View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_4 (Length: 705)

Name: NF16757_low_4
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_4
NF16757_low_4
[»] chr2 (1 HSPs)
chr2 (1-701)||(44430495-44431193)


Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 701
Target Start/End: Original strand, 44430495 - 44431193
Alignment:
Q  1 acaaaacttttcttcaagtggggtttgtgctgcaaagtttagtggcaactaagaaatcataagagagggaagttagtttgaaaagctagcatactttttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44430495 acaaaacttttcttcaagtggggtttgtgctgcaaagtttagtggcaactaagaaatcataagagagggaagttagattgaaaagctagcatactttttc 44430594  T
Q  101 ttgtcaattctaatttgaaatccagtttaacatacgctttagctcggtgataaaagtataacattgtaacctcaagagacagacagtgtgttcaaatccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  44430595 ttgtcaattctaatttgaaatccagtttaacatacgctttagctcggtgataaaagtataacattgtaacctcaag----agacagtgtgttcaaatccc 44430690  T
Q  201 ctcgaaaacagtcgtaaaatgaccgttagtgccactttaataatagtnnnnnnnntaaggtacctgtgttttttatttatacgaatcgaagcgacaatga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||||||||    
T  44430691 ctcgaaaacagtcgtaaaatgaccgttagtgccactttaataatagtaaaaaaaattaggtacctgtgttttttatttatacgaatcgaagcgacaatga 44430790  T
Q  301 ccaattttccaagttactaaacttgattgttagtactatttgctaagaactagaaagcaacacttgcttttccaactgaaattatgaagtgatttcca-- 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  44430791 ccaattttccaagttactaaacttgattgttagtactatttgctaagaactagaaagcaacacttgcttttccaactgaaattatgaagtgatttccatt 44430890  T
Q  399 nnnnnnnnnnctagagtttcattgagtttgagtgtacaaaattgaaaaaagtttagttttgaagttaatgggcatccatcaatcatgcagaaattcataa 498  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44430891 tattttttttctagagtttcattgagtttgagtgtacaaaattgaaaaaagtttagttttgaagttaatgggcatccatcaatcatgcagaaattcataa 44430990  T
Q  499 acaaatgattgtgaaaagatattttcnnnnnnnnacaaactaaggttattcttttctttctgtattttcagtaaatatttgctttattttatggccacta 598  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44430991 acaaatgattgtgaaaagatattttcttttttttacaaactaaggttattcttttctttctgtattttcagtaaatatttgctttattttatggccacta 44431090  T
Q  599 tccacaaataagcatagattctctcttagagactctctcctagctgtgctgcttaggaatggatgattgtgctctgtcttctctgctttgattctctctg 698  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44431091 tccacaaataagcatagattctctcttagagactctctcctagccgtgctgcttaggaatggatgattgtgctctgtcttctctgctttgattctctctg 44431190  T

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