View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_8 (Length: 628)
Name: NF16757_low_8
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 18 - 618
Target Start/End: Complemental strand, 29210411 - 29209811
Alignment:
| Q |
18 |
aataaaaaggatcaatttgtgtttcagagtaaaccagaagcttcgggggcgaattttgttgagtttaaatcacatgggccgaagattggtggaaaagaag |
117 |
Q |
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| T |
29210411 |
aataaaaaggatcaatttgtgtttcagagtaaaccagaagcttcgggggcgaattttgttgagtttaaatcacatgggccgaagattggtggaaaagaag |
29210312 |
T |
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| Q |
118 |
ggaagctgaaggagaaaactgggaatatgaggatgaataaaagtagggtgaatttgaagaattctacaccggcaccggtgcaaagatggaatggacatgg |
217 |
Q |
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| T |
29210311 |
ggaagctgaaggagaaaactgggaatatgaggatgaataaaagtagggtgaatttgaagaattctacaccggcaccagtgcaaagatggaatggacatgg |
29210212 |
T |
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| Q |
218 |
ttttgtttttaaaggaagtgttttgcaagaagatcatcctcagggttcatctgagagttgttcgccaatggaggtttctccttatcaggaaaaactagct |
317 |
Q |
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| T |
29210211 |
ttttgtttttaaaggaagtgttttgcaagaagatcgtcctcaaggttcatctgagagttgttcgccaatggaggtttctccttatcaggaaaaactagct |
29210112 |
T |
|
| Q |
318 |
gagagtcgaacatcgagggaaagttctgtgaattccaatgagtcactacgtgttgacgctgaagattctgtaccgatgaattttgttgatcacattgatg |
417 |
Q |
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| T |
29210111 |
gagagtcgaacatcgagggaaagttctgtgaattccaatgagtcacttcgtgttgacgctgaagattctgtaccgatgaattttgttgatcacattgatg |
29210012 |
T |
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| Q |
418 |
aagatttgattggggcgactgagaaaatgaatataaatgagagtagtgaagttgcgagggaagatagaaaggagggaaaatcagagtgtggtgtacgtga |
517 |
Q |
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| T |
29210011 |
aagatttgattggggcgactgagaaaatgaatataaatgagagtagtgaagttgcgagggaagatagaaaggagggaaaatcagagtgtggtgtaagtga |
29209912 |
T |
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| Q |
518 |
ggatgtttgtgttgaggaagagacaaaggatgagtcagtttctggggttgaaaccgaaagctttaagtctgctagtgatagtgtggacgtaactgatgat |
617 |
Q |
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| T |
29209911 |
ggatgtttgtgttgaggaagagacaaaggatgagtcagtttctggggttgaaaccgaaagctttaagtctgctagtgatagtgtggacgtaactgatgat |
29209812 |
T |
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| Q |
618 |
g |
618 |
Q |
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| T |
29209811 |
g |
29209811 |
T |
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