View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_60 (Length: 271)
Name: NF16757_low_60
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 12144228 - 12143983
Alignment:
| Q |
11 |
caaaggaagaaaacagccaaataatagtgaacaagaatgcaaatggtgggccagaaggaagaccaaagagagcaatcaaattgcccaacagactcatgga |
110 |
Q |
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| T |
12144228 |
caaaggaagaaaacatccaaataatagtgaacaagaatgcaaatggtgggccagaaggaagaccaaagagagaaattaaattgcccaacagactcatgga |
12144129 |
T |
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| Q |
111 |
ctaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagctgtcacaagttgccactctctactgttagaaccttaaaagggataagaat |
210 |
Q |
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| T |
12144128 |
ctaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagctgtcacaagttgtcactctctaccgttagaaccttaaaagggataagaat |
12144029 |
T |
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| Q |
211 |
aaaagtatttagaatttatc-ttttattttcttgtattgtgatgag |
255 |
Q |
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| T |
12144028 |
aaaagtatttagaatttatctttttattttcttgtattgtgatgag |
12143983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 12547097 - 12546852
Alignment:
| Q |
11 |
caaaggaagaaaacagccaaataatagtgaacaagaatgcaaatggtgggccagaaggaagaccaaagagagcaatcaaattgcccaacagactcatgga |
110 |
Q |
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| T |
12547097 |
caaaggaagaaaacatccaaataatagtgaacaagaatgcaaatggtgggccagaaggaagaccaaagagagaaattaaattgcccaacagactcatgga |
12546998 |
T |
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| Q |
111 |
ctaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagctgtcacaagttgccactctctactgttagaaccttaaaagggataagaat |
210 |
Q |
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| T |
12546997 |
ctaggaatagtctctagaagcatcctaagaagaggacaaatttcaatagctgtcacaagttgtcactctctaccgttagaaccttaaaagggataagaat |
12546898 |
T |
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| Q |
211 |
aaaagtatttagaatttatc-ttttattttcttgtattgtgatgag |
255 |
Q |
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| T |
12546897 |
aaaagtatttagaatttatctttttattttcttgtattgtgatgag |
12546852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 12143929 - 12143859
Alignment:
| Q |
186 |
ttagaaccttaaaagggataagaataaaagtatttagaatttatc-ttttattttcttgtattgtgatgag |
255 |
Q |
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| T |
12143929 |
ttagaaccttaaaagggataagaataaaagtatttagaatttatctttttattttcttgtattgtgatgag |
12143859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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