||||||||  ||||    
T  47102552 aaatcgggtcgcgcctg-tcagaatcgtgccacgattttaaacgtacgacccaaggtacaacgaccttatccacaaatcgcgccacgccagtactaaatc 47102454  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    ||  |||||||| ||||||||||||||||||||| | |||||  ||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||  |    
T  47102453 gcatcgcgatttaccttcagcaaaaacatccattatgccaagagaaatcgcgtcacggctcccaaaatcgtgccacgattttggcctttacagaatcaga 47102354  T
Q  300 aatttgaagtcaatt 314  Q
    |||||||||||||||    
T  47102353 aatttgaagtcaatt 47102339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 27104215 - 27103902
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaa-tctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||   |||||| ||||||||||||||||||||||||||||| ||||||||    
T  27104215 caaccttaaagttacctcctttgtaatccaagtttctctctctaaaagctctctctcaaaaatctgcaaagaaacacttaaatagtacacagtgacagac 27104116  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-t 198  Q
     |||| ||||||||| || | | |||||||||||||||| || |||||||| ||||||||||||  ||||||||||||||||  ||||||||||| || |    
T  27104115 -aaatcgcgccgcgcctg-tcagaatcgtgccacgattttaaacgtacgacgcaaggtacaacgttcttatccacaaatcgcgccgcgccagtactaaat 27104018  T
Q  199 cgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctt 298  Q
    ||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||| || || |||||||||||||||||||| | |||| |||||||      
T  27104017 cgcgccgcgctttgccttcagcaaaaacatcaattctaccaagataaatcgcgtcacgggtcccaaaatcgcgccacgatttttgcctttgcagaatcag 27103918  T
Q  299 aaatttgaagtcaatt 314  Q
    |||||| |||||||||    
T  27103917 aaatttaaagtcaatt 27103902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 9476546 - 9476826
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaac-ctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    |||||| |||||||||||||||| ||||||||||||| |||||||| | |||| |   |||||||||||||||||||||| |||||||||| |||||| |    
T  9476546 caacccaaaagttacctcctttgtaatccaagtttctctctctaaagctctctcaca-aaaatctgcaaagaaacacttatatagtacacagtgacaggc 9476644  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-t 198  Q
    ||||| ||||||||  || | | |||||||||||||||  || |||||||| ||||||||||||||||||||||| ||||||  | ||| ||||| || |    
T  9476645 gaaatcgcgccgcgtctg-tcagaatcgtgccacgattctaaacgtacgacccaaggtacaacgaccttatccacgaatcgcgccacgctagtactaaat 9476743  T
Q  199 cgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    ||||||| |||||||||||| ||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||    
T  9476744 cgcgccgtgatttgccttcaacaaaaacatccattctaccaagagaaatcgcgtcacggctcccaaaatcgcgccacgatttt 9476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 58 - 251
Target Start/End: Original strand, 197218 - 197409
Alignment:
Q  58 aaaatctgcaaagaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggt 157  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||  || |   ||||||||||  |||| || |||||||| ||||||    
T  197218 aaaatctgcaaagaaacacttaaatagtacacagtgacagac-aaatctcgccgcgtctg-tccgaatcgtgccataattttaa-cgtacgacccaaggt 197314  T
Q  158 acaacgaccttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcg 251  Q
    |||||| |||||||||||||||||  | |||||||||  ||| ||||||||||||||||| ||||||||||| |||||| |||||  ||||||||    
T  197315 acaacgtccttatccacaaatcgcgccacgccagtactaaattgcgccgcgatttgcctttagcaaaaacattcattctgccaagagaaatcgcg 197409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 283
Target Start/End: Original strand, 40122529 - 40122738
Alignment:
Q  72 aacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatc 171  Q
    ||||||||||||||||||| |||||||| |||| ||| |||||| | | ||||||| |||||| || || ||||||||| |||||||| || ||||||||    
T  40122529 aacacttaaatagtacacagtgacagacaaaatcgcgtcgcgctag-tgaaaatcgcgccacggttgaa-gcgtacgacccaaggtacgacaaccttatc 40122626  T
Q  172 cacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagca-aaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgc 270  Q
    |||||||||  || |||| | |||||||| ||| |||||||||||||||| ||| |||||||||| || | |||||||||| || | ||| |||||| ||    
T  40122627 cacaaatcgtgtcacgcctgcaccaatcgtgccacgatttgccttcagcagaaaccatccattctgcc-accaaaatcgcgccacgcctcccaaaattgc 40122725  T
Q  271 gccacgattttgg 283  Q
    | ||| |||||||    
T  40122726 ggcacaattttgg 40122738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 281
Target Start/End: Original strand, 8551117 - 8551327
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaatt-gcgccgcgcttgcta--aaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacc 166  Q
    ||||||||||||||||||||| |||||||| ||| | ||| |||||   |||  ||||||| |||||| || || ||||||||| |||||||| || |||    
T  8551117 gaaacacttaaatagtacacagtgacagacaaaaatcgcgtcgcgc---ctaggaaaatcgcgccacggttgaa-gcgtacgacccaaggtacgacaacc 8551212  T
Q  167 ttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagca-aaaacatccattctaccaagcaaaatcgcgtcatggctctcaa 264  Q
    ||||||||||||||| || || | | ||  ||||| ||| ||||||| |||||||| ||| |||||||||| || |||||||||||| || | |||| ||    
T  8551213 ttatccacaaatcgcgtcacggctgcacaaaatcgtgccacgatttg-cttcagcagaaaccatccattctgcc-agcaaaatcgcgccacgcctctgaa 8551310  T
Q  265 aatcgcgccacgatttt 281  Q
    |||||||||||||||||    
T  8551311 aatcgcgccacgatttt 8551327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 29652097 - 29652180
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |  || ||||  ||||||||||||| | ||||||||| ||||    
T  29652097 caaccctaaagttacctcctttgtaatccaagtttctctcttttcaagctctccttcaaaatctgcacaaaaacacttatatag 29652180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 44455077 - 44454990
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtac 87  Q
    |||||||||||||||||||||||   | |||||||||| |||||| |||||||  ||||||||||||| |  ||||||||||||||||    
T  44455077 caaccctaaagttacctcctttgatttaccaagtttctctctctacaacctctccttcaaaatctgcacaagaacacttaaatagtac 44454990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 37167857 - 37167721
Alignment:
Q  140 aagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagca-aaaacatccattctacc 238  Q
    ||||||||||| |||||||| || |||||||||||||||| ||     || | |||||||||||| |||||||||||||||| ||| ||| | |||| ||    
T  37167857 aagcgtacgacccaaggtacgacaaccttatccacaaatcaca-----cctgcaccaatcgcgccacgatttgccttcagcagaaaccatacgttctgcc 37167763  T
Q  239 aagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    || |||||||| |||| | | || ||||||||||||| |||||    
T  37167762 aa-caaaatcgtgtcacgccactgaaaatcgcgccacaatttt 37167721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21536383 - 21536300
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| || ||  || ||||  ||||||||||||| |  |||||||| ||||    
T  21536383 caaccctaaagttacctcctttgtaatccaagtttctctcacttcaagctctccttcaaaatctgcacaagaacacttatatag 21536300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37070051 - 37070134
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||   | ||||| ||||||||||||| |  |||||||| ||||    
T  37070051 caaccataaagttacctcctttgtaatccaagtttctctctcttccagctctacttcaaaatctgcacaagaacacttatatag 37070134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 834497 - 834541
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgc 114  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||    
T  834497 gaaacacttaaatagtacacagtgacagacaaaatcgcgccgcgc 834541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24202578 - 24202534
