View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_78 (Length: 234)

Name: NF16757_low_78
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_78
NF16757_low_78
[»] chr5 (21 HSPs)
chr5 (1-221)||(2177473-2177693)
chr5 (3-75)||(31009099-31009171)
chr5 (1-72)||(35943812-35943883)
chr5 (5-70)||(2740387-2740452)
chr5 (1-74)||(15409528-15409601)
chr5 (1-70)||(33149560-33149629)
chr5 (1-73)||(6679807-6679879)
chr5 (1-65)||(13811761-13811825)
chr5 (4-70)||(35785311-35785377)
chr5 (3-76)||(3921181-3921254)
chr5 (1-70)||(14831923-14831992)
chr5 (1-70)||(18520806-18520875)
chr5 (3-76)||(26720627-26720700)
chr5 (3-76)||(26990376-26990449)
chr5 (3-75)||(2252085-2252157)
chr5 (1-52)||(36732882-36732933)
chr5 (4-75)||(39688814-39688885)
chr5 (1-75)||(20073433-20073507)
chr5 (3-73)||(33825243-33825313)
chr5 (1-70)||(40145516-40145585)
chr5 (4-72)||(9603925-9603993)
[»] chr7 (31 HSPs)
chr7 (1-70)||(4999436-4999505)
chr7 (1-74)||(46033719-46033792)
chr7 (8-75)||(21234517-21234584)
chr7 (1-48)||(35137642-35137689)
chr7 (1-75)||(31735986-31736060)
chr7 (1-70)||(19329951-19330020)
chr7 (1-70)||(38837326-38837395)
chr7 (1-74)||(41423791-41423864)
chr7 (4-76)||(35522988-35523060)
chr7 (3-70)||(36362125-36362192)
chr7 (3-65)||(19436114-19436176)
chr7 (1-51)||(32951434-32951484)
chr7 (9-75)||(46374741-46374807)
chr7 (1-70)||(8080305-8080374)
chr7 (3-76)||(8238324-8238397)
chr7 (1-74)||(35468773-35468846)
chr7 (6-73)||(16374743-16374810)
chr7 (3-74)||(22343472-22343543)
chr7 (1-76)||(27744225-27744300)
chr7 (3-70)||(36361847-36361914)
chr7 (3-74)||(38044308-38044379)
chr7 (4-51)||(40957819-40957866)
chr7 (3-76)||(32564342-32564415)
chr7 (3-72)||(41915852-41915921)
chr7 (6-70)||(3434666-3434730)
chr7 (1-52)||(3784104-3784155)
chr7 (1-44)||(38267149-38267192)
chr7 (1-72)||(39255844-39255915)
chr7 (4-70)||(11044290-11044356)
chr7 (3-72)||(7728017-7728086)
chr7 (3-76)||(40846029-40846102)
[»] chr6 (18 HSPs)
chr6 (1-74)||(31976357-31976430)
chr6 (1-70)||(11427727-11427796)
chr6 (1-70)||(17598663-17598732)
chr6 (3-76)||(31952946-31953019)
chr6 (3-74)||(4231659-4231730)
chr6 (3-70)||(29857938-29858005)
chr6 (1-70)||(32869787-32869856)
chr6 (1-53)||(23128066-23128118)
chr6 (3-75)||(30341277-30341349)
chr6 (3-74)||(15989960-15990031)
chr6 (1-52)||(22880598-22880649)
chr6 (1-59)||(946485-946543)
chr6 (3-76)||(15507940-15508013)
chr6 (29-74)||(22421997-22422042)
chr6 (1-52)||(15832686-15832737)
chr6 (3-74)||(31110679-31110750)
chr6 (1-35)||(6209422-6209456)
chr6 (3-72)||(28536408-28536477)
[»] chr4 (25 HSPs)
chr4 (1-70)||(6034153-6034222)
chr4 (4-76)||(31910304-31910376)
chr4 (1-76)||(29239995-29240070)
chr4 (1-72)||(40574888-40574959)
chr4 (4-74)||(41823994-41824064)
chr4 (3-76)||(19670632-19670705)
chr4 (1-70)||(41236456-41236525)
chr4 (1-70)||(42044289-42044358)
chr4 (3-76)||(47986319-47986391)
chr4 (1-70)||(48182971-48183040)
chr4 (3-75)||(29547876-29547948)
chr4 (3-74)||(50813810-50813881)
chr4 (3-74)||(55475302-55475373)
chr4 (1-75)||(50052345-50052419)
chr4 (3-75)||(44536663-44536735)
chr4 (1-75)||(50526088-50526162)
chr4 (3-76)||(17983659-17983732)
chr4 (3-76)||(18924411-18924484)
chr4 (1-70)||(24995029-24995098)
chr4 (7-75)||(32767073-32767141)
chr4 (1-44)||(480395-480438)
chr4 (1-52)||(54473473-54473524)
chr4 (35-76)||(3481787-3481828)
chr4 (3-76)||(29589656-29589729)
chr4 (1-73)||(48647645-48647717)
[»] chr1 (22 HSPs)
chr1 (1-70)||(9474798-9474867)
chr1 (3-76)||(5958916-5958989)
chr1 (1-74)||(32813356-32813429)
chr1 (1-70)||(41758914-41758983)
chr1 (1-52)||(50630567-50630618)
chr1 (1-70)||(27564657-27564726)
chr1 (1-70)||(37649307-37649376)
chr1 (3-76)||(45044476-45044549)
chr1 (1-70)||(48716204-48716273)
chr1 (1-52)||(38632261-38632312)
chr1 (1-72)||(49811447-49811518)
chr1 (3-76)||(47748553-47748626)
chr1 (1-76)||(11152294-11152369)
chr1 (3-70)||(26274540-26274607)
chr1 (3-74)||(41608411-41608482)
chr1 (3-74)||(50590918-50590989)
chr1 (1-70)||(47452242-47452311)
chr1 (1-74)||(51898601-51898674)
chr1 (1-52)||(2582024-2582075)
chr1 (3-74)||(37926356-37926427)
chr1 (3-74)||(44332289-44332360)
chr1 (3-72)||(34339968-34340036)
[»] chr3 (30 HSPs)
chr3 (4-76)||(20764831-20764903)
chr3 (4-76)||(30801649-30801721)
chr3 (3-76)||(35536737-35536810)
chr3 (1-75)||(8076502-8076576)
chr3 (3-70)||(11095289-11095356)
chr3 (1-76)||(51419276-51419351)
chr3 (3-77)||(45058468-45058542)
chr3 (4-70)||(54868817-54868883)
chr3 (1-74)||(11347840-11347913)
chr3 (1-70)||(33644309-33644378)
chr3 (29-74)||(35965700-35965745)
chr3 (3-76)||(42823222-42823295)
chr3 (1-70)||(53982120-53982189)
chr3 (6-70)||(48587023-48587087)
chr3 (4-44)||(52629412-52629452)
chr3 (3-74)||(8956873-8956944)
chr3 (1-76)||(47531974-47532049)
chr3 (4-70)||(17470517-17470583)
chr3 (1-70)||(36707350-36707419)
chr3 (6-74)||(35093699-35093767)
chr3 (1-52)||(9563108-9563159)
chr3 (3-74)||(14623757-14623828)
chr3 (9-76)||(26141446-26141513)
chr3 (1-52)||(31456798-31456849)
chr3 (3-74)||(36331247-36331318)
chr3 (1-76)||(41189680-41189755)
chr3 (5-75)||(33118767-33118837)
chr3 (3-52)||(27714843-27714892)
chr3 (1-70)||(49607523-49607592)
chr3 (1-45)||(1758404-1758447)
[»] chr2 (27 HSPs)
chr2 (1-72)||(41758696-41758767)
chr2 (1-74)||(20700924-20700997)
chr2 (1-73)||(44152036-44152108)
chr2 (1-70)||(10249304-10249373)
chr2 (1-70)||(19930742-19930811)
chr2 (1-70)||(32505570-32505639)
chr2 (4-60)||(33436032-33436088)
chr2 (3-74)||(43490232-43490303)
chr2 (4-70)||(40701590-40701656)
chr2 (1-70)||(13438452-13438521)
chr2 (1-70)||(17473129-17473198)
chr2 (1-70)||(28863564-28863633)
chr2 (1-74)||(36168945-36169018)
chr2 (3-76)||(38732465-38732538)
chr2 (3-75)||(13365464-13365536)
chr2 (1-52)||(9058589-9058640)
chr2 (9-52)||(27864808-27864851)
chr2 (1-75)||(2533232-2533306)
chr2 (4-70)||(7465657-7465723)
chr2 (1-75)||(40613819-40613893)
chr2 (3-76)||(2997403-2997476)
chr2 (4-53)||(4060797-4060846)
chr2 (4-52)||(38882751-38882799)
chr2 (3-75)||(45097652-45097724)
chr2 (3-70)||(5574422-5574489)
chr2 (37-76)||(33436346-33436385)
chr2 (4-44)||(30915575-30915615)
[»] scaffold0110 (1 HSPs)
scaffold0110 (4-77)||(8778-8851)
[»] chr8 (26 HSPs)
chr8 (1-74)||(4854781-4854854)
chr8 (1-70)||(12831156-12831225)
chr8 (3-76)||(42354504-42354577)
chr8 (4-70)||(504043-504109)
chr8 (4-74)||(10284549-10284619)
chr8 (1-75)||(15048098-15048172)
chr8 (1-75)||(43414498-43414572)
chr8 (1-74)||(8841350-8841423)
chr8 (1-70)||(23122519-23122588)
chr8 (1-70)||(34012218-34012287)
chr8 (1-73)||(5957939-5958011)
chr8 (4-52)||(44507027-44507075)
chr8 (3-74)||(32707921-32707992)
chr8 (1-71)||(40423864-40423934)
chr8 (1-70)||(14548031-14548100)
chr8 (1-70)||(42710216-42710285)
chr8 (3-71)||(16056322-16056390)
chr8 (1-52)||(9122294-9122345)
chr8 (3-70)||(24307715-24307782)
chr8 (3-74)||(32032835-32032906)
chr8 (37-75)||(20074869-20074907)
chr8 (1-70)||(15197442-15197511)
chr8 (1-74)||(37038588-37038661)
chr8 (1-52)||(1179880-1179931)
chr8 (3-70)||(30479396-30479463)
chr8 (3-70)||(34307327-34307394)
[»] scaffold0237 (1 HSPs)
scaffold0237 (3-70)||(4140-4207)
[»] scaffold0018 (1 HSPs)
scaffold0018 (3-73)||(152609-152679)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-73)||(848-920)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-73)||(848-920)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-44)||(10057-10100)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2177473 - 2177693
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttccttgccgatgttagtcaagcttaagct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2177473 tcctcttctctcttcctagtgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttccttgccgatgttagtcaagcttaagct 2177572  T
Q  101 attattgatggtcacattacatggtccgtccccccattgtcctattacaagaaaacttgagtcaattttgtctacttatatattcatggaatatcgctag 200  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2177573 attattgatggtcacattgcatggtccctccccccattgtcctattacaagaaaacttgagtcaattttgtctgcttatatattcatggaatatcgctag 2177672  T
