View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_56 (Length: 287)
Name: NF16757_low_56
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_56 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 18438452 - 18438176
Alignment:
| Q |
12 |
ttcttaaaagtagcatatcacacaaccttatcttgcaactctaaaatgttttattttgaaatgattttcattaatgcaaacaaacacatgcttttgtttt |
111 |
Q |
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| T |
18438452 |
ttcttaaaagtagcatatcacacaaccttatcatgcaactctaaaatgttttattttgaaatgattttcattaatgcaaacaaacacatgcttttgtttt |
18438353 |
T |
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| Q |
112 |
tcttaaaaaattctaaagtaatgtcattttatataacttgtaatagataatcataaaattcatttta-ggtaatatgttgttagtactctataggtatca |
210 |
Q |
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| T |
18438352 |
tcttaaaaaattctaaagtaatgtcattttatataacttgtaatagataatcataaaattcattttagggtaatatgttgttagtactctataggtatca |
18438253 |
T |
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| Q |
211 |
attaacaagccatgtatgtagttttgcannnnnnnnacacgatatgtgaatttttaaggtgtgaaaatatactttaa |
287 |
Q |
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| T |
18438252 |
attaactagccatgtatgtagttttgcattttttttacacgatatgtgaatttttaaggtgtgaaaatatactttaa |
18438176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 18442730 - 18442453
Alignment:
| Q |
12 |
ttcttaaaagtagcatatcacacaaccttatcttgcaactctaaaatgttttattttgaaatgattttcattaatgcaaacaaacacatgcttttgtttt |
111 |
Q |
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| T |
18442730 |
ttcttaatagtagcatatcacacaaccttatcatgcaactctaaaatgttttattttgaaatgattttcattaatgcaaacaaacacatgcttttgtttt |
18442631 |
T |
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| Q |
112 |
tcttaaaaaattctaaagtaatgtcattttatataacttgtaatagataatcataaaattcatttta-ggtaatatgttgttagtactctataggtatca |
210 |
Q |
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| T |
18442630 |
tcttaaaaaattctaaagtaatgtcattttatataacttgtaatagataatcataaaattcattttagggtaatatgttgttagtactctataggtatca |
18442531 |
T |
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| Q |
211 |
attaacaagccatgtatgtagttttgca-nnnnnnnnacacgatatgtgaatttttaaggtgtgaaaatatactttaa |
287 |
Q |
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| T |
18442530 |
attaactagccatgtatgtagttttgcatttttctttacacgatatgtgaatttttaaggtgtgaaaataaactttaa |
18442453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 18434179 - 18433897
Alignment:
| Q |
12 |
ttcttaaaagtagcatatcacacaaccttatcttgcaac--tctaaaatgttttattttgaaatgattttcattaatgcaaacaaacacatgcttttgtt |
109 |
Q |
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| T |
18434179 |
ttcttaaaagtagcacatcacacaaccttatcatgcaacactctaaaatgttttattttgaaatgattttcattaatgcaaacaaacacatgcttttg-t |
18434081 |
T |
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| Q |
110 |
tttcttaaaaaattctaaagtaatgtcattttatataacttgtaatagataatcataaaattcattttagg-taatatgttgttagtactctataggtat |
208 |
Q |
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| T |
18434080 |
tttcttaaaatattctaaagtaatgtaattttatacaatttgtaatagataaccataaaattcattttaggataatatgttgttagtactctataggtat |
18433981 |
T |
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| Q |
209 |
caattaacaagccatgtatgtagttttgca-----nnnnnnnnacacgatatgtgaatttttaaggtgtgaaaatatactttaa |
287 |
Q |
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| T |
18433980 |
caattaactagccatgtatgtagttttgcatatatatttttttacacgatatgtggatttttaaggtgtgaaaatattctttaa |
18433897 |
T |
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