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||||    
T  24202578 caaccctaaagttccctcctttgtaatccaagtttctctctctaa 24202534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49918266 - 49918194
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   ||| |||||||| |||||  || ||||| ||||||||||||||||||    
T  49918266 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctacttcaaaatctgcaaagaa 49918194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 281
Target Start/End: Original strand, 3847450 - 3847567
Alignment:
Q  164 accttatccacaaatcgcatcgcgccagtaccaa-tcgcgccgcgatttgccttcagcaaaaac-atccattctaccaagcaaaatcgcgtcatggctct 261  Q
    ||||||||||||||||||  | |||| | || || |||||||  ||||| ||||||||| |||| ||||||||| ||| ||||||||||| |||| ||||    
T  3847450 accttatccacaaatcgcgccacgcccgcacaaaatcgcgccatgattt-ccttcagcagaaactatccattctgcca-gcaaaatcgcgccatgcctct 3847547  T
Q  262 caaaatcgcgccacgatttt 281  Q
     |||||| ||||||||||||    
T  3847548 gaaaatcacgccacgatttt 3847567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13598684 - 13598750
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||| ||||||||||||||||| ||||||| ||||| |||||  || ||||  |||||||||||||    
T  13598684 caaccataaagttacctcctttgtaatccaattttctctctcttcaagctctccttcaaaatctgca 13598750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13604435 - 13604393
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||    
T  13604435 caaccctaaagttccctcctttgtaatccaagtttctctctct 13604393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 47114678 - 47114594
Alignment:
Q  196 aatcgcgccgcgatttgccttcagcaaaaac-atccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    |||||||||  ||||||| ||||||| |||| ||||||||||||| ||||||||||  || | |||| |||||||||||||||||||    
T  47114678 aatcgcgccatgatttgc-ttcagcagaaaccatccattctacca-gcaaaatcgcaccacgcctctgaaaatcgcgccacgatttt 47114594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 834550 - 834661
Alignment:
Q  140 aagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagca-aaaacatccattctac 237  Q
    ||||||||||| |||||||| || |||||||||||||||||  || |||| | ||  ||||||||| ||||||| ||| |||| ||| |||||||||| |    
T  834550 aagcgtacgacccaaggtacgacaaccttatccacaaatcgtgtcacgcctgcacagaatcgcgccacgatttg-ctttagcagaaaccatccattctgc 834648  T
Q  238 caagcaaaatcgcg 251  Q
    | ||||||||||||    
T  834649 c-agcaaaatcgcg 834661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 34602907 - 34602964
Alignment:
Q  121 aaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaat 178  Q
    ||||||| ||||||||| |  | ||||||| |||||||||||||||||||||| ||||    
T  34602907 aaaatcgcgccacgattcattgtgtacgacccaaggtacaacgaccttatccagaaat 34602964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 34603176 - 34603119
Alignment:
Q  121 aaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaat 178  Q
    ||||||| ||||||||| |  | ||||||| |||||||||||||||||||||| ||||    
T  34603176 aaaatcgcgccacgattcattgtgtacgacccaaggtacaacgaccttatccagaaat 34603119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 7482842 - 7482878
Alignment:
Q  144 gtacgacacaaggtacaacgaccttatccacaaatcg 180  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  7482842 gtacgacccaaggtacaacgaccttatccagaaatcg 7482878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10925140 - 10925068
Alignment:
Q  1 caaccctaaagttacctcctttg-caatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||    ||||||||||| |||||  || ||||  ||||||||||||||||||    
T  10925140 caaccctaaagttacctcctttgattttccaagtttctctctcttcaagctctccttcaaaatctgcaaagaa 10925068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19358653 - 19358609
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  19358653 caaccctagagttccctcctttgtaatccaagtttctctctctaa 19358609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19366117 - 19366073
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  19366117 caaccctagagttccctcctttgtaatccaagtttctctctctaa 19366073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37503805 - 37503877
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||| ||||||||||   ||| |||||||| |||||  |||||||  ||||||||||||||||||    
T  37503805 caaccctaaagtcacctcctttgatttcccaagtttctctctcttcaacctctccttcaaaatctgcaaagaa 37503877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 19752207 - 19751890
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||  |||||| | |||||||||||||||| ||||||||||||||||||||    
T  19752207 caaccctaaagttacctcctttgcgatccaagtttctctctctaaaacctctccttcaaa-tatgcaaagaaacacttatatagtacacaatgacagacg 19752109  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-tc 199  Q
    |||| ||||||||| |||||||||||||||||||||||  | |||||||| |||||||||||  |||||||||| ||||||  | ||||||||| || ||    
T  19752108 aaatcgcgccgcgcctgctaaaaatcgtgccacgatttttaacgtacgacccaaggtacaacatccttatccaccaatcgcgccacgccagtactaaatc 19752009  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||  |    
T  19752008 gcgccgcgatttgccttcagcaaaaacatccattctgccaagcaaaatcgcgtcacggctcccaaaatcgtgccacgattttggcctttacagaatcaga 19751909  T
Q  300 aatttgaagtcaattacaa 318  Q
    |||||||||||||||||||    
T  19751908 aatttgaagtcaattacaa 19751890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 6598810 - 6598656
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||||||| | ||||| || |||| |||||||||  |  |||| ||| |||||| || || ||||| | | |||||||| || ||||||    
T  6598810 gaaacacttaaatagtacatagtgacaaacaaaatcgcgccgcgccagagaaaa-tcgcgccacggttgaa-gcgtatggcgcaaggtacgacaacctta 6598713  T
Q  170 tccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagcaaaaac 226  Q
    |||||||||||| || | || | |||||||||||| |||||||||||||||| ||||    
T  6598712 tccacaaatcgcgtcacacctgcaccaatcgcgccacgatttgccttcagcataaac 6598656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 6674263 - 6674109
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||||||| | ||||| || |||| |||||||||  |  |||| ||| |||||| || || ||||| | | |||||||| || ||||||    
T  6674263 gaaacacttaaatagtacatagtgacaaacaaaatcgcgccgcgccagagaaaa-tcgcgccacggttgaa-gcgtatggcgcaaggtacgacaacctta 6674166  T
Q  170 tccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagcaaaaac 226  Q
    |||||||||||| || | || | |||||||||||| |||||||||||||||| ||||    
T  6674165 tccacaaatcgcgtcacacctgcaccaatcgcgccacgatttgccttcagcataaac 6674109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5702293 - 5702210
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  |||||||  ||||||||||||| |  |||||||| ||||    
T  5702293 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaacctctccttcaaaatctgcacaagaacacttatatag 5702210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 4456312 - 4456395
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  4456312 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctcttcttcaaaatctgcacaagaacacttatatag 4456395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7412624 - 7412707
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  7412624 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 7412707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 41365179 - 41365289
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||  |   ||||||| ||||||  || ||||||| ||| |||||||| || ||||||    
T  41365179 gaaacacttaaatagtacacagtgacagacaaaatcgcgccgcgccag-agaaaatcgcgccacg-gttgaagcgtatgacccaaggtacgacaacctta 41365276  T
Q  170 tccacaaatcgca 182  Q
