View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_5 (Length: 677)

Name: NF16757_low_5
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_5
NF16757_low_5
[»] chr5 (21 HSPs)
chr5 (1-677)||(11345349-11346025)
chr5 (162-579)||(11310837-11311259)
chr5 (597-677)||(27673708-27673788)
chr5 (591-677)||(43094631-43094718)
chr5 (617-677)||(7762299-7762359)
chr5 (594-650)||(31787486-31787542)
chr5 (597-674)||(43093945-43094023)
chr5 (597-677)||(30705074-30705154)
chr5 (617-677)||(35777070-35777131)
chr5 (597-677)||(14718-14798)
chr5 (597-654)||(2532023-2532080)
chr5 (617-677)||(7757282-7757343)
chr5 (597-677)||(31788166-31788247)
chr5 (597-638)||(42912972-42913013)
chr5 (592-640)||(8537147-8537195)
chr5 (621-677)||(28886449-28886505)
chr5 (592-673)||(42537133-42537215)
chr5 (617-650)||(2532584-2532617)
chr5 (597-650)||(13568158-13568211)
chr5 (595-670)||(1397412-1397488)
chr5 (594-673)||(34122458-34122538)
[»] chr2 (18 HSPs)
chr2 (597-677)||(23346718-23346798)
chr2 (597-677)||(23347383-23347463)
chr2 (597-677)||(3943247-3943327)
chr2 (592-677)||(28419340-28419425)
chr2 (617-677)||(7190006-7190066)
chr2 (597-677)||(39377638-39377719)
chr2 (617-677)||(43870176-43870237)
chr2 (597-673)||(1149409-1149486)
chr2 (593-673)||(45479853-45479934)
chr2 (597-677)||(20937835-20937915)
chr2 (626-677)||(3940904-3940955)
chr2 (617-654)||(17688243-17688280)
chr2 (617-677)||(17688813-17688874)
chr2 (617-677)||(28137814-28137875)
chr2 (597-677)||(39378369-39378450)
chr2 (594-673)||(2917617-2917697)
chr2 (609-673)||(20951105-20951169)
chr2 (619-651)||(28138367-28138399)
[»] chr1 (25 HSPs)
chr1 (597-677)||(94347-94427)
chr1 (597-677)||(46886442-46886523)
chr1 (597-677)||(49426651-49426731)
chr1 (597-677)||(32161347-32161428)
chr1 (597-677)||(44596798-44596879)
chr1 (597-677)||(97978-98058)
chr1 (597-677)||(20114542-20114623)
chr1 (597-677)||(26944416-26944497)
chr1 (597-677)||(18609950-18610030)
chr1 (597-670)||(21144667-21144740)
chr1 (597-677)||(29765584-29765665)
chr1 (597-677)||(46319687-46319768)
chr1 (617-677)||(51271646-51271707)
chr1 (621-677)||(2365196-2365252)
chr1 (594-673)||(35521548-35521628)
chr1 (594-673)||(41804092-41804172)
chr1 (617-652)||(253051-253086)
chr1 (597-674)||(49924793-49924871)
chr1 (597-677)||(253332-253413)
chr1 (597-673)||(471122-471199)
chr1 (617-677)||(32160689-32160750)
chr1 (617-677)||(46320508-46320569)
chr1 (617-673)||(50117872-50117929)
chr1 (594-673)||(19053993-19054073)
chr1 (597-633)||(21699822-21699858)
[»] chr4 (14 HSPs)
chr4 (603-677)||(28081402-28081476)
chr4 (597-677)||(16983459-16983540)
chr4 (597-677)||(16984216-16984297)
chr4 (597-677)||(44674102-44674182)
chr4 (597-677)||(39590623-39590704)
chr4 (597-677)||(51492009-51492089)
chr4 (596-638)||(3183918-3183960)
chr4 (597-638)||(3186158-3186199)
chr4 (597-673)||(50274697-50274774)
chr4 (594-673)||(21472543-21472623)
chr4 (597-673)||(1041872-1041949)
chr4 (597-673)||(37015868-37015945)
chr4 (597-638)||(37880661-37880702)
chr4 (629-673)||(39588061-39588106)
[»] chr6 (12 HSPs)
chr6 (597-677)||(14012430-14012510)
chr6 (605-677)||(3502693-3502765)
chr6 (592-677)||(3501084-3501169)
chr6 (617-677)||(11687947-11688008)
chr6 (629-673)||(2050998-2051043)
chr6 (617-650)||(28362817-28362850)
chr6 (617-677)||(29076378-29076439)
chr6 (617-677)||(29109911-29109972)
chr6 (617-677)||(29111351-29111412)
chr6 (597-673)||(31768690-31768767)
chr6 (626-677)||(11687425-11687477)
chr6 (597-641)||(28249822-28249866)
[»] chr8 (15 HSPs)
chr8 (597-673)||(545872-545948)
chr8 (320-496)||(30182457-30182633)
chr8 (597-650)||(34234520-34234573)
chr8 (597-677)||(22550920-22551000)
chr8 (597-677)||(34235178-34235258)
chr8 (628-677)||(546476-546525)
chr8 (617-677)||(34366869-34366929)
chr8 (617-677)||(39601661-39601722)
chr8 (597-650)||(43262362-43262415)
chr8 (597-677)||(41250127-41250207)
chr8 (617-650)||(7577671-7577704)
chr8 (597-673)||(18441500-18441577)
chr8 (597-673)||(35389445-35389522)
chr8 (609-673)||(41274574-41274639)
chr8 (597-673)||(45454343-45454420)
[»] chr7 (8 HSPs)
chr7 (597-677)||(46738739-46738820)
chr7 (597-668)||(46740558-46740629)
chr7 (590-677)||(40323686-40323774)
chr7 (597-652)||(36185637-36185692)
chr7 (596-638)||(31513077-31513119)
chr7 (592-673)||(36186531-36186613)
chr7 (610-654)||(34738324-34738368)
chr7 (617-677)||(36185147-36185207)
[»] chr3 (15 HSPs)
chr3 (597-673)||(46989484-46989561)
chr3 (597-669)||(46993234-46993307)
chr3 (592-677)||(43476123-43476209)
chr3 (597-638)||(42165101-42165142)
chr3 (594-677)||(55385071-55385155)
chr3 (617-677)||(5138322-5138383)
chr3 (597-677)||(43478885-43478966)
chr3 (597-673)||(50216913-50216990)
chr3 (594-673)||(66835-66915)
chr3 (602-677)||(48246354-48246430)
chr3 (629-677)||(600599-600648)
chr3 (597-673)||(11380378-11380455)
chr3 (617-677)||(33305015-33305076)
chr3 (597-673)||(41137655-41137732)
chr3 (597-673)||(51696574-51696651)
[»] scaffold0494 (1 HSPs)
scaffold0494 (597-677)||(11509-11589)
[»] scaffold1379 (1 HSPs)
scaffold1379 (597-675)||(491-570)
[»] scaffold0038 (1 HSPs)
scaffold0038 (597-641)||(49984-50028)


Alignment Details
Target: chr5 (Bit Score: 600; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 677
Target Start/End: Original strand, 11345349 - 11346025
Alignment:
Q  1 gtagcagggttggttggatgcattcgttaggtggagtttgaaccattaaacaatttttgagagttctatattagaattaatgcctaaacagacatccaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11345349 gtagcagggttggttggatgcattcgttaggtggagtttgaaccattaaacaatttttgagagttctatattagaattaatgcctaaacaaacatccaca 11345448  T
Q  101 aactagtggttatttccatttcttctagtagagtacatgaattataattataatgatgtacataccttgacgttccctgcatccttgatggcctcaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11345449 aactagtggttatttccatttcttctagtagagtacatgaattataattataatgatgtacataccttgacgttccctgcatccttgatggcctcaataa 11345548  T
Q  201 gtttgagttgcaacatcaagttgtgagatcgaaaatgaactccagacatggtgcaaataacaacatcaactagtttcacagcatctaccaaactttgatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11345549 gtttgagttgcaacatcaagttgtgagatcgaaaatgaactccagacatggtgcaaataacaacatcaactagtttcacagcatctaccaaactttgatg 11345648  T
Q  301 attagagaaagaaccttccacaagatgagcacctagtttcttgaatgaaagaagcatttgcactttctcagtttcaagccctatatctggacgttgaagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  11345649 attagagaaagaaccttccacaagatgagcacctagtttcttatatgaaagaagcatttgcaccttctcagtttcaagccctatatctagacgttgaagt 11345748  T
