View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_42 (Length: 335)
Name: NF16757_low_42
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 15039789 - 15039491
Alignment:
| Q |
15 |
ataatactctactaagaggtctaacagaatatttatgaagcaaacgagaaaaattggttcataaaattctgttagtattttaacatatatttaggagtaa |
114 |
Q |
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| T |
15039789 |
ataatactctactaagaggtctagcagaatatttatgaaccaaaagagaaaaattggttcataaaattctgttagtattttaacatatatttaggagtaa |
15039690 |
T |
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| Q |
115 |
aattctgcgatcataaaaattatgttagaccaaattaaccatatattttaaccgcttactatatcaatttagtctaacattactattgaatttggtccat |
214 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15039689 |
aattctgtgatcattaaaattatgttagaccaaattaaccatatattttaaccgcttactatatcaatttagtctaacattactattgaatttggtccat |
15039590 |
T |
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| Q |
215 |
gattctcacaatgaacgatatgagtaaaatttgaataagtacaacctttttaccttattgtcatgattattattgccttgaactacttcttagtgttaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15039589 |
gattctcacaatgaacgatatgagtaaaatttgaataagtacaacc-ttttaccttattgtcatgattattattgccttgaactacttcttagtgttaac |
15039491 |
T |
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