    ||||| |||||||    
T  41365277 tccaccaatcgca 41365289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43036340 - 43036268
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   ||| |||||||| |||||  ||||||| |||||||||||||||||||    
T  43036340 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaacctctcattcaaaatctgcaaagaa 43036268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4696421 - 4696355
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    |||||||||||||| |||||||| ||||||||||||| |||||  || ||||  |||||||||||||    
T  4696421 caaccctaaagttatctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgca 4696355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23799389 - 23799347
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  23799389 caaccctaaagttacctcctttgtaatccaagtttctctctct 23799347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19175567 - 19175531
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19175567 caaccctaaagttacctcctttgtaatccaagtttct 19175531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1261763 - 1261719
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  1261763 caaccctagagttccctcctttgtaatccaagtttctctctctaa 1261719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42498111 - 42498039
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   | |||||||||| |||||  || ||||  ||||||||||||||||||    
T  42498111 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctccttcaaaatctgcaaagaa 42498039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 31300408 - 31300092
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||| |||| |||||||||| |||||||||    
T  31300408 caaccttaaagttacctcctttgcaatccaagtttctctctctaaaacctcttcttcaaaatctgcaaagaaacccttatatagtacacagtgacagacg 31300309  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtacc-aatc 199  Q
    |||| ||||||||| || | |||||||| |||||||||||| |||||||| |||| ||||||| |||||||||| ||||||  | |||||||||| ||||    
T  31300308 aaatggcgccgcgcctg-ttaaaatcgtaccacgatttaaa-cgtacgacccaagatacaacgtccttatccaccaatcgcgccacgccagtaccaaatc 31300211  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    |||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||| |||| |||||||       
T  31300210 gcgctgcaatttgccttcagcaaaaacatccattctgccaagcaaaatcgcgtcacggcttccaaaatcgcgccacgattttggcctttgcagaatcggt 31300111  T
Q  300 aatttgaagtcaattacaa 318  Q
    |||||||||||||||||||    
T  31300110 aatttgaagtcaattacaa 31300092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 24553340 - 24553027
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaa-tctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||  |||  ||||||| |||||||||||||||||| |||||||||| ||||||||    
T  24553340 caacccttaagttacctcctttgtaatccaagtttctttctctaaaagttctccttcaaaaatctgcaaagaaacacttatatagtacacagtgacagac 24553241  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-t 198  Q
    ||||| ||||||||| || | | ||||| |||||| | |||| |||||||| |||||||||||| |||||||||||||||||  | ||| ||||| || |    
T  24553240 gaaatcgcgccgcgcctg-tcagaatcgcgccacggtataaa-cgtacgacccaaggtacaacggccttatccacaaatcgcgccacgctagtactaaat 24553143  T
Q  199 cgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctt 298  Q
    |  ||| |||||||||||||||||||||||||||||| |||||  ||||||| ||| ||||| ||||||||||||||| |||||| ||||||| |||||     
T  24553142 catgccacgatttgccttcagcaaaaacatccattctgccaagagaaatcgcatcacggctcccaaaatcgcgccacggttttggcctttacaaaatctg 24553043  T
Q  299 aaatttgaagtcaatt 314  Q
    ||||||||||||||||    
T  24553042 aaatttgaagtcaatt 24553027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 17003772 - 17003459
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    |||||||||||||| |||||||| ||||||||||||| ||||| ||| ||||  ||||||||||||||||||||||||| |||||||||| ||| |||||    
T  17003772 caaccctaaagttatctcctttgtaatccaagtttctctctctcaaagctctccttcaaaatctgcaaagaaacacttatatagtacacagtgaaagacg 17003673  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatc 199  Q
    |||| ||||||||| || | | ||||| ||||| |||| || |||||||   ||| ||||||| ||||||||||||||||  || |||||||||  ||||    
T  17003672 aaatcgcgccgcgcctg-tcagaatcgcgccacaattttaatcgtacgatctaagatacaacggccttatccacaaatcgtgtcacgccagtactaaatc 17003574  T
Q  200 gcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctta 299  Q
    | ||||||||||| |||||||||||||||||||||| |||||  ||||||||||| ||||| |||||| | |||| |||||||| ||||||||||||  |    
T  17003573 gagccgcgatttgtcttcagcaaaaacatccattctgccaagagaaatcgcgtcacggctcccaaaattgggccaggattttggcctttacagaatcaga 17003474  T
Q  300 aatttgaagtcaatt 314  Q
    |||||||||||||||    
T  17003473 aatttgaagtcaatt 17003459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 58 - 240
Target Start/End: Original strand, 28832584 - 28832765
Alignment:
Q  58 aaaatctgcaaagaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggt 157  Q
    |||||||| |||||||||||||||||||||||| ||| |||| |||| ||| ||||| ||| | || |||||||||||||| || |||||||| ||||||    
T  28832584 aaaatctgtaaagaaacacttaaatagtacacagtgatagac-aaatcgcgtcgcgcctgccagaa-tcgtgccacgattttaaacgtacgacccaaggt 28832681  T
Q  158 acaacgaccttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagcaaaaacatccattctaccaa 240  Q
    ||||||||||||||||||||||||  | | ||| |||  |||||||||||||||| |||||||||||||||||||||| |||||    
T  28832682 acaacgaccttatccacaaatcgcgccacaccaatactaaatcgcgccgcgattttccttcagcaaaaacatccattccaccaa 28832765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 42127183 - 42127008
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaa-tctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    ||||| ||||||||||||||||| |||||||||||||  |||||||||||||  ||||||| | |||||||||||||||  |||||||||| ||||||||    
T  42127183 caaccttaaagttacctcctttgtaatccaagtttctcactctaaaacctctccttcaaaactgtgcaaagaaacacttgtatagtacacagtgacagac 42127084  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaa 176  Q
    ||||| ||||||||| |  | | ||||| |||| ||||| || |||||||| |||||||||||| ||||||||||||    
T  42127083 gaaatcgcgccgcgcct-atcagaatcgcgccatgatttcaaacgtacgacccaaggtacaacggccttatccacaa 42127008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 281
Target Start/End: Complemental strand, 31182811 - 31182600
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaatt-gcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctt 168  Q
    ||||||||||||||||||||| |||||||| ||| | |||| |||| || | ||||||| |||||| || || ||||||||| |||||||| || |||||    
T  31182811 gaaacacttaaatagtacacagtgacagacaaaaatcgcgctgcgcctg-tgaaaatcgcgccacggttgaa-gcgtacgacccaaggtacgacaacctt 31182714  T
Q  169 atccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagcaaaaa-catccattctaccaagcaaaatcgcgtcatggctctcaaaa 266  Q
    ||||||||||||| || | || | ||  ||||||||| ||||||| |||||||||||| |||||||| | |||   ||||||||| || | |||| ||||    
T  31182713 atccacaaatcgcgtcactcctgcacaaaatcgcgccacgatttg-cttcagcaaaaaccatccattatgccagcaaaaatcgcgccacgtctctgaaaa 31182615  T
Q  267 tcgcgccacgatttt 281  Q
    |||||| ||||||||    
T  31182614 tcgcgctacgatttt 31182600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 283
Target Start/End: Complemental strand, 16451879 - 16451716
Alignment:
Q  120 aaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttca 218  Q
    ||||||||| ||||||||| ||||||| ||| ||| |||||||  ||||||||| ||||||| || |||| ||||  ||||||||| |||| |  |||||    