Q  401 acataggtttcatgaccttgttctaaacttgccttcactattctcctcccaatatacccggtaccccccacaactagaaccttactctttcccattattg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11345749 acataggtttcatgaccttgttctaaacttgccttcactattctcctcccaatatacccagtaccccccacaactagaaccttactctttcccattattg 11345848  T
Q  501 attttctctcttgtagcctatagtttaatttatcctcaatatggatatcctctgccaaggctaactatttataacataacatnnnnnnntgtggaaaatt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||    
T  11345849 attttctctcttgtagcctatagtttaatttatcctcaatatggatatcctgtgccaaggctaactatttataacataacataaaaaaatgtggaaaatt 11345948  T
Q  601 gttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||||||  || | ||||||||||||||||||    
T  11345949 gttgtttacgcatttgataaggctgtgccacacaagtaaatgacgtttttgccttttgacagttaactgccgaagtt 11346025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 162 - 579
Target Start/End: Original strand, 11310837 - 11311259
Alignment:
Q  162 ataccttgacgttccctgcatccttgatggcctcaataagtttgagttgcaacatcaagttgtgagatcgaaaatgaactccagacatggtgcaaataac 261  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11310837 ataccttgacattccctgcatccttgatggcttcaataagtttgagttgcaacatcaagttgtgagatcgaaaatgaactccagacatggtgcaaataac 11310936  T
Q  262 aacatcaactagtttcacagcatctaccaaactttgatgattagagaaagaaccttccacaagatgagcacctagtttcttgaatgaaagaagcatttgc 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11310937 aacatcaactagtttcacagcatctaccaaactttgatgattagaaaaagaaccttccacaagatgagcacctagtttcttgaatgaaagaagcatttgc 11311036  T
Q  362 actttctcagtttcaagccctatatctggacgttgaagtacataggtttcatgaccttgttctaaacttgccttcactattctcctcccaatatacccgg 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11311037 actttctcagtttcaagccctatatctggacgttgaagtacataggtttcatgaccttgttctaaacttgccttcactattctcctcccaatatacccag 11311136  T
Q  462 taccccccacaactagaaccttactctttcccattattgattttctctcttgtagcctatagtttaatttatcctcaatatggatatcctct-----gcc 556  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | |     ||     
T  11311137 ttccccccacaactagaaccttactctttcccattattgtttttctctcttgtagcctttagtttaatttatcctcaatatggatatcatgtgtcaagct 11311236  T
Q  557 aaggctaactatttataacataa 579  Q
    |||||||||||||||||||||||    
T  11311237 aaggctaactatttataacataa 11311259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 27673788 - 27673708
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||||| |||||||||||| | | ||||   ||||||| ||||||||||||||||||||    
T  27673788 aattgttgtttacacatttgataaggctatgccacacgagtcatttacgtaaatgctctttggcagttaactgccgaagtt 27673708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 591 - 677
Target Start/End: Complemental strand, 43094718 - 43094631
Alignment:
Q  591 gtggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||||  | | ||| ||||||||||||||||||    
T  43094718 gtggagaattgctgtttacacatttgataaggttatgccacacgagtaaatgacgtttttaccccatcgacagttaactgccgaagtt 43094631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 7762359 - 7762299
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  7762359 ataaggctgtgccacacgagtaattgacgtttttgcccctcggcagttaactgccgaagtt 7762299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 594 - 650
Target Start/End: Original strand, 31787486 - 31787542
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt 650  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  31787486 gaaaattgctgtttacacatttgataaggctgtgccacacgagtaaatgacattttt 31787542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 597 - 674
Target Start/End: Original strand, 43093945 - 43094023
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaa 674  Q
    |||||||||||||| ||||||||||||| || ||||||||||||||||||||||  | ||||  |||||||||||||||    
T  43093945 aattgttgtttacatatttgataaggctgtgtcacacgagtaaatgacgtttttaccccttcaacagttaactgccgaa 43094023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 30705074 - 30705154
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||||||||||| |||||||| |||||||||||| | | ||||   ||| |||| |||||||||||||||||||    
T  30705074 aattgttgtttacacatttcataaggctgtgccacacgagtcatttacgtaaatgcccttcagcagttaactgccgaagtt 30705154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 35777131 - 35777070
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||| | |||||||||||||||||||||||||| |||| |||||||||||| ||||||||    
T  35777131 ataaggttgtgccacacgagtaaatgacgtttttgcctctgcggcagttaactaccgaagtt 35777070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 14798 - 14718
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||| |||||||||||||||||||| | |||||||||||||||| ||     ||  ||||||||||||||||||||||||    
T  14798 aattgctgtttacacatttgataaggttgtgccacacgagtaaattactcaaatgtccttcggcagttaactgccgaagtt 14718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 654
Target Start/End: Original strand, 2532023 - 2532080
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctc 654  Q
    ||||||||||  ||||||  |||||||| |||||||| ||||||||||||||||||||    
T  2532023 aattgttgttcccacattacataaggctgtgccacacaagtaaatgacgtttttgctc 2532080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 7757282 - 7757343
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||| || |||||||||||||||||||||||||| | | ||| ||||||||||||||||||    
T  7757282 ataagactatgccacacgagtaaatgacgtttttgccccctcgacagttaactgccgaagtt 7757343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 31788247 - 31788166
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgct-cttcggcagttaactgccgaagtt 677  Q
    ||||| ||||||||||||||||||| || ||| | ||||||||||||| ||||| || | ||| |||||||||| |||||||    
T  31788247 aattgctgtttacacatttgataagactgtgctatacgagtaaatgacatttttactccctcgacagttaactgtcgaagtt 31788166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 638
Target Start/End: Complemental strand, 42913013 - 42912972
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagta 638  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  42913013 aattgctgtttacacatttgataaggctgtgccacacgagta 42912972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 640
Target Start/End: Original strand, 8537147 - 8537195
Alignment:
Q  592 tggaaaattgttgtttacacatttgataaggctttgccacacgagtaaa 640  Q
    |||| ||||| | |||||||||||||||||||| |||||||||||||||    
