View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_6 (Length: 664)
Name: NF16757_low_6
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 33446773 - 33446358
Alignment:
| Q |
8 |
ctgaaatgaaaagacaaatgagtaggtatat--cgaaaacctctggattaaatattcggtaactaccctcgagccaggagcaagacttgttttaatccat |
105 |
Q |
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| T |
33446773 |
ctgaaatgaaaagacaaatgagtaggtatatatcgaaaacctctggattaaatattcggtaactactcttgagccaggagcaagacttgttttaatccat |
33446674 |
T |
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| Q |
106 |
ggcttgacctgatataaaatcacatggaaacaacatatcaaaatgattgatgttatagttagactatctagccaatcggaatcgaaggtttg--tccaat |
203 |
Q |
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| T |
33446673 |
cgcttgacctgatataaaatcacatggaaacaacatatcaaaatgattgatattatagttagactatctagccaatcggaatcgaaggtttgcatccaaa |
33446574 |
T |
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| Q |
204 |
tttcattttgattttacatgtatgtgttgagagttgagactaacctccaaatctagttcacaggctttctttgcgacaagaccagcactaagcattgcac |
303 |
Q |
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| T |
33446573 |
tttcattttga-------------------gatttcagactaacctccaaacctagttcacaggctttctttgcgacaagaccagcactaagcattgcac |
33446493 |
T |
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| Q |
304 |
tagggtttgatgtattagtacaacttgtaatggctgcgatgacaatacttccatgcttaaggttagcatgatgtccttggaaagaaaacttcacctcttt |
403 |
Q |
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| T |
33446492 |
tagggtttgatgtattagtacaacttgtaatggctgcgatgacaatacttccatgcttaaggttagcatgatgtccttggaaagaaaacttcacctcttt |
33446393 |
T |
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| Q |
404 |
atccttttctccttttgatatcccaaatccctgct |
438 |
Q |
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| T |
33446392 |
atccttttctccttttgatatcccatatccctgct |
33446358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 497 - 664
Target Start/End: Complemental strand, 33446299 - 33446132
Alignment:
| Q |
497 |
cagcacggtagcacattataagctccagtccaggtcaccttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaa |
596 |
Q |
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| T |
33446299 |
cagcacgatagcacattataagctccagtccaggtcaccttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaa |
33446200 |
T |
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| Q |
597 |
ctcgatcatgaggcctttcagaaagtattgaagtgtaacgagacaagaaagagacagtacaataatat |
664 |
Q |
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| T |
33446199 |
ctcgatcatgaggcctttcagaaagtatagaagtgtaacaagataagaaagagacagtacaataatat |
33446132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 541 - 606
Target Start/End: Original strand, 17040913 - 17040978
Alignment:
| Q |
541 |
tccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcgatcatg |
606 |
Q |
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| T |
17040913 |
tccaactttgttatcaagacaagcatgccagtcagccttcatttctttcaaaggcactcggtcatg |
17040978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 17039443 - 17039483
Alignment:
| Q |
76 |
gagccaggagcaagacttgttttaatccatggcttgacctg |
116 |
Q |
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| T |
17039443 |
gagcctggagcaagacttgttttaacccaaggcttgacctg |
17039483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 609
Target Start/End: Original strand, 28306927 - 28307003
Alignment:
| Q |
533 |
accttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcgatcatgagg |
609 |
Q |
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| T |
28306927 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccgatcatgagg |
28307003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 609
Target Start/End: Complemental strand, 37235184 - 37235108
Alignment:
| Q |
533 |
accttgattccaactttgttttcaagacaagcatgccaatctgccttcatgtctttcaaaggaactcgatcatgagg |
609 |
Q |
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| T |
37235184 |
accttgaatcccactttgttatcaagacaagaatgccaatcggacttcatttctttcaaaggcacccgatcatgagg |
37235108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 28306150 - 28306211
Alignment:
| Q |
270 |
ttctttgcgacaagaccagcactaagcattgcactagggtttgatgtattagtacaacttgt |
331 |
Q |
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| T |
28306150 |
ttctttgcaacaagaccagctccaagcataacacttgggtttgatgtatttgtacaacttgt |
28306211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 37235961 - 37235900
Alignment:
| Q |
270 |
ttctttgcgacaagaccagcactaagcattgcactagggtttgatgtattagtacaacttgt |
331 |
Q |
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| T |
37235961 |
ttctttgcaacaagaccagctccaagcataacacttgggtttgatgtatttgtacaacttgt |
37235900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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