T  16451879 aaaaatcgtaccacgattt-aagcgtatgacccaatgtacaacagccttatccagaaatcgcgtcacgcctgtacaaaatcgcgccacgatatttcttca 16451781  T
Q  219 gca-aaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttgg 283  Q
    ||| ||| |||||||||| ||||| ||||||||| || | ||| ||||||||| | | ||||||||    
T  16451780 gcagaaaccatccattctgccaag-aaaatcgcgacacgcctcccaaaatcgcactatgattttgg 16451716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 11181645 - 11181574
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    ||||| ||||||||||||||||| || |||||||||| |||||  || ||||| ||||||| ||||||||||    
T  11181645 caaccataaagttacctcctttgtaaaccaagtttctctctcttcaagctctacttcaaaaactgcaaagaa 11181574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 11916785 - 11916702
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| || ||  || ||||  ||||||||||||| |  |||||||| ||||    
T  11916785 caaccctaaagttacctcctttgtaatccaagtttctctcacttcaagctctccttcaaaatctgcacaagaacacttatatag 11916702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 14520514 - 14520597
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| |||| |||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  14520514 caaccctaaagttacctcctttgtaatctaagtttctctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 14520597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16649873 - 16649959
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagta 86  Q
    |||||||||||||||||||||||   ||| ||||||   |||||  ||||| | |||||||||||||||||||||||||| ||||||    
T  16649873 caaccctaaagttacctcctttgatttcccaagttttcctctcttgaacctatcattcaaaatctgcaaagaaacacttatatagta 16649959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28832541 - 28832587
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaa 47  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||||    
T  28832541 caactctaaagttacctcctttgtaatccaagtttctctctctaaaa 28832587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36932161 - 36932119
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  36932161 caaccctaaagttccctcctttgcaatccaagtttctctctct 36932119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 9353144 - 9353103
Alignment:
Q  2 aaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  9353144 aaccctaaagttacctcctttgtaatccaagtttctctctct 9353103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 8566277 - 8566321
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgc 114  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||    
T  8566277 gaaacacttaaatagtacacagtgacagacaaaatcgcgccgcgc 8566321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12083990 - 12083954
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12083990 caaccctaaagttacctcctttgtaatccaagtttct 12083954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 15464818 - 15464900
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaata 83  Q
    ||||||||||||| ||| ||||| ||||||||||||| |||||  || ||||  | ||||||||||| |  ||||||||||||    
T  15464818 caaccctaaagtttccttctttgtaatccaagtttctctctcttcaagctctcctccaaaatctgcacaagaacacttaaata 15464900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 533686 - 533603
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||||||||||||   | |||| ||||| |||||  |||||||  ||||||||||||||| ||||||||| ||||    
T  533686 caaccctaaagttacctcctttgatttcccaaatttctctctcttcaacctctccttcaaaatctgcaaa-aaacacttatatag 533603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38219686 - 38219730
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  38219686 caaccctagagttccctcctttgtaatccaagtttctctctctaa 38219730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 3323493 - 3323180
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaa-tctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    ||||||||||||||||||||||| |||| |||||| | ||||||||| ||||   |||||| ||||||||||||||||||||||||||||| ||||||||    
T  3323493 caaccctaaagttacctcctttgtaatcgaagtttgtctctctaaaatctctctctcaaaaatctgcaaagaaacacttaaatagtacacagtgacagac 3323394  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-t 198  Q
     |||| ||||||||| || | | |||||||||| ||||| || |||||||| |||||||||||| |||||||||||||||||  | ||||||||| || |    
T  3323393 -aaatcgcgccgcgcctg-tcagaatcgtgccatgattttaaacgtacgacccaaggtacaacgtccttatccacaaatcgcgccacgccagtactaaat 3323296  T
Q  199 cgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctt 298  Q
    |||||||| |||||||||||||||||||||||||||| |||||  ||||||||||| || || |||||||||| || |||||||| |||| |||||||      
T  3323295 cgcgccgcaatttgccttcagcaaaaacatccattctgccaagagaaatcgcgtcacggatcccaaaatcgcgtcatgattttggcctttgcagaatcag 3323196  T
Q  299 aaatttgaagtcaatt 314  Q
    ||||||||||||||||    
T  3323195 aaatttgaagtcaatt 3323180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 3328159 - 3327848
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctct-aattcaaaatctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    |||||||||||||| |||||||  ||||||||||||| ||||||||| ||||   |  ||||||| |||||||||||||||||||||| || ||||||||    
T  3328159 caaccctaaagttatctcctttctaatccaagtttctctctctaaaagctctctctaaaaaatctacaaagaaacacttaaatagtac-cagtgacagac 3328061  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caat 198  Q
     |||| ||||||||| || | | |||||||||||||||| || |||| ||| |||||||||||| |||||||||||||||||  | ||||| |||  |||    
T  3328060 -aaatcgcgccgcgcctg-tcagaatcgtgccacgattttaaacgtatgacccaaggtacaacgtccttatccacaaatcgcgccacgccaatactaaat 3327963  T
Q  199 cgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctt 298  Q
    |||| || ||||||||||||| ||||||||||||||| |||||  ||||||||||| |||||||||||||||||||||||||||| |||| |||||||      
T  3327962 cgcg-cgtgatttgccttcagtaaaaacatccattctgccaagagaaatcgcgtcacggctctcaaaatcgcgccacgattttggcctttgcagaatcag 3327864  T
Q  299 aaatttgaagtcaatt 314  Q
    ||||||||||||||||    
T  3327863 aaatttgaagtcaatt 3327848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 314
Target Start/End: Original strand, 37466584 - 37466891
Alignment:
Q  6 ctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacgaaatt 105  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||| |||||||||||||| |||||||||| |||||||| ||||     
T  37466584 ctaaagttacctcctttgtaatccaagtttctctctctaaaacctcttcttcaaaatctccaaagaaacacttacatagtacacagtgacagacaaaatc 37466683  T
Q  106 gcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-tcgcgcc 204  Q
    | |  |||| || | | ||||| |||||| | |||| | |||||| |||||||||||||| |||||||||||||||  | ||||||||| || ||| |||    
T  37466684 gtgttgcgcctg-tcagaatcgcgccacggtataaa-catacgactcaaggtacaacgactttatccacaaatcgcgccacgccagtactaaatcgtgcc 37466781  T
Q  205 gcgatttgccttcagcaaaaac-atccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatcttaaatt 303  Q
    ||| ||||||||||||| |||| ||||||||| ||| | |||||||||||| ||||| ||||| |||||||||||||||  ||||||| ||||  |||||    
T  37466782 gcggtttgccttcagcagaaaccatccattctgccatg-aaaatcgcgtcacggctcccaaaaccgcgccacgattttgacctttacaaaatcagaaatt 37466880  T
Q  304 tgaagtcaatt 314  Q
    |||||||||||    
T  37466881 tgaagtcaatt 37466891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 6794517 - 6794222
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacg 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||||||||     
T  6794517 caaccctaaagttacctcctttgtaatccaagtttctctctctaaaacctctccttcaaaatctgcaaagaaacacttatatagtacacagtgacagaca 6794418  T