T  8537147 tggagaattgctatttacacatttgataaggctgtgccacacgagtaaa 8537195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 677
Target Start/End: Complemental strand, 28886505 - 28886449
Alignment:
Q  621 ggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||| ||||||||||||||||||| ||  ||| |||||||| |||||||||||||||    
T  28886505 ggctgtgccacacgagtaaatgaccttaatgcccttcggcaattaactgccgaagtt 28886449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 673
Target Start/End: Original strand, 42537133 - 42537215
Alignment:
Q  592 tggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    |||| |||||||||| |||||||||||||||||  |  |||||||||||  || |||||| | | ||||||||||||||||||    
T  42537133 tggagaattgttgttcacacatttgataaggctgagaaacacgagtaaaatacatttttgccccatcggcagttaactgccga 42537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 650
Target Start/End: Complemental strand, 2532617 - 2532584
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgttttt 650  Q
    |||||||| |||||||||||||||||||||||||    
T  2532617 ataaggctgtgccacacgagtaaatgacgttttt 2532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 650
Target Start/End: Complemental strand, 13568211 - 13568158
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt 650  Q
    ||||||||||  ||||||  |||||||| ||||| |||||||||||||||||||    
T  13568211 aattgttgttcccacattacataaggctgtgccatacgagtaaatgacgttttt 13568158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 670
Target Start/End: Complemental strand, 1397488 - 1397412
Alignment:
Q  595 aaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgc 670  Q
    ||||||||||||  |||||||||||||| | || ||||||||||| | || |||||| | | |||||||||||||||    
T  1397488 aaaattgttgttcccacatttgataaggttgtggcacacgagtaatttacatttttgccccctcggcagttaactgc 1397412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 673
Target Start/End: Original strand, 34122458 - 34122538
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctc-ttcggcagttaactgccga 673  Q
    |||||||||||||  || ||||||||||| | |||||||  ||||||  ||| |||||| | |||||||||||||||||||    
T  34122458 gaaaattgttgttcccatatttgataaggttgtgccacattagtaaaatacgattttgccccttcggcagttaactgccga 34122538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 23346718 - 23346798
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23346718 aattgttgtttacacatttgataaggttgtgccacacgagtaaatgacgtttttgcccttcggcagttaactgccgaagtt 23346798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 23347463 - 23347383
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23347463 aattgctgtttacacatttgataaggctgtgccacacgagtaaatgacgtttttgcccttcggcagttaactgccgaagtt 23347383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 3943327 - 3943247
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3943327 aattgttgttcccacattagataaggctatgccacacgagtaaatgacgtttttgctcctcggcagttaactgccgaagtt 3943247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 677
Target Start/End: Original strand, 28419340 - 28419425
Alignment:
Q  592 tggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||  | || |   ||| ||||||||||||||||||||||||    
T  28419340 tggagaattgctgtttacacatttgataaggctgtgccacacgagtattttacctaaatgcccttcggcagttaactgccgaagtt 28419425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 7190066 - 7190006
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||| | |||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  7190066 ataaggttgtgccacacgagtaaattacgtttttgcccctcggcagttaactgccgaagtt 7190006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 39377638 - 39377719
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||| ||||| ||||||  |||||||| |||||||||||||||||||||||||| |||| ||| ||||||||  |||||||    
T  39377638 aattgctgtttccacattacataaggctgtgccacacgagtaaatgacgtttttgcctctgcggtagttaactatcgaagtt 39377719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 43870237 - 43870176
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||| | |||||||||||||||||||||||||| | | ||||||||||||||||||||||    
T  43870237 ataaggttgtgccacacgagtaaatgacgtttttgccccatcggcagttaactgccgaagtt 43870176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 1149409 - 1149486
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgct-cttcggcagttaactgccga 673  Q
    ||||||||||  |||||||||||||| | |||||||| ||||||  ||| ||||||| | ||||||||||||||||||    
T  1149409 aattgttgttcccacatttgataaggttgtgccacactagtaaaatacgattttgctccctcggcagttaactgccga 1149486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 673
Target Start/End: Complemental strand, 45479934 - 45479853
Alignment:
Q  593 ggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctct-tcggcagttaactgccga 673  Q
    |||||||||||||| |||||||| ||||||||  |  ||| |||||||  ||| ||||||||| ||||||||||||||||||    
T  45479934 ggaaaattgttgttgacacatttcataaggctcagaaacatgagtaaaatacgattttgctctctcggcagttaactgccga 45479853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 20937835 - 20937915
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  |||||||| |  |||| |||||||||||||||| || |   ||| ||||||||||||||||||||||||    
T  20937835 aattgttgttcccacatttggtttggctgtgccacacgagtaaattacctaaatgcccttcggcagttaactgccgaagtt 20937915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 677
Target Start/End: Original strand, 3940904 - 3940955
Alignment:
Q  626 tgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||| |||||| |||||||||||||  ||||||||||||||||| ||||||    
T  3940904 tgccatacgagtgaatgacgtttttgtccttcggcagttaactgctgaagtt 3940955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 654
Target Start/End: Original strand, 17688243 - 17688280
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctc 654  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  17688243 ataaggctgtgccacacgaataaatgacgtttttgctc 17688280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 17688874 - 17688813
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||||| ||||||||| |||||||||||||||| | || ||| |||||||| ||||||||    
T  17688874 ataaggctatgccacacgtgtaaatgacgtttttgcccctgcggtagttaactaccgaagtt 17688813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 28137814 - 28137875
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctctt-cggcagttaactgccgaagtt 677  Q
    |||||| | ||||||||||||||||||||||||||| ||| | |||||||||| | ||||||    
T  28137814 ataaggttgtgccacacgagtaaatgacgtttttgcccttacagcagttaactactgaagtt 28137875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 39378450 - 39378369
