View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_55 (Length: 303)
Name: NF16757_low_55
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 38850908 - 38851180
Alignment:
| Q |
19 |
cctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38850908 |
cctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagga |
38851007 |
T |
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| Q |
119 |
atatttggatttaagaactcagagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatatttcca |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38851008 |
atatttggatttaagaactcggagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatatttcca |
38851107 |
T |
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| Q |
219 |
caaagcgtgaatccatttgatctacttcgttatcaaattctatcttttcttcggacatttcttcgaataccta |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38851108 |
caaagcgtgaatccatttgatctacttcgttatcaaattctatcttttcttcggacatttcttcgaataccta |
38851180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 38316437 - 38316187
Alignment:
| Q |
19 |
cctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagca |
118 |
Q |
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||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||| ||||| ||||| || ||||||||| | ||||||||| || |
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| T |
38316437 |
cctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaataacatttgtcggaggtataaca |
38316338 |
T |
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| Q |
119 |
atatttggatttaagaactcagagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatatttcca |
218 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
38316337 |
gcatttggatttaagaactcagtgtacttcctcattacctcgagctccaaaaaattaaagggcaaatcatgtgcaaggatcatagaagcgcatatacccg |
38316238 |
T |
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| Q |
219 |
caaagcgtgaatccatttgatctacttcgttatcaaattctatcttttctt |
269 |
Q |
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|||| |||| ||| |||| ||||| |||||||||||||| || ||||||| |
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| T |
38316237 |
caaattgtgattccctttgttctacctcgttatcaaattccatattttctt |
38316187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 38325282 - 38325090
Alignment:
| Q |
19 |
cctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagca |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| | || ||||| || ||||||||| ||||||||||| || |
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| T |
38325282 |
cctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaataacatttgtaggaggtataaca |
38325183 |
T |
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| Q |
119 |
atatttggatttaagaactcagagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacat |
211 |
Q |
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|||| ||||||| ||||| |||| |||||||||||||| |||| ||||||| |||||| |||||| ||||||||||| ||||||||||| |
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| T |
38325182 |
gcatttcgatttaaagtctcagtgtacctcctcattccctcgtgctccaaaaaatcaaagggtaaatcaagtgcaaggatcatagaagcacat |
38325090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 38305709 - 38305515
Alignment:
| Q |
19 |
cctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagca |
118 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||||||||| |||| |||| || || ||||| || ||||||| | |||||| | | || |
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| T |
38305709 |
cctattaggaatggtagccaattcttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaataacatctacaggaggcaaaaca |
38305610 |
T |
|
| Q |
119 |
atatttggatttaagaactcagagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcacatat |
213 |
Q |
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|||||||||||||||| || | | |||||||| |||||| |||| ||||| | |||||| ||||||| || ||||||| ||||||||||||| |
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| T |
38305609 |
atatttggatttaagaccttcatgaagttcctcatcccctcgcgctcaaaaaactcaaagggaaaatcatttgaaaggatcatagaagcacatat |
38305515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 38320535 - 38320344
Alignment:
| Q |
19 |
cctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagca |
118 |
Q |
| |
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||||||||||||||||| || | ||||||||||| ||||| ||||||||||||||| || || ||||| | ||||||||| ||||||| ||| || |
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| T |
38320535 |
cctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaataacatttataggaggcataaca |
38320436 |
T |
|
| Q |
119 |
atatttggatttaagaactcagagtacttcctcattccctcgagctcgaaaaaatgaaagggcaaatcatgtgcaaggatcgtagaagcaca |
210 |
Q |
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|||||||||||||| || | | || ||||| |||||| |||| ||||||| |||||| ||||||| || ||||||| |||||||||| |
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| T |
38320435 |
gcatttggatttaagaccttcatgaagttactcataccctcgcgctcaaaaaaatcaaagggaaaatcatttgaaaggatcatagaagcaca |
38320344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 38313022 - 38312910
Alignment:
| Q |
21 |
tattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcgataacatttctaggaggtatagcaat |
120 |
Q |
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||||||||||||||| |||| ||| |||||||| |||||| ||||||||||||| || || ||||| || | ||||||| |||||| ||| ||| |
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| T |
38313022 |
tattaggaatggtagccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcctcaagaacatttgaaggaggcataacaac |
38312923 |
T |
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| Q |
121 |
atttggatttaag |
133 |
Q |
| |
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||||||||||||| |
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| T |
38312922 |
atttggatttaag |
38312910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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