Q  201 aagtgtaacatgtatgtatct 221  Q
    |||||| ||||||||||||||    
T  2177673 aagtgtcacatgtatgtatct 2177693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 31009099 - 31009171
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||| ||||| || ||||||| ||||||||||||||||  |||||| ||||||||||||||    
T  31009099 ctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtctatgtaacattttcct 31009171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35943883 - 35943812
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    ||||||| |||||||||| ||||| || ||||||||||||||||  |||||||||||||| |||||||||||    
T  35943883 tcctcttttctcttcctagtgcatggggtgtacaagggtgtatggaaataaaatgtgtctatgtaacatttt 35943812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 2740387 - 2740452
Alignment:
Q  5 cttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||  |||||| |||| ||||    
T  2740387 cttctctcttcctaatgcatgggatgtacaagggtgtatgggaataaagggtgtctatgtatcatt 2740452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15409601 - 15409528
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||||| || || |||||||||||||||| |||||||  |||| | |||||||||||||    
T  15409601 tcctcttctctcttcctaatgtatggggtgtacaagggtgtatgcgaataaagggtgtttatgtaacattttcc 15409528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33149629 - 33149560
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||||  |||||| |||| ||||    
T  33149629 tcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcatt 33149560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6679807 - 6679879
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    ||||||||||||||||||||| || || ||||||||||||||||| ||||||   ||||| ||||||||||||    
T  6679807 tcctcttctctcttcctaatgtatagggtgtacaagggtgtatgacaataaatgatgtctatgtaacattttc 6679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13811761 - 13811825
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgta 65  Q
    |||||||||||||||||||||||| |||||||||||| |||||| |||||||  |||||| ||||    
T  13811761 tcctcttctctcttcctaatgcatgggatgtacaaggatgtatgggaataaatggtgtctatgta 13811825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 35785311 - 35785377
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||| || ||||||||||||||||  ||||||| |||||| |||| ||||    
T  35785311 tcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 35785377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 3921254 - 3921181
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||||||  || || ||||||||||||||||  | ||||| |||||| |||||||||||||||    
T  3921254 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcctt 3921181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14831923 - 14831992
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||| |||||| |||||||  |||||| |||| ||||    
T  14831923 tcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 14831992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18520875 - 18520806
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||||||  | ||||||||||||||||| ||||||  |||||| |||| ||||    
T  18520875 tcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgaaaataaagggtgtctatgtatcatt 18520806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 26720627 - 26720700
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||||||| || || ||||| ||||||||||||||||||   ||||| | |||||||||||||    
T  26720627 ctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctatataacattttcctt 26720700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 26990376 - 26990449
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||||||| || || ||||| ||||||||||||||||||   ||||| | |||||||||||||    
T  26990376 ctcttctctcttcctaatgtatggggtgtactagggtgtatgagaataaatgatgtctatataacattttcctt 26990449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 2252157 - 2252085
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||||||||||||  || || ||||||||||||||||  | ||||| |||||| ||||||||||||||    
T  2252157 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcct 2252085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 36732933 - 36732882
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    ||||||||||||||||||||||||  | |||||||||||||||| |||||||    
T  36732933 tcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaa 36732882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 39688885 - 39688814
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||||||||||| ||| || ||||||| ||||||||  | ||||| |||||| ||||||||||||||    
T  39688885 tcttctctcttcctaatacatagggtgtacaaaggtgtatgcaattaaaaggtgtctatgtaacattttcct 39688814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20073507 - 20073433
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| | |||  ||| ||||| |||||||||||||||||  ||||| | ||||||||||||    
T  20073507 tcctcttctctcttcctagttcatgagatttacaaaggtgtatgagaataaaaaatgtctatctaacattttcct 20073433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 33825313 - 33825243
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    |||||||||||||||| ||||| || |||| |||| ||||||||||||||  |||||  ||||||||||||    
T  33825313 ctcttctctcttcctagtgcatggggtgtagaaggctgtatgagaataaatggtgtcaatgtaacattttc 33825243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40145516 - 40145585
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||   | ||||||||||| ||||||||||||  |||||| |||| ||||    
T  40145516 tcctcttctctcttcctaatgcacgaggtgtacaagggtatatgagaataaagggtgtctatgtatcatt 40145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 9603925 - 9603993
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    |||||||||||| || ||| | |||||||||| ||||||||||||||||  ||||||  ||||||||||    
T  9603925 tcttctctcttcttagtgcttgggatgtacaaaggtgtatgagaataaatggtgtctacgtaacatttt 9603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 4999505 - 4999436
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||| ||||    
T  4999505 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcatt 4999436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 46033792 - 46033719
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||| ||||||||| || || ||||||||||||||||||||||||  |||||| |||||||||||||    
T  46033792 tcctcttctctattcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 46033719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 21234517 - 21234584
Alignment:
Q  8 ctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||| || || ||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  21234517 ctctcttcctaatgtatggggtgtacaatggtgtatgagaataaaaggtgtctatgtaacattttcct 21234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35137642 - 35137689
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaa 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  35137642 tcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaa 35137689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31735986 - 31736060
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||||||||||||||| || || |||||||||||||||| |||||||| || ||| | ||||||||||||    
T  31735986 tcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaaaggtatctatctaacattttcct 31736060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19329951 - 19330020
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  19329951 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 19330020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38837326 - 38837395
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||||  |||||| |||| ||||    
T  38837326 tcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 38837395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41423791 - 41423864
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||||| || ||||||| ||||||||||||||||  |||| | |||||||||||||    
T  41423791 tcctcttctctcttcctagtgcatggggtgtacaaaggtgtatgagaataaagggtgtttatgtaacattttcc 41423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 35522988 - 35523060
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| || || |||||||||||||||| |||||||  |||| | |||||||||||||||    