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  ||| |||  |||||||||||||||||||||||||| || | ||| |||||||| ||||||||    
T  39378450 aattgttgttcccacattacatatggccgtgccacacgagtaaatgacgtttttgcctttgcggtagttaactaccgaagtt 39378369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 673
Target Start/End: Original strand, 2917617 - 2917697
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||||| |||||||| ||||||||  | ||||  ||||||  ||||||||| | | ||||||||||||||||||    
T  2917617 gaaaattgttgttgacacatttcataaggctgaggcacaaaagtaaaatacgtttttgccccctcggcagttaactgccga 2917697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 609 - 673
Target Start/End: Complemental strand, 20951169 - 20951105
Alignment:
Q  609 cacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccga 673  Q
    ||||| |||||||||| |||||||| ||||||| || |   ||| ||||||||||||||||||||    
T  20951169 cacatgtgataaggctgtgccacaccagtaaattacctaaatgcccttcggcagttaactgccga 20951105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 651
Target Start/End: Complemental strand, 28138399 - 28138367
Alignment:
Q  619 aaggctttgccacacgagtaaatgacgtttttg 651  Q
    |||||| ||||||||||||||||||||||||||    
T  28138399 aaggctatgccacacgagtaaatgacgtttttg 28138367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 94347 - 94427
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  94347 aattgttgtttacacatttgataaggctgtgccacatgagtaaatgacgtttttgcccttcggcagttaactgccgaagtt 94427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 46886523 - 46886442
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||| | ||| |||||||||||||||||||||| | | ||||||||||||||||||||||    
T  46886523 aattgttgtttacacatttgataaggttgtgctacacgagtaaatgacgtttttgccccctcggcagttaactgccgaagtt 46886442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 49426651 - 49426731
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||| |||||||||||||||||||||| | ||||||||||||||||||| ||| | |||||||||||||| |||||||||    
T  49426651 aattgctgtttacacatttgataaggctgtaccacacgagtaaatgacgtgttttcccttcggcagttaaccgccgaagtt 49426731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 32161428 - 32161347
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||||| |||||||||||||||||||||||||| | || |||||||||||| ||||||||    
T  32161428 aattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctgcggcagttaactaccgaagtt 32161347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 44596798 - 44596879
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctc-ttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  ||||| || ||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  44596798 aattgttgttcccacattacataagactgtgccacacgagtaaatgacgtttttgcccgctcggcagttaactgccgaagtt 44596879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 98058 - 97978
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||||| |||||||||||||  | || |   ||||||||  ||||||||||||||||||    
T  98058 aattgttgtttacacatttgataaggctgtgccacacgagtattttacctaaatgctcttcaacagttaactgccgaagtt 97978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 20114542 - 20114623
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||||| |||||||||||||||||||||||||| | || ||| |||||||| ||||||||    
T  20114542 aattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctgcggtagttaactaccgaagtt 20114623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 26944416 - 26944497
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||||| |||||||||||||||||||||||||| | || ||||||||||||  |||||||    
T  26944416 aattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctacggcagttaactatcgaagtt 26944497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 18610030 - 18609950
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||||| || ||||||| ||  | || |  |||| ||| ||||||||||||||||||||    
T  18610030 aattgttgtttacacatttgataaggctgtgtcacacgaatattttacctaattgccctttggcagttaactgccgaagtt 18609950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 21144740 - 21144667
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgc 670  Q
    ||||||||||  |||||||||||||| | || ||||||| ||| | |||||||||||  |||||||||||||||    
T  21144740 aattgttgttcccacatttgataaggttctggcacacgactaatttacgtttttgcttctcggcagttaactgc 21144667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 29765665 - 29765584
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||| | | |||||||| ||||||||||||||| | | ||||||||||||||||||||||    
T  29765665 aattgttgttcccacattgcataaggttgtaccacacgaataaatgacgtttttgtcccctcggcagttaactgccgaagtt 29765584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 46319687 - 46319768
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgct-cttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  ||| |||| |||||||||||||||||||||||||| | || ||| |||||||| ||||||||    
T  46319687 aattgttgttcccacattacatatggctgtgccacacgagtaaatgacgtttttgttcctgcggtagttaactaccgaagtt 46319768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 51271707 - 51271646
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||| | ||||||||| |||||||||||||||| | | ||||||||||||||||||||||    
T  51271707 ataaggttgtgccacacgggtaaatgacgtttttgccccctcggcagttaactgccgaagtt 51271646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 621 - 677
Target Start/End: Original strand, 2365196 - 2365252
Alignment:
Q  621 ggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||| ||||||||||||||||||| |   ||| ||||||||||||||||||||||||    
T  2365196 ggctgtgccacacgagtaaatgacctaaatgcccttcggcagttaactgccgaagtt 2365252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 673
Target Start/End: Original strand, 35521548 - 35521628
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctct-tcggcagttaactgccga 673  Q
    ||||||||||||| |||||||| ||||||||  | ||||| ||||||  ||| |||||| || ||||||||||||||||||    
T  35521548 gaaaattgttgttgacacattttataaggctgaggcacacaagtaaaatacgattttgccctctcggcagttaactgccga 35521628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 673
Target Start/End: Complemental strand, 41804172 - 41804092
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||||| |||||||| ||||||||  | ||||| ||||||  ||| ||||| | ||||||||||||||||||||    
T  41804172 gaaaattgttgttgacacattttataaggctgaggcacacaagtaaaatacgcttttgccccttcggcagttaactgccga 41804092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 652