Q  101 aaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatcg 200  Q
    |||| ||| | ||| || | |||||| ||||||||||||||  ||||||| |||||||||| ||||||||||| ||                    ||||    
T  6794417 aaatcgcgtcacgcctg-ttaaaatcatgccacgatttaaa-tgtacgacccaaggtacaatgaccttatccaaaa--------------------atcg 6794340  T
Q  201 cgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatcttaa 300  Q
    |||| |||||| ||||||| ||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||| ||||||||| ||| |||||||   |    
T  6794339 cgccacgattttccttcagtaaaaacatccattctgccaagaaaaatcgcgtcacggctcccaaaatcgcgccatgattttggtttttgcagaatcacta 6794240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25929198 - 25929115
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| |||| |||||||| || ||  || ||||| |||||||||| |||||||||||||| ||||    
T  25929198 caaccctaaagttacctcctttgtaatctaagtttctctcacttcaaactctacttcaaaatctacaaagaaacacttatatag 25929115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 40592584 - 40592501
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || |||| |||||||||||||| |  |||||||| ||||    
T  40592584 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctcattcaaaatctgcacaagaacacttatatag 40592501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 8126920 - 8126997
Alignment:
Q  7 taaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||| | ||||| ||||||||||||| ||||||||| ||||  ||||||||||||||| ||||||||| ||||    
T  8126920 taaagttactttctttgtaatccaagtttctctctctaaaaactctccttcaaaatctgcaaataaacacttatatag 8126997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 760616 - 760475
Alignment:
Q  140 aagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-tcgcgccgcgatttgccttcagcaaaaac-atccattctac 237  Q
    ||||||||||| |||||||| || |||||||||||||||||| || ||   | || || ||||  | |||||||| |||||||||||| ||||||||| |    
T  760616 aagcgtacgacccaaggtacgacaaccttatccacaaatcgcgtcacggttgcacaaaatcgcatcacgatttgc-ttcagcaaaaaccatccattctgc 760518  T
Q  238 caagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    || ||||||||||| || | |||| |||||||||||||||||||    
T  760517 ca-gcaaaatcgcgccacgcctctgaaaatcgcgccacgatttt 760475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1736106 - 1736023
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  1736106 caaccctaaagttacctcctttgtaatccaagtttctctctctccaaactctccttcaaaatctgcataagaacacttatatag 1736023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39032357 - 39032274
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||| ||||||| ||||| |  |||||||| ||||    
T  39032357 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctacttcaaaaactgcacaagaacacttatatag 39032274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 8370291 - 8370225
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  |||||||||||||    
T  8370291 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctcttcttcaaaatctgca 8370225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27974754 - 27974688
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  |||||||||||||    
T  27974754 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgca 27974688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 281
Target Start/End: Complemental strand, 46860051 - 46859892
Alignment:
Q  121 aaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaa-tcgcgccgcgatttgccttcag 219  Q
    ||||||| |||||| ||||  | ||||||  |||||||||||||||||||||| ||||||  || |||  | || || ||||||| |||||||| |||||    
T  46860051 aaaatcgcgccacggtttattgtgtacgatccaaggtacaacgaccttatccagaaatcgtgtcacgct-gcacaaaatcgcgccacgatttgc-ttcag 46859954  T
Q  220 caaaaac-atccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    || |||| ||||||| | ||| ||||||||||| |||| |||| |||||||||||||||||||    
T  46859953 cagaaaccatccattttgcca-gcaaaatcgcgccatgcctctgaaaatcgcgccacgatttt 46859892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 9581052 - 9580913
Alignment:
Q  140 aagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caatcgcgccgcgatttgccttcagca-aaaacatccattctac 237  Q
    ||||||||||| |||||||| || |||||||||| ||||||| || |||| |  |  ||||||||| ||||||| |||||||| ||| |||||||||| |    
T  9581052 aagcgtacgacccaaggtacgacaaccttatccataaatcgcgtcacgcctgcccaaaatcgcgccacgatttg-cttcagcagaaaccatccattctgc 9580954  T
Q  238 caagcaaaatcgcgtcatggctctcaaaatcgcgccacgatt 279  Q
    | ||||||||| || || | |||| |||||||||||||||||    
T  9580953 c-agcaaaatcacgccacgcctctgaaaatcgcgccacgatt 9580913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21711506 - 21711588
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  21711506 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctct-cttcaaaatctgcacaagaacacttacatag 21711588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 24694968 - 24694885
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  24694968 caaccctaaagttacctcctttgtaatccaaatttctctctcttcaagctcttcttcaaaatctgcacaagaacacttatatag 24694885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26299272 - 26299323
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctct 52  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||| ||||    
T  26299272 caaccctaaagttacctcctttataatccaagtttctctctctaaaagctct 26299323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 30709599 - 30709516
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||| |||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  30709599 caactctaaagttacctcctttgtaatccaagtttctgtctcttcaagctctccttcaaaatctgcacaagaacacttatatag 30709516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 47923702 - 47923623
Alignment:
Q  5 cctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  47923702 cctaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 47923623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27026990 - 27027056
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| ||||||||||| | |||||  || ||||  |||||||||||||    
T  27026990 caaccctaaagttacctcctttgtaatccaagtttttctctcttcaagctcttcttcaaaatctgca 27027056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33386477 - 33386395
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaata 83  Q
    |||||||||||||  |||||||| ||||||||||||| |||||  || ||||| | ||||||||||| |  ||||||||||||    
T  33386477 caaccctaaagttctctcctttgtaatccaagtttctctctcttcaagctctactccaaaatctgcacaagaacacttaaata 33386395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16264633 - 16264669
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  16264633 caaccctaaagttacctcctttgtaatccaagtttct 16264669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 39153761 - 39153853
Alignment:
Q  144 gtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagca-aaaacatccattct 235  Q
    ||||||| |||||||| || |||||||||| ||||||| || |||| | || ||||||| | || ||||||||||||| ||| ||||||||||    
T  39153761 gtacgacccaaggtacgacaaccttatccataaatcgcgtcacgcctgcacaaatcgcgtcacgttttgccttcagcagaaaccatccattct 39153853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48438499 - 48438535
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  48438499 caaccctaaagttacctcctttgtaatccaagtttct 48438535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1417293 - 1417242
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctct 52  Q
    ||||||||||||||||||||||| ||| ||||||| | ||||||||| ||||    