T  35522988 tcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtttatgtaacattttcctt 35523060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 36362125 - 36362192
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||| |||||||||||| ||| |||||||||||||||||||||||||||  |||||| |||| ||||    
T  36362125 ctcttttctcttcctaatacatgggatgtacaagggtgtatgagaataaagggtgtctatgtatcatt 36362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 19436176 - 19436114
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgta 65  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||  |||||| ||||    
T  19436176 ctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgta 19436114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32951484 - 32951434
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataa 51  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||||||    
T  32951484 tcctcttctctcttcctaatacatggggtgtacaagggtgtatgagaataa 32951434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 46374807 - 46374741
Alignment:
Q  9 tctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||||||| || || |||||||||||||||| |||||||  |||||| ||||||||||||||    
T  46374807 tctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttcct 46374741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8080374 - 8080305
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||| ||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  8080374 tcctcttctctcttcctattgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 8080305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 8238324 - 8238397
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| | |||| |||||||||||||||    
T  8238324 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggcgtctatgtaacattttcctt 8238397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35468846 - 35468773
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| | |||  |||||| |||| ||||||||||||||| |||| | |||||||||||||    
T  35468846 tcctcttctctcttcctagttcatgagatgtataaggatgtatgagaataaaaggtgtatatgtaacattttcc 35468773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 16374810 - 16374743
Alignment:
Q  6 ttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    |||||||||||||||| || |  ||||||| ||||||||||||||||  |||||| ||||||||||||    
T  16374810 ttctctcttcctaatgtatggagtgtacaaaggtgtatgagaataaagggtgtctatgtaacattttc 16374743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 22343472 - 22343543
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| |||  | ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  22343472 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 22343543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27744300 - 27744225
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| ||||| |||||||||||| | |||| |||||||  |||| | | |||||||||||||    
T  27744300 tcctcttctctcttcctagtgcatgggatgtacaaggatatatgggaataaatggtgtttatataacattttcctt 27744225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 36361914 - 36361847
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||| |||||||||||| ||| | |||||||||||||||||||||||||  |||||| |||| ||||    
T  36361914 ctcttttctcttcctaatacatggaatgtacaagggtgtatgagaataaagggtgtctatgtatcatt 36361847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 38044308 - 38044379
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||| |||||||||||| ||| || ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  38044308 ctcttttctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 38044379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 40957819 - 40957866
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataa 51  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||||    
T  40957819 tcttctctcttcctaatgcatggggtgtacaagggtgtatgaaaataa 40957866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 32564415 - 32564342
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| |||  | ||||||||||||||||  | |||||| ||||| |||||||| ||||||    
T  32564415 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaatatgtctatgtaacatcttcctt 32564342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 41915852 - 41915921
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    ||||||||||||||||||  || || ||||||||||||||||  | ||||| |||||| |||||||||||    
T  41915852 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatttt 41915921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 3434666 - 3434730
Alignment:
Q  6 ttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||| || ||||||||| |||||| |||||||  |||||| |||| ||||    
T  3434666 ttctctcttcctaatgcatggggtgtacaaggctgtatgggaataaagggtgtctatgtatcatt 3434730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3784104 - 3784155
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||||||| || ||||||||  |||||| |||||||    
T  3784104 tcctcttctctcttcctaatgcatggggtgtacaagaatgtatgtgaataaa 3784155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38267149 - 38267192
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatg 44  Q
    |||||||||||||||||||||||| |||||||| | ||||||||    
T  38267149 tcctcttctctcttcctaatgcatgggatgtacgaaggtgtatg 38267192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39255915 - 39255844
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    ||||||||||||||||   || || | |||||||||||||||||| ||||||  |||||| |||||||||||    
T  39255915 tcctcttctctcttcccggtggatagaatgtacaagggtgtatgataataaagggtgtctatgtaacatttt 39255844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 11044290 - 11044356
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||  | ||||||| ||||||||| ||||||  |||||| |||| ||||    
T  11044290 tcttctctcttcctaatgcatgaggtgtacaaaggtgtatgaaaataaagagtgtctatgtatcatt 11044356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 7728017 - 7728086
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    ||||||||||||||||||  || || ||||||||| ||||||  | ||||| |||||| |||||||||||    
T  7728017 ctcttctctcttcctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacatttt 7728086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 40846102 - 40846029
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||   ||  ||||||||||||||||||  | ||||| || ||| |||||||||||||||    
T  40846102 ctcttctctcttcctaaaagatgagatgtacaagggtgtatgcaattaaaaggtatctatgtaacattttcctt 40846029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 31976357 - 31976430
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||||||  |||||| |||||||||||||    
T  31976357 tcctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 31976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11427727 - 11427796
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  11427727 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 11427796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17598663 - 17598732
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||||||||||  ||||||| |||||| |||| ||||    
T  17598663 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 17598732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 31953019 - 31952946
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||| ||||| || |||| |||| ||||||||||||||  |||||| |||||||||||||||    
T  31953019 ctcttctctcttcctagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcctt 31952946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 4231659 - 4231730
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  4231659 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 4231730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 29857938 - 29858005
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  29857938 ctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 29858005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32869787 - 32869856
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||| |||||| |||||||  |||||| |||| ||||    