Target Start/End: Original strand, 253051 - 253086
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgc 652  Q
    |||||||| |||||||||||||||||||||||||||    
T  253051 ataaggctgtgccacacgagtaaatgacgtttttgc 253086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 674
Target Start/End: Original strand, 49924793 - 49924871
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaa 674  Q
    |||||||||| |||||||  ||||||||  | ||||||||||| | ||||||||| | |||||||| ||||||||||||    
T  49924793 aattgttgttgacacattgcataaggctgaggcacacgagtaatttacgtttttgccccttcggcaattaactgccgaa 49924871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 253413 - 253332
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||   ||||||| ||||||||||||||||||| |||||| | || ||| |||||||| ||||||||    
T  253413 aattgttgttcccacattacgtaaggctgtgccacacgagtaaatgacatttttgcccctgcggtagttaactaccgaagtt 253332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Complemental strand, 471199 - 471122
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||  ||||||  |||||| | |||||| || |||||||||||||||| | | ||||||||||||||||||    
T  471199 aattgttgttcccacattacataaggttgtgccacgcgggtaaatgacgtttttgccccatcggcagttaactgccga 471122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 32160689 - 32160750
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    |||||||| ||||||||||||||||| |||||||  | || |||||||||||| ||||||||    
T  32160689 ataaggctgtgccacacgagtaaatgtcgtttttacccctgcggcagttaactaccgaagtt 32160750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 46320569 - 46320508
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||| | |||||||||||||||||||||||||| | || ||| |||||||| ||||||||    
T  46320569 ataaggttgtgccacacgagtaaatgacgtttttgcccctgcggtagttaactaccgaagtt 46320508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 673
Target Start/End: Complemental strand, 50117929 - 50117872
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    |||||| | ||||||||||||||||||| ||||||  || ||||||||||||||||||    
T  50117929 ataaggttgtgccacacgagtaaatgacatttttgtttcctcggcagttaactgccga 50117872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 673
Target Start/End: Original strand, 19053993 - 19054073
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||||| |||||||| ||||||||  |  |||||||||||  ||||||||| | | ||| ||||||||||||||    
T  19053993 gaaaattgttgttgacacatttcataaggctgagaaacacgagtaaaatacgtttttgccccctcgacagttaactgccga 19054073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 633
Target Start/End: Original strand, 21699822 - 21699858
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacac 633  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  21699822 aattgttgtttacacatatgataaggctgtgccacac 21699858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 603 - 677
Target Start/End: Original strand, 28081402 - 28081476
Alignment:
Q  603 tgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  28081402 tgtttacacatttgataaggctgtaccacacgagtaaatggcgtttttgcccttcggcagttaactgccgaagtt 28081476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 16983459 - 16983540
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  | | ||||||||||||||||||||||    
T  16983459 aattgttgtttacacatttgataaggctgtgccacacgagtaaatgacgtttttaccccctcggcagttaactgccgaagtt 16983540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 16984297 - 16984216
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||  | | ||||||||||||||||||||||    
T  16984297 aattgctgtttacacatttgataaggctgtgccacacgagtaaatgacgtttttaccccctcggcagttaactgccgaagtt 16984216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 44674102 - 44674182
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||| | ||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  44674102 aattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgccccttggcagttaactgccgaagtt 44674182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 39590704 - 39590623
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||| ||||| ||||||  |||||||| |||||||||||||||||| ||||||| | | ||||||||||||||||||||||    
T  39590704 aattgctgtttccacattatataaggctgtgccacacgagtaaatgatgtttttgccccctcggcagttaactgccgaagtt 39590623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 51492009 - 51492089
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||| | ||||||||||||||||||||||||||||  |||||| ||||||| |||||||    
T  51492009 aattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgcttctcggcaattaactgtcgaagtt 51492089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 638
Target Start/End: Original strand, 3183918 - 3183960
Alignment:
Q  596 aaattgttgtttacacatttgataaggctttgccacacgagta 638  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  3183918 aaattgttgcttacacatttgataaggctgtgccacacgagta 3183960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 638
Target Start/End: Complemental strand, 3186199 - 3186158
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagta 638  Q
    ||||| |||||||||||||||||||||| |||||||||||||    
T  3186199 aattgctgtttacacatttgataaggctgtgccacacgagta 3186158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 50274697 - 50274774
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||  ||||||||||| |||| || ||||||||||| | ||||||||| | | ||||||||||||||||||    
T  50274697 aattgttgttcccacatttgatagggctgtggcacacgagtaatttacgtttttgccccctcggcagttaactgccga 50274774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 673
Target Start/End: Complemental strand, 21472623 - 21472543
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||||| |||||||| ||||||||  |  |||||||||||  ||||||||| | | ||||||||||||||||||    
T  21472623 gaaaattgttgttgacacatttcataaggctgagaaacacgagtaaaatacgtttttgccgcctcggcagttaactgccga 21472543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 1041872 - 1041949
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctc-ttcggcagttaactgccga 673  Q
    ||||||||||  |||||||||||||||| ||  |||||||||| | || ||||||| |  ||||||||||||||||||    
T  1041872 aattgttgttcccacatttgataaggctgtggtacacgagtaatttacttttttgcccgatcggcagttaactgccga 1041949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 37015868 - 37015945
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||  ||||||  |||||| | ||||||| ||||||||||| |||||| | | ||||||||||||||||||    