T  1417293 caaccctaaagttacctcctttgtaattcaagtttttctctctaaaaactct 1417242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27453242 - 27453284
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||    
T  27453242 caaccctaaagttccctcctttgtaatccaagtttctctctct 27453284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27986258 - 27986216
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||    
T  27986258 caaccctaaagttccctcctttgtaatccaagtttctctctct 27986216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37725959 - 37726001
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||    
T  37725959 caaccctaaagtttcctcctttgtaatccaagtttctctctct 37726001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 40844939 - 40845005
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| |||| |||||||| | ||| ||| ||||  |||||||| ||||    
T  40844939 caaccctaaagttacctcctttgtaatctaagtttctctatcttaaaactctccttcaaaatttgca 40845005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 41820186 - 41820270
Alignment:
Q  196 aatcgcgccgcgatttgccttcagcaaaaac-atccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    ||||| ||| |||||||| ||||||| |||| ||||||||| ||| ||||||||||| || | |||| |||||||||||||||||||    
T  41820186 aatcgtgccacgatttgc-ttcagcagaaaccatccattctgcca-gcaaaatcgcgccacgcctctgaaaatcgcgccacgatttt 41820270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 29682197 - 29682153
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgc 114  Q
    ||||||||||||||||||||  |||||||| |||| |||||||||    
T  29682197 gaaacacttaaatagtacacggtgacagacaaaatcgcgccgcgc 29682153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29812980 - 29812908
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   | |||||||||| |||||  |||||||  |||||||||| |||||||    
T  29812980 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaacctcttcttcaaaatctacaaagaa 29812908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36029377 - 36029413
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  36029377 caaccctaaatttacctcctttgtaatccaagtttct 36029413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 51398731 - 51398659
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   | |||||||||| |||||  |||||||  |||||||||| |||||||    
T  51398731 caaccctaaagttacctcctttgatttcccaagtttctatctcttcaacctctccttcaaaatctacaaagaa 51398659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 10445280 - 10444968
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctct-aattcaaaatctgcaaagaaacacttaaatagtacacaatgacagac 99  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||  |||| | |  ||||||| ||||||||||||||||||||||||| ||||| ||    
T  10445280 caaccctaaagttacctcctttgtaatctaagtttctctctctaaacactctcactaaaaaatctacaaagaaacacttaaatagtacacagtgacaaac 10445181  T
Q  100 gaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtac-caat 198  Q
     |||| ||||||||  || | | ||| |||||| ||||| || ||||| || |||||||| ||| |||||||||||||||||  | |||||  ||  |||    
T  10445180 -aaatcgcgccgcgtctg-tcagaattgtgccatgattttaa-cgtacaacccaaggtactacgtccttatccacaaatcgcgccacgccaagactaaat 10445084  T
Q  199 cgcgccgcgatttgccttcagcaaaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaatctt 298  Q
    ||||||||||| |||||||||||||||||| |||||| |||||  ||||||||||| |||| ||||||||||||||||||||||| |||| ||||||       
T  10445083 cgcgccgcgatatgccttcagcaaaaacattcattctgccaagagaaatcgcgtcacggctttcaaaatcgcgccacgattttggcctttgcagaatgag 10444984  T
Q  299 aaatttgaagtcaatt 314  Q
    ||||||||||||||||    
T  10444983 aaatttgaagtcaatt 10444968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 34140101 - 34140223
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||||||||| |||||||| |||| |||||||||  | ||||||||| || ||| || || ||||||||| |||||||| || ||||||    
T  34140101 gaaacacttaaatagtacacagtgacagacaaaatcgcgccgcgccag-taaaaatcgcgctacggttgaa-gcgtacgacccaaggtacgacaacctta 34140198  T
Q  170 tccacaaatcgcatcgcgccagtac 194  Q
    |||||||||||| ||||||| ||||    
T  34140199 tccacaaatcgcgtcgcgcctgtac 34140223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33118419 - 33118502
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||  ||||||||||||| |  |||||||| ||||    
T  33118419 caaccctaaagttacctcctttgtaatccaagtttctctctctaaaagctcttcttcaaaatctgcacaagaacacttatatag 33118502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 283
Target Start/End: Original strand, 11151922 - 11152133
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    |||||||||||| |||||||| ||| |||| |||| |||  ||||  | | ||||||| ||||| | || |||||| |||| |||||||| || ||||||    
T  11151922 gaaacacttaaagagtacacagtgatagacaaaatcgcgatgcgccag-tgaaaatcgcgccac-agttgaagcgtgcgacccaaggtacgacaacctta 11152019  T
Q  170 tccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagca-aaaacatccattctaccaagcaaaatcgcgtcatggctctcaaaatc 268  Q
    |||||||| ||| || |||| | ||||||||| ||  ||||||||||||||| ||| |||||||||| || | |||||||||| || | ||| |||||||    
T  11152020 tccacaaaccgcgtcacgcctgcaccaatcgcaccatgatttgccttcagcagaaaccatccattctgcc-accaaaatcgcgccacgcctcccaaaatc 11152118  T
Q  269 gcgccacgattttgg 283  Q
     || |||||||||||    
T  11152119 acggcacgattttgg 11152133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 42362190 - 42362026
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||||||||| |||||||| |||| ||||||||||  | |||| ||||| ||||||| |  | ||||||| |||||||| || || |||    
T  42362190 gaaacacttaaatagtacacagtgacagacaaaatcgcgccgcgctacccaaaa-tcgtgtcacgattgat-gagtacgacccaaggtacgacaacgtta 42362093  T
Q  170 tccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagca-aaaacatccattct 235  Q
    |||||||||||| || |||| | ||||||| || |  | ||||||||||||| ||| ||||||||||    
T  42362092 tccacaaatcgcgtcacgcctgcaccaatctcgtcatgttttgccttcagcagaaaccatccattct 42362026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14698822 - 14698759
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatct 64  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||  ||||||||||    
T  14698822 caaccctaaagttacctcctttgtaatccaagtttctctctctaaaagctctccttcaaaatct 14698759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8389962 - 8389880
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaata 83  Q
    |||||||||||||| |||||||| ||||||||||||| |||||   | ||||| ||||||||||||| || ||||||||||||    
T  8389962 caaccctaaagttatctcctttgtaatccaagtttctctctcttccagctctacttcaaaatctgcacaggaacacttaaata 8389880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33528437 - 33528354
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  33528437 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 33528354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 40015208 - 40015295
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtac 87  Q
    ||||||||||||||||||||||| || || || ||||| |||||  || ||||| ||||||||||| | |||||||||||||||||||    
T  40015208 caaccctaaagttacctcctttgtaaacctaaatttctctctcttcaagctctacttcaaaatctgaacagaaacacttaaatagtac 40015295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 724074 - 724182
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||||||||| |||||||| |||| ||| |||||  | | ||||||| ||||||  || ||||||||||| |||||||| || | ||||    
T  724074 gaaacacttaaatagtacacagtgacagacaaaatcgcgtcgcgccag-tgaaaatcgcgccacg-gttgaagcgtacgacccaaggtacgacaatctta 724171  T
Q  170 tccacaaatcg 180  Q
    |||||||||||    
T  724172 tccacaaatcg 724182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28258990 - 28258927