T  32869787 tcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 32869856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23128118 - 23128066
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaa 53  Q
    ||||||| |||||||||||||||| |||||||||||||||||||  |||||||    
T  23128118 tcctcttttctcttcctaatgcatgggatgtacaagggtgtatggaaataaaa 23128066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 30341349 - 30341277
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||||||||||||  || || ||||||||||||||||  | ||||| |||||| ||||||||||||||    
T  30341349 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcct 30341277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 15990031 - 15989960
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||  || || ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  15990031 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 15989960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22880649 - 22880598
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||| ||| || |||||||||||||||| |||||||    
T  22880649 tcctcttctctcttcctaatacatggggtgtacaagggtgtatgggaataaa 22880598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 946485 - 946543
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtc 59  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||| ||||||| |||||    
T  946485 tcctcttctctcttcctaatgcatgagatgtacaagaatgtatgacaataaaaagtgtc 946543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 15508013 - 15507940
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||||||  || || ||||||||| ||||||  | ||||| |||||| |||||||||||||||    
T  15508013 ctcttctctcttcctaatatatggggtgtacaaggatgtatgcaattaaaaggtgtctatgtaacattttcctt 15507940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 22422042 - 22421997
Alignment:
Q  29 tgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||    
T  22422042 tgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 22421997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15832686 - 15832737
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    ||||||||| |||||||||||||| || |||||||||||||||  |||||||    
T  15832686 tcctcttctatcttcctaatgcatggggtgtacaagggtgtattggaataaa 15832737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 31110750 - 31110679
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||| || || ||||||| ||||||||  ||||||   ||||| |||||||||||||    
T  31110750 ctcttctctcttcctaatgtatggggtgtacaaaggtgtatggaaataaaggatgtctatgtaacattttcc 31110679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6209456 - 6209422
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaa 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  6209456 tcctcttctctcttcctaatgcatgggatgtacaa 6209422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 28536477 - 28536408
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    |||||| ||||||||| ||||| || ||||||||||||||||| ||||||   ||||  |||||||||||    
T  28536477 ctcttccctcttcctactgcatggggtgtacaagggtgtatgaaaataaatgatgtcgatgtaacatttt 28536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 6034153 - 6034222
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||| ||||    
T  6034153 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaaaggtgtctatgtatcatt 6034222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 31910304 - 31910376
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| || ||||||||||| ||||||| |||||||  |||||| |||||||||||||||    
T  31910304 tcttctctcttcctaatgtatgggatgtacaagagtgtatgggaataaatggtgtctatgtaacattttcctt 31910376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29239995 - 29240070
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| ||||| || |||||||| ||||||| |||||||  |||||| |||||||||||||||    
T  29239995 tcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtctatgtaacattttcctt 29240070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40574888 - 40574959
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    ||||||||||||||||||||  || || ||||||||||||||||||||||||| |||||| | |||||||||    
T  40574888 tcctcttctctcttcctaatatatggggtgtacaagggtgtatgagaataaaaggtgtctatctaacatttt 40574959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 41823994 - 41824064
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||||||  | ||||||| ||||||||||||||||  |||||| |||||||||||||    
T  41823994 tcttctctcttcctaatgcatgaggtgtacaaaggtgtatgagaataaatggtgtctatgtaacattttcc 41824064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 19670705 - 19670632
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| |||||||||||||||    
T  19670705 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcctt 19670632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41236456 - 41236525
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  41236456 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 41236525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42044358 - 42044289
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||||  |||||| |||| ||||    
T  42044358 tcctcttctctcttcctaatgcatgggatgtacaagggtgtatggaaataaagggtgtctatgtatcatt 42044289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 47986319 - 47986391
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| ||| |||||||||||||||||||  ||| ||| |||||| |||||||||||||||    
T  47986319 ctcttctctcttcctaatacatgggatgtacaagggtgtatg-caattaaaggtgtctatgtaacattttcctt 47986391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48183040 - 48182971
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  48183040 tcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 48182971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 29547948 - 29547876
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| ||||||||||||||    
T  29547948 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcct 29547876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 50813881 - 50813810
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| |||  ||||||||||||||||||  | ||||| |||||| |||||||||||||    
T  50813881 ctcttctctcttcctaatacatgagatgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 50813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 55475302 - 55475373
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  55475302 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 55475373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 50052419 - 50052345
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| |||||  | ||||||| |||||||| |||||||  |||||| ||||||||||||||    
T  50052419 tcctcttctctcttcctagtgcataaggtgtacaaaggtgtatgggaataaagggtgtctatgtaacattttcct 50052345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 44536735 - 44536663
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| ||| || ||||||||  ||||||  | |||||||||||| ||||||||||||||    
T  44536735 ctcttctctcttcctaatacatagggtgtacaagaatgtatgcaattaaaatgtgtctatgtaacattttcct 44536663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 50526162 - 50526088
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| ||||| || |||||||||||||||   ||||||  |||| | ||||||||||||||    
T  50526162 tcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcct 50526088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 17983732 - 17983659
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| |||  | ||||||||||||||||  | ||||| |||||| |||||||||| ||||    
T  17983732 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacatttccctt 17983659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 18924484 - 18924411
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| |||  | |||| |||||||||||  | ||||| |||||| |||||||||||||||    
T  18924484 ctcttctctcttcctaatacatgaggtgtaaaagggtgtatgcaattaaaaggtgtctatgtaacattttcctt 18924411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24995098 - 24995029
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||| |||||||| || ||||||| |||||||| |||||||  |||||| |||| ||||    
T  24995098 tcctcttctctcttcttaatgcatggggtgtacaatggtgtatgggaataaagggtgtctatgtatcatt 24995029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 32767073 - 32767141