T  37015868 aattgttgttcccacattacataaggatgtgccacatgagtaaatgacatttttgccccctcggcagttaactgccga 37015945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 638
Target Start/End: Complemental strand, 37880702 - 37880661
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagta 638  Q
    ||||||||||||||||||  |||||||| |||||||||||||    
T  37880702 aattgttgtttacacattacataaggctgtgccacacgagta 37880661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 673
Target Start/End: Original strand, 39588061 - 39588106
Alignment:
Q  629 cacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||    
T  39588061 cacacgagtaaatgacgtttttgccccctcggcagttaactgccga 39588106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 14012510 - 14012430
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  14012510 aattgttgttcccacatttaataaggctgtgccacacgagtaaatgacgtttttgcccttcagcagttaactgccgaagtt 14012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 605 - 677
Target Start/End: Complemental strand, 3502765 - 3502693
Alignment:
Q  605 tttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||| |||||| | || ||||||||||||||||||||||||||||| ||| ||||| |||||||||    
T  3502765 tttacacatttcataaggttgtgtcacacgagtaaatgacgtttttgctcttcagcaattaacggccgaagtt 3502693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 677
Target Start/End: Original strand, 3501084 - 3501169
Alignment:
Q  592 tggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||  | ||||   ||| |||||||||||||||| |||||||    
T  3501084 tggagaattgctgtttacacatttgataaggctctgccacacgagtattttacgtaaatgcccttcggcagttaactgtcgaagtt 3501169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 11688008 - 11687947
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    |||||||| |||||||||||||||||||||||||  | || |||||||||||| ||||||||    
T  11688008 ataaggctgtgccacacgagtaaatgacgtttttacccctgcggcagttaactaccgaagtt 11687947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 673
Target Start/End: Original strand, 2050998 - 2051043
Alignment:
Q  629 cacacgagtaaatgacgtttttgctc-ttcggcagttaactgccga 673  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||    
T  2050998 cacacgagtaaaatacgtttttgctccttcggcagttaactgccga 2051043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 650
Target Start/End: Complemental strand, 28362850 - 28362817
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgttttt 650  Q
    |||||||| |||||||||||||||||||||||||    
T  28362850 ataaggctgtgccacacgagtaaatgacgttttt 28362817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 29076439 - 29076378
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctc-ttcggcagttaactgccgaagtt 677  Q
    |||||||| || ||||| ||||| |||||||||||| | ||||||||||||||| |||||||    
T  29076439 ataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaactgtcgaagtt 29076378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 29109972 - 29109911
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctc-ttcggcagttaactgccgaagtt 677  Q
    |||||||| || ||||| ||||| |||||||||||| | ||||||||||||||| |||||||    
T  29109972 ataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaactgtcgaagtt 29109911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 29111412 - 29111351
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctc-ttcggcagttaactgccgaagtt 677  Q
    |||||||| || ||||| ||||| |||||||||||| | ||||||||||||||| |||||||    
T  29111412 ataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaactgtcgaagtt 29111351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 31768690 - 31768767
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||  |||||||||||||||| ||  |||||||||| | || |||||| | | ||||||||||||||||||    
T  31768690 aattgttgttcccacatttgataaggctgtgtaacacgagtaatttacttttttgccccctcggcagttaactgccga 31768767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 626 - 677
Target Start/End: Original strand, 11687425 - 11687477
Alignment:
Q  626 tgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||  | || |||||||||||| ||||||||    
T  11687425 tgccacacgagtaaatgacgtttttacccctgcggcagttaactaccgaagtt 11687477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 641
Target Start/End: Original strand, 28249822 - 28249866
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaat 641  Q
    |||||||||||||||||||| |  |||| ||||||||||||||||    
T  28249822 aattgttgtttacacatttggtttggctgtgccacacgagtaaat 28249866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 545872 - 545948
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccga 673  Q
    |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||  ||||| ||||||||||||||    
T  545872 aattgttgtttacacatttgataaggctgtgccacatgtgtaaatgacgtttttgtccttcgacagttaactgccga 545948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 320 - 496
Target Start/End: Original strand, 30182457 - 30182633
Alignment:
Q  320 acaagatgagcacctagtttcttgaatgaaagaagcatttgcactttctcagtttcaagccctatatctggacgttgaagtacataggtttcatgacctt 419  Q
    |||| |||||||||| ||||||||||||| |||||  |||| |  |||||| ||| ||| || |  ||||| | |||||  |||||||||||||| ||||    
T  30182457 acaatatgagcaccttgtttcttgaatgatagaagtctttgaagcttctcaatttgaagtcccaactctggcctttgaatcacataggtttcatgtcctt 30182556  T
Q  420 gttctaaacttgccttcactattctcctcccaatatacccggtaccccccacaactagaaccttactctttcccatt 496  Q
    ||||||||||||||||||||||||| || || || || || || || ||||| |||| |||||| |||||| |||||    
T  30182557 gttctaaacttgccttcactattcttcttcctatgtatcctgttcctcccactactaaaaccttgctcttttccatt 30182633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 597 - 650
Target Start/End: Original strand, 34234520 - 34234573
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt 650  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34234520 aattgttgtttacacatttgataaggctgtgccacacgagtaaatgacgttttt 34234573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 22551000 - 22550920
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||||||| |||||||||||||| | || |   ||| ||||||||||||||||||||||||    
T  22551000 aattgttgtttacacatttgataaggctgtgccacacgagtaatttacctaaatgcccttcggcagttaactgccgaagtt 22550920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 34235258 - 34235178
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    ||||| |||||||||||||||||||||| || || |||||||||||||||||||  ||  ||||||||||||||||||||||    
