View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_49 (Length: 319)
Name: NF16757_low_49
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_49 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 15886011 - 15886086
Alignment:
| Q |
244 |
tacattatgacaacatttcaacatacttaatgtttgatatttttagcaaaattaatagatgtgggattgatatttt |
319 |
Q |
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| T |
15886011 |
tacattatgacaacatttcaacatacttaatgtttgatatttttagcaaaattaatagatgtgggattgatatttt |
15886086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 15885944 - 15886012
Alignment:
| Q |
39 |
aatggaacattgatggaaccattacatccaataccaccctctcctcctatttttcattcctccaatcta |
107 |
Q |
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| T |
15885944 |
aatggaacattgatggaaccattacatccaataccaccctctcctcctatttttcattcctccaatcta |
15886012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 19550945 - 19550859
Alignment:
| Q |
233 |
gctcctatacgtacattatgacaacatttcaacatacttaatgtttgatatttttagcaaaattaatagatgtgggattgatatttt |
319 |
Q |
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| T |
19550945 |
gctcttatacatacatgatgacaactttttaatagacttaatgttcgatatttttagcaaaattaatagatgtaggattgatatttt |
19550859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 19551276 - 19551151
Alignment:
| Q |
24 |
aaaagtaatgtaatgaa-tggaacattgatggaac-cattacatccaataccaccctctcctcctatttttcattcctccaatctagtatgtaagcaatg |
121 |
Q |
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| T |
19551276 |
aaaagtaatggaatgaaatagaacat-gatggaactcattccatccaataccaccctctccttctatttttcattccccgaatttggggtgtaagcaatg |
19551178 |
T |
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| Q |
122 |
gaatggaacgcattaataatgtatttc |
148 |
Q |
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| T |
19551177 |
gaatgtaacacaatcttaatgtatttc |
19551151 |
T |
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