Alignment:
Q  7 tctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||| ||||| ||| |  ||||||||||||||||  | |||||||||||| ||||||||||||||    
T  32767073 tctctctttctaatacatagagtgtacaagggtgtatgcaattaaaatgtgtctatgtaacattttcct 32767141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 480438 - 480395
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatg 44  Q
    |||||||||||||||||||||||| || ||||||| ||||||||    
T  480438 tcctcttctctcttcctaatgcatggggtgtacaaaggtgtatg 480395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 54473524 - 54473473
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||| ||| |  |||||||||||||||| |||||||    
T  54473524 tcctcttctctcttcctaatacatggagtgtacaagggtgtatgggaataaa 54473473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 3481787 - 3481828
Alignment:
Q  35 agggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||||||  |||||| |||||||||||||||    
T  3481787 agggtgtatgagaataaagggtgtctatgtaacattttcctt 3481828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 29589729 - 29589656
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| |||  | |||||||| |||||||  | ||||| |||||| ||||| |||||||||    
T  29589729 ctcttctctcttcctaatacatgaggtgtacaagagtgtatgcaattaaaaggtgtctatgtaatattttcctt 29589656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48647717 - 48647645
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    |||||||||||||||||| ||||| | |||||||| | ||||| | ||||||   ||||| ||||||||||||    
T  48647717 tcctcttctctcttcctagtgcatagaatgtacaaagatgtataaaaataaatgatgtctatgtaacattttc 48647645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9474867 - 9474798
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| |||| ||||    
T  9474867 tcctcttctctcttcctaatgcatgggatgtacaagggtgtatgagaataaagagtgtctatgtatcatt 9474798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 5958989 - 5958916
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | |||||||||||| |||||||||||||||    
T  5958989 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaatgtgtctatgtaacattttcctt 5958916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32813356 - 32813429
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||||| || || |||||||||||||||| |||||||  |||||| |||||||||||||    
T  32813356 tcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttcc 32813429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41758914 - 41758983
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  41758914 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 41758983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 50630567 - 50630618
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  50630567 tcctcttctctcttcctaatgcatagggtgtacaagggtgtatgagaataaa 50630618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27564726 - 27564657
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  27564726 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 27564657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37649307 - 37649376
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  37649307 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 37649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 45044549 - 45044476
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||||||| || || ||||||||||||||||||||||||   |||||  ||||||||||||||    
T  45044549 ctcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatgatgtctacgtaacattttcctt 45044476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48716273 - 48716204
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  48716273 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 48716204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38632312 - 38632261
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  38632312 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 38632261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49811518 - 49811447
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    ||||||||||||||||||||| ||  | || |||||||||||||||||||||  |||||| |||||||||||    
T  49811518 tcctcttctctcttcctaatgtatgtggtgcacaagggtgtatgagaataaagggtgtctatgtaacatttt 49811447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 47748553 - 47748626
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| ||| || |||||||| |||||||  | ||||| |||||| |||||||||||||||    
T  47748553 ctcttctctcttcctaatacatggggtgtacaagagtgtatgcaattaaaaggtgtctatgtaacattttcctt 47748626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11152369 - 11152294
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||| | ||||| || |||| |||| ||||||||||||||  |||||| | |||||||||||||    
T  11152369 tcctcttctctcttcccagtgcatggggtgtagaaggatgtatgagaataaatggtgtctatataacattttcctt 11152294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 26274540 - 26274607
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||||  |||| ||||||||||||| |||||||  |||||| |||| ||||    
T  26274540 ctcttctctcttcctaatgcatgagatgcacaagggtgtatgggaataaagggtgtctatgtatcatt 26274607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 41608482 - 41608411
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||| | |||||||||||||    
T  41608482 ctcttctctcttcctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtttatgtaacattttcc 41608411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 50590989 - 50590918
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| || ||| |||||||||||||    
T  50590989 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtatctatgtaacattttcc 50590918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 47452311 - 47452242
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||| ||||| || ||||||||| |||||| |||||||  |||||| |||| ||||    
T  47452311 tcctcttctctcttcctattgcatggggtgtacaaggatgtatgggaataaagagtgtctatgtatcatt 47452242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51898674 - 51898601
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||||| || |||||||||||||||   ||||||  |||| | |||||||||||||    
T  51898674 tcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcc 51898601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2582024 - 2582075
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||| |||  | ||||||||||||||| ||||||||    
T  2582024 tcctcttctctcttcctaatacatgaggtgtacaagggtgtattagaataaa 2582075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 37926427 - 37926356
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||| || || ||||||||| |||||| |||||||  |||||| | ||| |||||||    
T  37926427 ctcttctctcttcctaatgtatggggtgtacaaggatgtatgtgaataaatggtgtctatataatattttcc 37926356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 44332360 - 44332289
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| |  ||||||||||||||||  | ||||| || ||| |||||||||||||    
T  44332360 ctcttctctcttcctaatacatagagtgtacaagggtgtatgcaattaaaaggtatctatgtaacattttcc 44332289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 34340036 - 34339968
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    |||||||||||||| | ||||| || |||||||| |||| ||| ||||||| |||||| |||||||||||    
T  34340036 ctcttctctcttccaagtgcatagggtgtacaagagtgt-tgaaaataaaaggtgtctatgtaacatttt 34339968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 20764903 - 20764831
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||  |||||| |||||||||||||||    
T  20764903 tcttctctcttcctaatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcctt 20764831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 30801721 - 30801649
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||| | ||| || ||||||||||||||||||||||||| |||||| |||||||||||||||    
T  30801721 tcttctctcttcctagtacatggggtgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcctt 30801649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 35536737 - 35536810
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||| ||||| || |||| |||||||||||||||||||  |||||| |||||||||||||||    