T  34235258 aattgctgtttacacatttgataaggctgtg-catacgagtaaatgacgtttttacctactcggcagttaactgccgaagtt 34235178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 628 - 677
Target Start/End: Complemental strand, 546525 - 546476
Alignment:
Q  628 ccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  546525 ccacacgagtaaatgacgtttttgcccttcgacaattaactgccgaagtt 546476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 34366869 - 34366929
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||||| ||||||||||||||| ||| ||||||| | ||| ||||||||||||||||||    
T  34366869 ataaggctgtgccacacgagtaaaagacctttttgcccctcgtcagttaactgccgaagtt 34366929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 39601661 - 39601722
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgttttt-gctcttcggcagttaactgccgaagtt 677  Q
    |||||||| |||||||||||||||||||||||||  ||  ||| ||||||||||||||||||    
T  39601661 ataaggctgtgccacacgagtaaatgacgtttttaccttctcgacagttaactgccgaagtt 39601722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 650
Target Start/End: Original strand, 43262362 - 43262415
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgttttt 650  Q
    ||||||||||  ||||||  |||||||| |||||||||||||||||||||||||    
T  43262362 aattgttgttctcacattacataaggctgtgccacacgagtaaatgacgttttt 43262415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 41250207 - 41250127
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||| | || ||||||||||| |||||||||||| | |||| ||||||||| |||||||    
T  41250207 aattgttgttcccacattgcataaggttgtggcacacgagtaattgacgtttttgcccctcggtagttaactgtcgaagtt 41250127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 650
Target Start/End: Complemental strand, 7577704 - 7577671
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgttttt 650  Q
    |||||||| |||||||||||||||||||||||||    
T  7577704 ataaggctgtgccacacgagtaaatgacgttttt 7577671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Complemental strand, 18441577 - 18441500
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctct-tcggcagttaactgccga 673  Q
    |||||||||| |||||||| ||||||||  | ||||| ||||||  |||||||||| |  ||||||||||||||||||    
T  18441577 aattgttgttgacacatttcataaggctgagacacacaagtaaaatacgtttttgccccctcggcagttaactgccga 18441500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 35389445 - 35389522
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgc-tcttcggcagttaactgccga 673  Q
    |||||||||| |||||||  ||||||||  | || |||||||| | |||||||||| |||||| ||||||||||||||    
T  35389445 aattgttgttgacacattgcataaggctgagacatacgagtaatttacgtttttgcctcttcgacagttaactgccga 35389522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 673
Target Start/End: Original strand, 41274574 - 41274639
Alignment:
Q  609 cacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    |||||||||||||||| || ||||||||||| | || |||||| | ||||||||||||| ||||||    
T  41274574 cacatttgataaggctgtggcacacgagtaatttacttttttgccccttcggcagttaattgccga 41274639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 45454343 - 45454420
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||  ||||||||||||| || || ||||| ||||||  ||| ||||| ||| ||||||||||||||||||    
T  45454343 aattgttgttcccacatttgataagactgtggcacactagtaaaatacgattttgcctcctcggcagttaactgccga 45454420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 677
Target Start/End: Original strand, 46738739 - 46738820
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctct-tcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||| | ||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  46738739 aattgttgttcccacattacataaggttgtgccacacgagcaaatgacgtttttgccctctcggcagttaactgccgaagtt 46738820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 668
Target Start/End: Complemental strand, 46740629 - 46740558
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaact 668  Q
    ||||||||||  |||||||||||||||| || |||| ||||||||||||||||||  ||||| |||||||||    
T  46740629 aattgttgttcccacatttgataaggctgtgacacaagagtaaatgacgtttttgtccttcgacagttaact 46740558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 677
Target Start/End: Complemental strand, 40323774 - 40323686
Alignment:
Q  590 tgtggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||| ||||| ||||  ||||||  |||||||| |||||||| ||||||||||||||||| | || |||||||||||| ||||||||    
T  40323774 tgtggagaattgctgttcccacattacataaggctgtgccacacaagtaaatgacgtttttgcccctgcggcagttaactaccgaagtt 40323686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 597 - 652
Target Start/End: Complemental strand, 36185692 - 36185637
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgc 652  Q
    ||||| ||||| ||||||  |||||||| |||||||||||||||||||||||||||    
T  36185692 aattgctgtttccacattacataaggctgtgccacacgagtaaatgacgtttttgc 36185637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 638
Target Start/End: Complemental strand, 31513119 - 31513077
Alignment:
Q  596 aaattgttgtttacacatttgataaggctttgccacacgagta 638  Q
    ||||||||||||||||||||||||||| | ||||| |||||||    
T  31513119 aaattgttgtttacacatttgataaggttgtgccatacgagta 31513077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 592 - 673
Target Start/End: Complemental strand, 36186613 - 36186531
Alignment:
Q  592 tggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||||||| |||||||  |||||||| || ||||||||||||  ||| ||||| | | ||||||||||| ||||||    
T  36186613 tggaaaattgttgttgacacattgcataaggctgtgtcacacgagtaaaatacgcttttgccccctcggcagttaaatgccga 36186531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 654
Target Start/End: Original strand, 34738324 - 34738368
Alignment:
Q  610 acatttgataaggctttgccacacgagtaaatgacgtttttgctc 654  Q
    ||||||||||||||| || ||||||||||| | ||||||||||||    
T  34738324 acatttgataaggctgtggcacacgagtaatttacgtttttgctc 34738368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Original strand, 36185147 - 36185207
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    |||||| | ||||||||||||||||||  ||||| | || |||||||||||| ||||||||    
T  36185147 ataaggttgtgccacacgagtaaatgatatttttaccctgcggcagttaactaccgaagtt 36185207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 46989484 - 46989561
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctct-tcggcagttaactgccga 673  Q
    ||||||||||||||||||| |||||| | || || ||||||||||||||||||||| || ||||||||||||| ||||    