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatct 64  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||    
T  28258990 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctcttcttcaaaatct 28258927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34389135 - 34389171
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34389135 caaccctaaagttacctcctttgtaatccaagtttct 34389171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39284802 - 39284730
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   ||| |||||||| |||||  |||||||  ||||||||||||||||||    
T  39284802 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaacctctccttcaaaatctgcaaagaa 39284730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 14634156 - 14634264
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccgcgcttgctaaaaatcgtgccacgatttaaagcgtacgacacaaggtacaacgacctta 169  Q
    ||||||||||||||| ||||| |||||||| |||| |||||||||    | ||||| | |||||| || || ||||||||| |||||||| || ||||||    
T  14634156 gaaacacttaaataggacacagtgacagacaaaatcgcgccgcgccaa-tgaaaat-gcgccacggttgaa-gcgtacgacccaaggtacgacaacctta 14634252  T
Q  170 tccacaaatcgc 181  Q
    ||||||||||||    
T  14634253 tccacaaatcgc 14634264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23078284 - 23078201
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||| |||||||||||||||| ||||||||||||| || ||  || ||||  ||||||||||||| |  |||||||| ||||    
T  23078284 caacccaaaagttacctcctttgtaatccaagtttctctcacttcaagctctccttcaaaatctgcacaagaacacttatatag 23078201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 10707064 - 10706982
Alignment:
Q  2 aaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||||||||||| |||| |||||||| |||||   | ||||  ||||||||||||| |  |||||||| ||||    
T  10707064 aaccctaaagttacctcctttgtaatctaagtttctctctcttccagctcttcttcaaaatctgcacaagaacacttatatag 10706982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20522506 - 20522548
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||||||||||||| |||| |||||||| |||||    
T  20522506 caaccctaaagttacctcctttgtaatctaagtttctctctct 20522548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36757575 - 36757509
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| ||| ||||||||| || ||  || ||||  |||||||||||||    
T  36757575 caaccctaaagttacctcctttgtaattcaagtttctctcacttcaagctctccttcaaaatctgca 36757509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 11690337 - 11690308
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagac 99  Q
    ||||||||||||||||||||||||||||||    
T  11690337 gaaacacttaaatagtacacaatgacagac 11690308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17865489 - 17865522
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  17865489 caaccctaaagttacctcctttgtaatccaagtt 17865522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21630229 - 21630265
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    |||| |||||||||||||||||| |||||||||||||    
T  21630229 caacactaaagttacctcctttgtaatccaagtttct 21630265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36318260 - 36318332
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   | |||||||||| |||||   ||||||  ||||||||||||||||||    
T  36318260 caaccctaaagttacctcctttgatttcccaagtttctctctcttttacctctccttcaaaatctgcaaagaa 36318332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 25861846 - 25861763
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||| ||||    
T  25861846 caaccctaaagttaccttctttgtaatccaagtttctctctctaaaagctctccttcaaaatctgcaaagaaacacttatatag 25861763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 42599384 - 42599281
Alignment:
Q  5 cctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagtacacaatgacagacgaaat 104  Q
    ||||||||||||||||||| ||||||||||||| || |||||| ||||  ||||||||||||||||||||||||| ||||||      ||||||||||||    
T  42599384 cctaaagttacctcctttgtaatccaagtttctctcactaaaagctctccttcaaaatctgcaaagaaacacttatatagta------gacagacgaaat 42599291  T
Q  105 tgcgccgcgc 114  Q
     |||||||||    
T  42599290 cgcgccgcgc 42599281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 46703058 - 46702976
Alignment:
Q  144 gtacgacacaaggtacaacgaccttatccacaaatcgcatcgcgccagtaccaatcgcgccgcgatttgccttcagcaaaaac 226  Q
    ||||||| |||||||||||||||||||||||||||||| || |||| | |||||||||||| |||||||||||||||| ||||    
T  46703058 gtacgacccaaggtacaacgaccttatccacaaatcgcgtcacgcctgcaccaatcgcgccacgatttgccttcagcagaaac 46702976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 42599232 - 42599114
Alignment:
Q  196 aatcgcgccgcgatttgccttcagcaaaaac-atccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgattttggtctttacagaa 294  Q
    ||||| ||||||||||||||||| || |||| ||||||||| ||||| || |||||||||  |||| ||||||| |||||||||||||  ||||||||||    
T  42599232 aatcgtgccgcgatttgccttcaacataaaccatccattctgccaag-aagatcgcgtcacagctcccaaaatcacgccacgattttgacctttacagaa 42599134  T
Q  295 tcttaaatttgaagtcaatt 314  Q
    ||  ||||||||||||||||    
T  42599133 tcagaaatttgaagtcaatt 42599114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 5269013 - 5268930
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  5269013 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 5268930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16623106 - 16623023
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||   | ||||  ||||||||||||| | ||||||||| ||||    
T  16623106 caaccctaaagttacctcctttgtaatccaagtttctctctcttctagctctccttcaaaatctgcacaaaaacacttatatag 16623023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10047665 - 10047731
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  |||||||||||||    
T  10047665 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgca 10047731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 54867463 - 54867548
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatagta 86  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  | ||||||||||| |  |||||||| ||||||    
T  54867463 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctcctccaaaatctgcacaagaacacttatatagta 54867548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 6743220 - 6743145
Alignment:
Q  9 aagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||| ||||||||||||| |||||  || ||||| ||||||||||||| |  |||||||| ||||    
T  6743220 aagttacctcctttgtaatccaagtttctctctcttcaagctctacttcaaaatctgcacaagaacacttatatag 6743145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16628685 - 16628602
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||||||||||| ||||| |||||   | ||||  ||||||||||| | | ||||||||| ||||    
T  16628685 caaccctaaagttacctcctttgcaatccaattttctctctcttctagctctccttcaaaatctgaacaaaaacacttatatag 16628602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3777833 - 3777875
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  3777833 caaccctaaagttacctcctttgtaatccaagtttctctctct 3777875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 8689308 - 8689226
Alignment:
Q  2 aaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||||||||||| ||||||||||||| || ||  || ||||  ||||||||||||| |  |||||||| ||||    
T  8689308 aaccctaaagttacctcctttgtaatccaagtttctctcacttcaagctctccttcaaaatctgcacaagaacacttatatag 8689226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 31985446 - 31985365