T  35536737 ctcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcctt 35536810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8076502 - 8076576
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| ||||| || |||||||  |||||||||||||||  |||||| ||||||||||||||    
T  8076502 tcctcttctctcttcctagtgcatggggtgtacaaaagtgtatgagaataaatggtgtctatgtaacattttcct 8076576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 11095356 - 11095289
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  11095356 ctcttttctcttcctaatgcatcgggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 11095289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 51419351 - 51419276
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||| |||||||||||||||| || || ||||||||||||||||  ||||||| |||| | |||||||||||||||    
T  51419351 tcctattctctcttcctaatgtatggggtgtacaagggtgtatggaaataaaaggtgtttatgtaacattttcctt 51419276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 45058542 - 45058468
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttccttg 77  Q
    |||||||||||||||||| ||| || ||||||| ||||||||  | ||||| |||||| ||||||||||||||||    
T  45058542 ctcttctctcttcctaatacatggggtgtacaatggtgtatgcaattaaaaggtgtctatgtaacattttccttg 45058468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 54868883 - 54868817
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||| || ||||||||||||||||  ||||||| |||||| |||| ||||    
T  54868883 tcttctctcttcctaatgcatagggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 54868817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 11347913 - 11347840
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||||| || || |||| ||||||||||| |||||||  |||||| |||| ||||||||    
T  11347913 tcctcttctctcttcctaatgtatggggtgtataagggtgtatgggaataaagggtgtctatgtaccattttcc 11347840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33644309 - 33644378
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||| ||||||||||| |||||||  |||||| |||| ||||    
T  33644309 tcctcttctctcttcctaatgcatggggtgtataagggtgtatgggaataaagggtgtctatgtatcatt 33644378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 35965745 - 35965700
Alignment:
Q  29 tgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||    
T  35965745 tgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcc 35965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 42823222 - 42823295
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| |||  | ||||||||||||||||  | ||||| |||||| |||||||||||||||    
T  42823222 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcctt 42823295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 53982120 - 53982189
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||| |||||| |||||||  |||||| |||| ||||    
T  53982120 tcctcttctctcttcctaatgcatggggtgtacaaggttgtatgggaataaagggtgtctatgtatcatt 53982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 48587087 - 48587023
Alignment:
Q  6 ttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||  |||||| |||| ||||    
T  48587087 ttctctcttcctaatgcatgggatgtacaagggtatatgggaataaagggtgtctatgtatcatt 48587023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 52629412 - 52629452
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatg 44  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  52629412 tcttctctcttcctaatgcatgggatgtacaagggtgtatg 52629452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 8956873 - 8956944
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||| ||||  || |||| |||||||||||||||||||   ||||| |||||||||||||    
T  8956873 ctcttctctcttcctagtgcacagggtgtagaagggtgtatgagaataaatgctgtctatgtaacattttcc 8956944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 47531974 - 47532049
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||| |||||||||||||||| || | ||||||||| ||||||| |||||||  |||| | |||||||||||||||    
T  47531974 tcctattctctcttcctaatgtatggaatgtacaagtgtgtatgggaataaagggtgtttatgtaacattttcctt 47532049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 17470517 - 17470583
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||| ||||||||||   ||||||||||||||  |||||| |||| ||||    
T  17470517 tcttctctcttcctaatgcatgggatgtacaaatatgtatgagaataaatggtgtctatgtatcatt 17470583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 36707419 - 36707350
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||||||  | ||||||||  |||||| |||||||| |||||| |||| ||||    
T  36707419 tcctcttctctcttcctaatgcatgaggtgtacaagaatgtatgggaataaaaggtgtctatgtatcatt 36707350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 35093699 - 35093767
Alignment:
Q  6 ttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||| |||||  ||||||||| ||||||||||||||||   |||||  ||||||||||||    
T  35093699 ttctctcttcctagtgcatgagatgtacaaaggtgtatgagaataaatgatgtctaggtaacattttcc 35093767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9563108 - 9563159
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    ||||||||||||||||||||||||  | ||||||| |||||||| |||||||    
T  9563108 tcctcttctctcttcctaatgcatgagttgtacaaaggtgtatgggaataaa 9563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 14623828 - 14623757
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||| ||| |||||  | |||| |||| ||||||||||||||  |||||| |||||||||||||    
T  14623828 ctcttctctctttctagtgcatgaggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 14623757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 26141513 - 26141446
Alignment:
Q  9 tctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||| || || |||||||| |||||||  ||||||  |||||| |||||||||||||||    
T  26141513 tctcttcctaatgtatggggtgtacaagagtgtatggaaataaagggtgtctatgtaacattttcctt 26141446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31456798 - 31456849
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    ||||||| |||||||||||||||| || |||||||||||| ||| |||||||    
T  31456798 tcctcttttctcttcctaatgcatggggtgtacaagggtgcatgggaataaa 31456849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 36331318 - 36331247
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | |||||  ||| | |||||||||||||    
T  36331318 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaagatgtatatgtaacattttcc 36331247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41189755 - 41189680
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||| ||||||||||| || |  |||||||| |||||||  ||||||  |||||| |||||||||||||||    
T  41189755 tcctcttctttcttcctaatgtatggagtgtacaagagtgtatggaaataaagggtgtctatgtaacattttcctt 41189680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 33118837 - 33118767
Alignment:
Q  5 cttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||| |||| ||||| || ||||||||||||||||  ||||||  ||||||  |||||||||||||    
T  33118837 cttctctctccctagtgcatggggtgtacaagggtgtatggaaataaagggtgtctacgtaacattttcct 33118767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 27714892 - 27714843
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||| ||| ||| || |||||||||||||| |||||||||    
T  27714892 ctcttctctcttcccaatacatggggtgtacaagggtgtacgagaataaa 27714843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 49607523 - 49607592
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||| ||||||||||||||||    |||||||||||||||| |||||||  |||||| |||| ||||    
T  49607523 tcctcttttctcttcctaatgcatgacgtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 49607592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1758447 - 1758404
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatga 45  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||    
T  1758447 tcctcttctctcttcctaatgca-tgggtgtacaaaggtgtatga 1758404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 41758696 - 41758767
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatttt 72  Q
    ||||||||||||||||||||  || || ||||||||| |||||||||||||||||||||| |||||||||||    
T  41758696 tcctcttctctcttcctaatatatggggtgtacaaggatgtatgagaataaaatgtgtctatgtaacatttt 41758767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20700924 - 20700997