T  46989484 aattgttgtttacacatttaataaggttgtgtcatacgagtaaatgacgtttttgccctctcggcagttaactaccga 46989561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 669
Target Start/End: Complemental strand, 46993307 - 46993234
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactg 669  Q
    ||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||| | | ||||||||||||||    
T  46993307 aattgctgttcacacatttgataaggctgtgccatacgagtaaatgacgtttttgccccctcggcagttaactg 46993234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 677
Target Start/End: Original strand, 43476123 - 43476209
Alignment:
Q  592 tggaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||| ||||||||||  ||||||  |||||| | |||||||||||||||||||||||||| | | |||| |||||||||||||||||    
T  43476123 tggagaattgttgttctcacattacataaggttgtgccacacgagtaaatgacgtttttgccccctcggaagttaactgccgaagtt 43476209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 597 - 638
Target Start/End: Original strand, 42165101 - 42165142
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagta 638  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  42165101 aattgttgtttacacatttgataaggctgtgccacacgagta 42165142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 677
Target Start/End: Original strand, 55385071 - 55385155
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||  ||||||  |||||| | || ||||||||||| ||||||||||| | | ||||||||||||||||||||||    
T  55385071 gaaaattgttgttcccacattgcataaggttgtggcacacgagtaattgacgtttttgccccctcggcagttaactgccgaagtt 55385155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 5138383 - 5138322
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||||| |||||||||||||||||||||||||| | || || ||||||||| ||||||||    
T  5138383 ataaggctgtgccacacgagtaaatgacgtttttgcccctacgacagttaactaccgaagtt 5138322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 43478966 - 43478885
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  ||||||  |||||| | |||||||||||||||||| ||||||| | | ||||||||||||||| ||||||    
T  43478966 aattgttgttcccacattacataaggttgtgccacacgagtaaatgatgtttttgtcccctcggcagttaactgctgaagtt 43478885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 673
Target Start/End: Complemental strand, 50216990 - 50216913
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||  |||||||||||||| | || ||||||||||| ||||||||||| | | | ||||||||||||||||    
T  50216990 aattgttgttcccacatttgataaggttgtggcacacgagtaattgacgtttttgccccattggcagttaactgccga 50216913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 673
Target Start/End: Original strand, 66835 - 66915
Alignment:
Q  594 gaaaattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||| ||||||| |||||||||||||||||  | ||||||||||||  ||| ||||| | | ||||||||||||||||||    
T  66835 gaaaactgttgttgacacatttgataaggctgagacacacgagtaaaatacgcttttgccccctcggcagttaactgccga 66915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 677
Target Start/End: Original strand, 48246354 - 48246430
Alignment:
Q  602 ttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||||||||||||||||||||  | || ||||||||||||  |||||| | | ||||||||||||||| ||||||    
T  48246354 ttgtttacacatttgataaggctgagtcatacgagtaaatgatatttttgccccctcggcagttaactgctgaagtt 48246430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 629 - 677
Target Start/End: Complemental strand, 600648 - 600599
Alignment:
Q  629 cacacgagtaaatgacgtttttgc-tcttcggcagttaactgccgaagtt 677  Q
    ||||||||||||||||||||||||  | ||| ||||||||||||||||||    
T  600648 cacacgagtaaatgacgtttttgcgccctcgacagttaactgccgaagtt 600599  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 11380378 - 11380455
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    |||||||||| ||||||||| | |||||  |  |||||||||||  ||||||||| | ||||||||||||||||||||    
T  11380378 aattgttgttgacacatttggttaggctgagaaacacgagtaaaatacgtttttgccccttcggcagttaactgccga 11380455  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 677
Target Start/End: Complemental strand, 33305076 - 33305015
Alignment:
Q  617 ataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccgaagtt 677  Q
    |||||| | ||||| |||||||||||||||||||| | || |||||||||||| ||||||||    
T  33305076 ataaggttgtgccatacgagtaaatgacgtttttgtccctgcggcagttaactaccgaagtt 33305015  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Original strand, 41137655 - 41137732
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgct-cttcggcagttaactgccga 673  Q
    ||||||||||  |||||||||||||| | |||||||| ||||||  | ||||||||| | || |||||||||||||||    
T  41137655 aattgttgttcccacatttgataaggttgtgccacactagtaaaatatgtttttgctccatcagcagttaactgccga 41137732  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 673
Target Start/End: Complemental strand, 51696651 - 51696574
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttg-ctcttcggcagttaactgccga 673  Q
    ||||||||||  |||||||||||||||| || ||||||||||| | || |||||| | | |||| |||||||||||||    
T  51696651 aattgttgttgccacatttgataaggctgtggcacacgagtaatttacttttttgccccctcggtagttaactgccga 51696574  T

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Target: scaffold0494 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 677
Target Start/End: Complemental strand, 11589 - 11509
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgctcttcggcagttaactgccgaagtt 677  Q
    ||||||||||  |||||||| |  |||| |||||||||||||||| || |   ||| ||||||||||||||||||||||||    
T  11589 aattgttgttcccacatttggtttggctgtgccacacgagtaaattacctaaatgcccttcggcagttaactgccgaagtt 11509  T

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Target: scaffold1379 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 675
Target Start/End: Complemental strand, 570 - 491
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaatgacgtttttgct-cttcggcagttaactgccgaag 675  Q
    ||||| ||||||||||||||||||| ||  |  |||||||||||  ||| ||||||| | ||||||||||||||||||||    
T  570 aattgatgtttacacatttgataagactgagaaacacgagtaaaatacgattttgctccctcggcagttaactgccgaag 491  T

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Target: scaffold0038 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 641
Target Start/End: Original strand, 49984 - 50028
Alignment:
Q  597 aattgttgtttacacatttgataaggctttgccacacgagtaaat 641  Q
    |||||||||||||||||||| |  |||| ||||||||||||||||    
T  49984 aattgttgtttacacatttggtttggctgtgccacacgagtaaat 50028  T

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