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaata 83  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||  || ||| | ||||||||||||| |  ||||||||||||    
T  31985446 caaccctaaagttccctcctttgtaatccaagtttctctctcttcaagctc-acttcaaaatctgcacaagaacacttaaata 31985365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 36315042 - 36314960
Alignment:
Q  2 aaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||||||||||| ||||||||||| | |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  36315042 aaccctaaagttacctcctttgtaatccaagtttatctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 36314960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 36329251 - 36329169
Alignment:
Q  2 aaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||||||||||| ||||||||||| | |||||  || ||||  ||||||||||||| |  |||||||| ||||    
T  36329251 aaccctaaagttacctcctttgtaatccaagtttatctctcttcaagctctccttcaaaatctgcacaagaacacttatatag 36329169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 12072880 - 12072813
Alignment:
Q  214 cttcagcaaaaac-atccattctaccaagcaaaatcgcgtcatggctctcaaaatcgcgccacgatttt 281  Q
    |||||||| |||| ||||||||| ||| ||||||||||| |||| |||| |||||||||||||||||||    
T  12072880 cttcagcagaaaccatccattctgcca-gcaaaatcgcgccatgcctctgaaaatcgcgccacgatttt 12072813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 39774118 - 39774034
Alignment:
Q  1 caaccctaaagttacctcctttg-caatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    |||||||||||||||||||||||  || |||||||||| |||||  || ||||| ||||||||||| | | ||||||||| ||||    
T  39774118 caaccctaaagttacctcctttgtaaacccaagtttctctctctttaaactctacttcaaaatctgaacataaacacttatatag 39774034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 41963973 - 41963937
Alignment:
Q  144 gtacgacacaaggtacaacgaccttatccacaaatcg 180  Q
    ||||||| |||||||||||||||||||||||||||||    
T  41963973 gtacgacccaaggtacaacgaccttatccacaaatcg 41963937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 18377644 - 18377715
Alignment:
Q  8 aaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacactta 79  Q
    ||||||| |||||||| |||||||||||||||||||  || ||||  ||||||| ||| | |||||||||||    
T  18377644 aaagttaactcctttgtaatccaagtttctttctcttcaagctctccttcaaaaactgaacagaaacactta 18377715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5396484 - 5396442
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    |||||||||||| |||||||||| ||||||||||||| |||||    
T  5396484 caaccctaaagtaacctcctttgtaatccaagtttctctctct 5396442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 47038739 - 47038777
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcg 108  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  47038739 gaaacacttaaatagtacacaatgacagacaaaactgcg 47038777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 5871658 - 5871617
Alignment:
Q  70 gaaacacttaaatagtacacaatgacagacgaaattgcgccg 111  Q
    ||||||||||||||||||||| |||||||| |||| ||||||    
T  5871658 gaaacacttaaatagtacacagtgacagacaaaatcgcgccg 5871617  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5143544 - 5143580
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    |||||||||||||||||||| || |||||||||||||    
T  5143544 caaccctaaagttacctcctctgtaatccaagtttct 5143580  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12739801 - 12739873
Alignment:
Q  1 caaccctaaagttacctcctttgcaatc-caagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   || ||||||||| |||||  |||||| | ||||||||||| ||||||    
T  12739801 caaccctaaagttacctcctttgatttctcaagtttctctctcttcaacctccacttcaaaatctgtaaagaa 12739873  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12748007 - 12748079
Alignment:
Q  1 caaccctaaagttacctcctttgcaatc-caagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   || ||||||||| |||||  |||||| | ||||||||||| ||||||    
T  12748007 caaccctaaagttacctcctttgatttctcaagtttctctctcttcaacctccacttcaaaatctgtaaagaa 12748079  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29254411 - 29254339
Alignment:
Q  1 caaccctaaagttacctcctttgcaatcc-aagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||| ||||||||   ||| |||||||| |||||| ||||||   ||||||||||||||||||    
T  29254411 caaccctaaagttatctcctttgatttcccaagtttctctctctacaacctcaccttcaaaatctgcaaagaa 29254339  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 56178887 - 56178959
Alignment:
Q  1 caaccctaaagttacctcctttgcaat-ccaagtttctttctctaaaacctctaattcaaaatctgcaaagaa 72  Q
    |||||||||||||||||||||||   | |||||||||| |||||  || ||||  ||||||||||||||||||    
T  56178887 caaccctaaagttacctcctttgatttcccaagtttctctctcttcaagctctctttcaaaatctgcaaagaa 56178959  T

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Target: scaffold0087 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36645 - 36579
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||||||||||||||||||||| ||||||||||||| |||||  || ||||  |||||||||||||    
T  36645 caaccctaaagttacctcctttgtaatccaagtttctctctcttcaagctctccttcaaaatctgca 36579  T

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Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 43774 - 43691
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgcaaagaaacacttaaatag 84  Q
    ||||||||||||||||||||||| ||||||||||||| |||||   | ||||  | ||||||||||| | ||||||||| ||||    
T  43774 caaccctaaagttacctcctttgtaatccaagtttctctctcttccagctctcctccaaaatctgcacaaaaacacttatatag 43691  T

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Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45483 - 45525
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  45483 caaccctaaagttacctcctttgtaatccaagtttctctctct 45525  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 85967 - 86003
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttct 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  85967 caaccctaaagttacctcctttgtaatccaagtttct 86003  T

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Target: scaffold0140 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8230 - 8188
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||    
T  8230 caaccctaaagttccctcctttgtaatccaagtttctctctct 8188  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5969 - 6035
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaaaacctctaattcaaaatctgca 67  Q
    ||||| ||||||||||||||||| ||||||| ||||| |||||  || ||||  |||||||||||||    
T  5969 caaccataaagttacctcctttgtaatccaattttctctctcttcaagctctccttcaaaatctgca 6035  T

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Target: scaffold0006; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 133092 - 133050
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctct 43  Q
    ||||||||||||| ||||||||| ||||||||||||| |||||    
T  133092 caaccctaaagttccctcctttgtaatccaagtttctctctct 133050  T

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Target: scaffold0188 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17761 - 17717
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  17761 caaccctagagttccctcctttgtaatccaagtttctctctctaa 17717  T

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Target: scaffold0188; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23854 - 23810
Alignment:
Q  1 caaccctaaagttacctcctttgcaatccaagtttctttctctaa 45  Q
    |||||||| |||| ||||||||| ||||||||||||| |||||||    
T  23854 caaccctagagttccctcctttgtaatccaagtttctctctctaa 23810  T

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