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||||| || |||||||||||||||| |||||||  |||||| |||||||||||||    
T  20700924 tcctcttctctcttcctagtgcatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcc 20700997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44152036 - 44152108
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    ||||||||||||||||||||||||  ||| |||||||||||||| |||||||| |||| | ||||||||||||    
T  44152036 tcctcttctctcttcctaatgcatgagatatacaagggtgtatgcgaataaaaggtgtttatgtaacattttc 44152108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10249373 - 10249304
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||| |||||||||||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  10249373 tcctcttttctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 10249304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19930811 - 19930742
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||||||  | |||||||||||||||| |||||||| |||||| |||| ||||    
T  19930811 tcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 19930742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32505639 - 32505570
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  32505639 tcctcttctctcttcttaatgcatggggtgtacaagggtgtatgagaataaagagtgtctatgtatcatt 32505570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 33436088 - 33436032
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtct 60  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||    
T  33436088 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgagaataaaaggtgtct 33436032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 43490232 - 43490303
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  43490232 ctcttctctcttcctaatacatagggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 43490303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 40701590 - 40701656
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||| || ||||||||||||||||  ||||||| |||||| |||| ||||    
T  40701590 tcttctctcttcctaatgcatcgggtgtacaagggtgtatggaaataaaaggtgtctatgtatcatt 40701656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13438452 - 13438521
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||| |||||| |||||||  |||||| |||| ||||    
T  13438452 tcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 13438521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17473129 - 17473198
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||||||  | |||||||||||||||| |||||||  |||||| |||| ||||    
T  17473129 tcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 17473198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28863564 - 28863633
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||||||  | |||||||||||||||| |||||||  |||||| |||| ||||    
T  28863564 tcctcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 28863633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36168945 - 36169018
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||| |||||||||||||||| || || |||||||| |||||||||||||||  |||| | |||||||||||||    
T  36168945 tcctattctctcttcctaatgtatggggtgtacaagagtgtatgagaataaagggtgtttatgtaacattttcc 36169018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 38732465 - 38732538
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| |||  ||||||||||| ||||||  | ||||| |||||| |||||||||||||||    
T  38732465 ctcttctctcttcctaatacatgagatgtacaaggatgtatgcaattaaaaggtgtctatgtaacattttcctt 38732538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 13365464 - 13365536
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| ||| || |||||||||||| |||  | ||||| |||||| ||||||||||||||    
T  13365464 ctcttctctcttcctaatacatggggtgtacaagggtgaatgcaattaaaaggtgtctatgtaacattttcct 13365536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9058589 - 9058640
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||||||| || |||||||| ||||||| |||||||    
T  9058589 tcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaa 9058640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 27864808 - 27864851
Alignment:
Q  9 tctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||| ||| |||||||||||||||||||||||||||    
T  27864808 tctcttcctaatacatgggatgtacaagggtgtatgagaataaa 27864851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 2533232 - 2533306
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||| |||| || || |||||||||||||||| |||||||  |||| | | ||||||||||||    
T  2533232 tcctcttctctcttcccaatgtatggggtgtacaagggtgtatgggaataaagggtgtatatataacattttcct 2533306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 7465723 - 7465657
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||||  |||||| |||| ||||    
T  7465723 tcttctctcttcctaatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 7465657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40613893 - 40613819
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||| |||| ||||| ||||| || || |||||||||||||||| |||||||  |||||| ||||||||||||||    
T  40613893 tcctattctttcttcataatgtatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcct 40613819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 2997476 - 2997403
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||||| |||  | ||||||||||||||||  | ||||| |||||| |||||||||| ||||    
T  2997476 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaagtgtctatgtaacatttccctt 2997403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 4060797 - 4060846
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaa 53  Q
    ||||||||||||||||||||| || ||||||||||||||||  |||||||    
T  4060797 tcttctctcttcctaatgcatggggtgtacaagggtgtatggaaataaaa 4060846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 38882799 - 38882751
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||| |||||||||||||||| || |||||||||||||||| |||||||    
T  38882799 tcttatctcttcctaatgcatggggtgtacaagggtgtatgggaataaa 38882751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 45097724 - 45097652
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||| ||| ||||||||||| |||||||  | |||||  ||| | ||||||||||||||    
T  45097724 ctcttctctcttcctaatacatcggatgtacaagagtgtatgcaattaaaagatgtttatgtaacattttcct 45097652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 5574489 - 5574422
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||| |||||||||||||||| |  |||||||||||||||| |||||||  |||||| |||| ||||    
T  5574489 ctcttttctcttcctaatgcatggcgtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 5574422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 33436346 - 33436385
Alignment:
Q  37 ggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  33436346 ggtgtatgagaataaaaggtgtctatgtaacattttcctt 33436385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 30915575 - 30915615
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatg 44  Q
    ||||||||||||||||| ||| || ||||||||||||||||    
T  30915575 tcttctctcttcctaatacatggggtgtacaagggtgtatg 30915615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 8851 - 8778
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttccttg 77  Q
    |||||||||||||||||  || || ||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  8851 tcttctctcttcctaatatatggggtgtacaagggtgtataagaataaaaggtgtctatgtaacattttccttg 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4854854 - 4854781
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||| |||||| || |||||||||||||| ||||||||||||  |||||| |||||||||||||    
T  4854854 tcctcttctctcttactaatgtatgggatgtacaagggtatatgagaataaagagtgtctatgtaacattttcc 4854781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 12831156 - 12831225
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  12831156 tcctcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaatggtgtctatgtatcatt 12831225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 42354577 - 42354504
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcctt 76  Q
