View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_51 (Length: 312)
Name: NF16757_low_51
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 31944454 - 31944275
Alignment:
| Q |
18 |
aatccaaaaaatctccggttattcccgttgaagaagaactggtttctcttcttccttccagaagaaagaaagcgaagcaatcgtccgtcaattccgatga |
117 |
Q |
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| T |
31944454 |
aatccaaaatatctccggttattcccgttgaagaagaactggtttctcttcttccttccagaagaaagaaagcgaagcaatcgtcggtcaattccgatga |
31944355 |
T |
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| Q |
118 |
cgcatgcttcatcggagaacctattccggccaatgaagctcaaaagaaatggcctcaccgatacaccaagaacgagtgag |
197 |
Q |
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| T |
31944354 |
tgcatgcttcatcggagaacctattccggccgatgaagctcaaaagaaatggcctcaccgatacaccaagaacgagtgag |
31944275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 31944246 - 31944160
Alignment:
| Q |
226 |
tgtgttattgcaagatttgaaaattaatattatatgattgtgttttgtagtgaatcgagtgatgatgaaagtttgaaggcgaagttt |
312 |
Q |
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| T |
31944246 |
tgtgttattgcaagatttgaaaattaatgttatatgattgtgttttgtagtgaatcgagtgatgatgaaagtttcaaggcgaagttt |
31944160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 9394949 - 9394767
Alignment:
| Q |
18 |
aatccaaaaaatctccggttattcccgttgaagaagaact---ggtttctcttcttccttccagaagaaagaaagcgaagcaatcgtccgtcaattccga |
114 |
Q |
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| T |
9394949 |
aatccaaaaaatctccggttaatcccgtcgaagaagaactacaggtttcgcttcttccttctagaagaaagaaagcgaagcaatcttcggttaactccga |
9394850 |
T |
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| Q |
115 |
tgacgcatgcttcatcggagaacctattccggccaatgaagctcaaaagaaatggcctcaccgatacaccaagaacgagtgag |
197 |
Q |
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| T |
9394849 |
cgatgcatgtttcgtcggagaacctattccggctgatgaagctcaaaagaaatggcctcaccgatacaccaagaacgagtgag |
9394767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 9394734 - 9394648
Alignment:
| Q |
226 |
tgtgttattgcaagatttgaaaattaatattatatgattgtgttttgtagtgaatcgagtgatgatgaaagtttgaaggcgaagttt |
312 |
Q |
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| T |
9394734 |
tgtgttattgcaagatttgaaatttactgctatatgattgtgttttgtagtgaatcgagtgaggatgaaagtttgaaggcaaagttt |
9394648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 197
Target Start/End: Complemental strand, 1342477 - 1342324
Alignment:
| Q |
44 |
gttgaagaagaactggtttctcttcttccttccagaagaaagaaagcgaagcaatcgtccgtcaattccgatgacgcatgcttcatcggagaacctattc |
143 |
Q |
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| T |
1342477 |
gttgaagaagaactggtttcgcttcttccttctagaagaaagaaatcgaagcaatcttcggttaactccgatgatgcatgtttcgtcggagaacctattc |
1342378 |
T |
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| Q |
144 |
cggccaatgaagctcaaaagaaatggcctcaccgatacaccaagaacgagtgag |
197 |
Q |
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| T |
1342377 |
cggctgatgaagcacaaaagaaatggcctcaccggtacaccaagaacgagtgag |
1342324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 1342243 - 1342189
Alignment:
| Q |
258 |
tatgattgtgttttgtagtgaatcgagtgatgatgaaagtttgaaggcgaagttt |
312 |
Q |
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| T |
1342243 |
tatgattgtgttttgtagtgaattgagtgagggtgaaagtttgaaggcgaagttt |
1342189 |
T |
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