    |||||||||||||||| ||||| || |||| |||||||||||||||||||  |||||| |||||||||||||||    
T  42354577 ctcttctctcttcctagtgcatggggtgtagaagggtgtatgagaataaatggtgtctatgtaacattttcctt 42354504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 504109 - 504043
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  504109 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 504043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 10284619 - 10284549
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||||||| ||||| || ||||||||| ||||| ||||||||| |||||| |||||||||||||    
T  10284619 tcttctctcttcctagtgcatggggtgtacaaggttgtataagaataaaaggtgtctatgtaacattttcc 10284549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15048172 - 15048098
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||||||||||||||| || ||||||||||||||||||  |||||||  |||||| | ||||||||||||    
T  15048172 tcctcttctctcttcctaatgtatgggatgtacaagggtgtatcggaataaagggtgtctatataacattttcct 15048098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 43414572 - 43414498
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    ||||||||||||||||||||| || || ||||||||||||||||  ||||||  |||||| ||||||||||||||    
T  43414572 tcctcttctctcttcctaatgtatggggtgtacaagggtgtatggcaataaagggtgtctatgtaacattttcct 43414498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8841423 - 8841350
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    ||||||||||| |||||| ||||| || |||||||| |||||||||||||||  |||||| |||||||||||||    
T  8841423 tcctcttctcttttcctagtgcatggggtgtacaagagtgtatgagaataaatggtgtctatgtaacattttcc 8841350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23122588 - 23122519
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||  |||||| |||| ||||    
T  23122588 tcctgttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaagggtgtctatgtatcatt 23122519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34012287 - 34012218
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||||  |||||| |||| ||||    
T  34012287 tcctcttctctcttcctaatgcatggggtgtacaagggtgtacgagaataaagggtgtctatgtatcatt 34012218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5957939 - 5958011
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    |||||||||||||||||| |||||  | ||||||||||||||||||||||||  |||| | ||||||||||||    
T  5957939 tcctcttctctcttcctagtgcatgaggtgtacaagggtgtatgagaataaagggtgtttatgtaacattttc 5958011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 44507075 - 44507027
Alignment:
Q  4 tcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  44507075 tcttctctcttcctaatgcatggggtgtacaagggtgtatgagaataaa 44507027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 32707992 - 32707921
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  32707992 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 32707921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40423934 - 40423864
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattt 71  Q
    |||||||||||||||||||| |||  | |||||||||||||||| |||||||| |||||| |||| |||||    
T  40423934 tcctcttctctcttcctaatacatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcattt 40423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 14548031 - 14548100
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||||| || ||||||||| |||||| |||||||  |||||| |||| ||||    
T  14548031 tcctcttctctcttcctaatgcatggggtgtacaaggatgtatgggaataaagggtgtctatgtatcatt 14548100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42710285 - 42710216
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||||| || || |||||||||||||||| |||||||  |||||| |||| ||||    
T  42710285 tcctcttctctcttcctaatgtatggggtgtacaagggtgtatgggaataaagggtgtctgtgtatcatt 42710216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 16056390 - 16056322
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattt 71  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| ||||||||||    
T  16056390 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattt 16056322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9122294 - 9122345
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||||||| || |||||||| ||||||| |||||||    
T  9122294 tcctcttctctcttcctaatgcatggggtgtacaagagtgtatgggaataaa 9122345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 24307782 - 24307715
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||| ||| || ||||||||||||||||  | ||||| |||||| |||||||||    
T  24307782 ctcttctctcttcctaatacatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 24307715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 32032835 - 32032906
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| |||  | ||||||||||||||||  | ||||| |||||| |||||||||||||    
T  32032835 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttcc 32032906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 20074907 - 20074869
Alignment:
Q  37 ggtgtatgagaataaaatgtgtctctgtaacattttcct 75  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  20074907 ggtgtatgagaataaaatgtgtctatgtaacattttcct 20074869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 15197442 - 15197511
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||| |||||||| |||||||  | |||||||||||||||| |||||||| |||||| |||| ||||    
T  15197442 tcctcttttctcttccaaatgcatgaggtgtacaagggtgtatgggaataaaaagtgtctatgtatcatt 15197511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37038588 - 37038661
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttcc 74  Q
    |||||||||||||||||| ||||| || |||||||||||||||   ||||||  |||| | |||||||||||||    
T  37038588 tcctcttctctcttcctagtgcatggggtgtacaagggtgtatagaaataaagggtgtttatgtaacattttcc 37038661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1179931 - 1179880
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaa 52  Q
    |||||||||||||||||||||||| || ||||||||| | |||| |||||||    
T  1179931 tcctcttctctcttcctaatgcatggggtgtacaaggatatatgggaataaa 1179880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 30479463 - 30479396
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||| |||  | ||||||||||||||||  | ||||| |||||| |||||||||    
T  30479463 ctcttctctcttcctaatacatgaggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 30479396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 34307327 - 34307394
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    ||||||||||||||||||  || || ||||||||||||||||  | ||||| |||||| |||||||||    
T  34307327 ctcttctctcttcctaatatatggggtgtacaagggtgtatgcaattaaaaggtgtctatgtaacatt 34307394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 4140 - 4207
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacatt 70  Q
    |||||||||||||||||||||| || |||||||||||||||| |||||||  |||||| |||| ||||    
T  4140 ctcttctctcttcctaatgcatggggtgtacaagggtgtatgggaataaatggtgtctatgtatcatt 4207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 152609 - 152679
Alignment:
Q  3 ctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    |||||||||||| ||||| ||| |||||||||||||||||||  | ||||| |||||| ||||||||||||    
T  152609 ctcttctctctttctaatacatgggatgtacaagggtgtatgcaattaaaaggtgtctatgtaacattttc 152679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 920 - 848
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    |||||||||||||||||| ||||| || |||||||| ||||||| |||||||  |||| | ||||||||||||    
T  920 tcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacattttc 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 920 - 848
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatgagaataaaatgtgtctctgtaacattttc 73  Q
    |||||||||||||||||| ||||| || |||||||| ||||||| |||||||  |||| | ||||||||||||    
T  920 tcctcttctctcttcctagtgcatggggtgtacaagagtgtatgggaataaagggtgtttatgtaacattttc 848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10100 - 10057
Alignment:
Q  1 tcctcttctctcttcctaatgcattggatgtacaagggtgtatg 44  Q
    |||||||||||||||||||||||| || ||||||||||||||||    
T  10100 tcctcttctctcttcctaatgcatagggtgtacaagggtgtatg 10057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University