View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16757_low_80 (Length: 222)

Name: NF16757_low_80
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16757_low_80
NF16757_low_80
[»] chr5 (15 HSPs)
chr5 (1-205)||(9511807-9512011)
chr5 (120-192)||(11335313-11335385)
chr5 (76-192)||(11335241-11335353)
chr5 (80-146)||(11335135-11335200)
chr5 (26-147)||(11335324-11335437)
chr5 (121-169)||(27314825-27314873)
chr5 (7-46)||(9511782-9511821)
chr5 (92-183)||(9511973-9512063)
chr5 (120-175)||(24137184-24137239)
chr5 (5-39)||(11335393-11335427)
chr5 (5-35)||(24136925-24136955)
chr5 (5-39)||(24137079-24137113)
chr5 (5-46)||(24136894-24136935)
chr5 (5-106)||(24137049-24137148)
chr5 (97-147)||(11335175-11335222)
[»] chr7 (16 HSPs)
chr7 (5-175)||(21813853-21814021)
chr7 (97-193)||(44338638-44338732)
chr7 (123-192)||(46963667-46963737)
chr7 (5-74)||(11828574-11828643)
chr7 (123-192)||(26403127-26403196)
chr7 (119-192)||(46963742-46963814)
chr7 (123-192)||(46963591-46963662)
chr7 (126-175)||(6532148-6532195)
chr7 (97-156)||(46963552-46963611)
chr7 (5-92)||(15623085-15623171)
chr7 (7-46)||(21813824-21813863)
chr7 (7-46)||(44338292-44338331)
chr7 (9-46)||(44338386-44338423)
chr7 (124-153)||(44338570-44338599)
chr7 (76-116)||(26403156-26403195)
chr7 (125-165)||(44338605-44338644)
[»] chr2 (16 HSPs)
chr2 (9-175)||(38584002-38584166)
chr2 (121-194)||(38583915-38583987)
chr2 (120-192)||(29409359-29409430)
chr2 (76-181)||(38583961-38584064)
chr2 (123-192)||(8986368-8986438)
chr2 (123-192)||(8986443-8986511)
chr2 (97-156)||(8986491-8986550)
chr2 (7-46)||(38584195-38584234)
chr2 (120-192)||(38584024-38584097)
chr2 (124-192)||(8986296-8986363)
chr2 (11-67)||(38584139-38584195)
chr2 (5-92)||(1173283-1173369)
chr2 (99-183)||(32290735-32290819)
chr2 (5-39)||(1173491-1173525)
chr2 (7-92)||(1173469-1173553)
chr2 (10-46)||(32290604-32290640)
[»] chr6 (11 HSPs)
chr6 (5-94)||(28063527-28063615)
chr6 (123-193)||(18984142-18984212)
chr6 (106-192)||(22860830-22860917)
chr6 (76-175)||(22860877-22860972)
chr6 (97-153)||(18981359-18981413)
chr6 (5-39)||(21862274-21862308)
chr6 (99-153)||(22860788-22860841)
chr6 (120-202)||(9291120-9291198)
chr6 (98-156)||(22860752-22860809)
chr6 (125-156)||(9291197-9291228)
chr6 (5-92)||(21862244-21862331)
[»] scaffold0007 (1 HSPs)
scaffold0007 (123-193)||(14679-14749)
[»] chr3 (6 HSPs)
chr3 (119-189)||(42530809-42530879)
chr3 (5-147)||(42530739-42530871)
chr3 (78-156)||(42530844-42530923)
chr3 (6-39)||(46692067-46692100)
chr3 (5-51)||(50295560-50295606)
chr3 (5-90)||(50295591-50295677)
[»] chr8 (12 HSPs)
chr8 (97-193)||(20242315-20242409)
chr8 (97-193)||(20250751-20250845)
chr8 (121-156)||(16579280-16579315)
chr8 (7-46)||(20241969-20242008)
chr8 (7-46)||(20251059-20251098)
chr8 (9-46)||(20242063-20242100)
chr8 (124-153)||(20242247-20242276)
chr8 (124-153)||(20250884-20250913)
chr8 (9-46)||(20250967-20251004)
chr8 (121-157)||(16584023-16584059)
chr8 (125-165)||(20242282-20242321)
chr8 (125-165)||(20250839-20250878)
[»] chr4 (13 HSPs)
chr4 (99-202)||(16871096-16871199)
chr4 (123-192)||(16870899-16870969)
chr4 (6-92)||(54147717-54147802)
chr4 (123-192)||(16870974-16871042)
chr4 (97-156)||(16871022-16871081)
chr4 (97-145)||(16871169-16871216)
chr4 (99-181)||(16871060-16871142)
chr4 (123-170)||(24225694-24225741)
chr4 (5-39)||(54147871-54147905)
chr4 (5-46)||(42265429-42265469)
chr4 (5-44)||(24225512-24225551)
chr4 (129-170)||(24225632-24225673)
chr4 (124-192)||(16870827-16870894)
[»] chr1 (10 HSPs)
chr1 (101-191)||(9168155-9168243)
chr1 (7-92)||(15630023-15630107)
chr1 (5-53)||(19825103-19825151)
chr1 (7-73)||(2072366-2072432)
chr1 (5-39)||(15629952-15629986)
chr1 (5-39)||(15630044-15630078)
chr1 (5-73)||(2075896-2075964)
chr1 (5-201)||(15629833-15630016)
chr1 (122-170)||(3775109-3775155)
chr1 (120-152)||(12177187-12177219)
[»] scaffold0499 (1 HSPs)
scaffold0499 (5-44)||(7292-7331)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 9511807 - 9512011
Alignment:
Q  1 cttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttctaattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9511807 cttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatttcttatcccccttttgattctttctaattg 9511906  T
Q  101 attgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctcttcctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9511907 attgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctcttcctttt 9512006  T
Q  201 tggtt 205  Q
    |||||    
T  9512007 tggtt 9512011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 11335385 - 11335313
Alignment:
Q  120 ccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  11335385 ccccttttgattcttttgattgattacacttctccccctattgattcttctgattgattgcattgcacttctc 11335313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 11335353 - 11335241
Alignment:
Q  76 tcccccttttgattctttctaattgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattg 175  Q
    ||||||| ||||||||| || ||||||||||||||||||||   |||||||| |||||| ||||||||| ||||||||| | |||||||||| || ||||    
T  11335353 tccccctattgattctt-ctgattgattgcattgcacttct---ccccttttcattcttttgattgatttcacttctcctcctattgattctccttattg 11335258  T
Q  176 tttgcattgcacttctc 192  Q
     |||| |||||||||||    
T  11335257 attgctttgcacttctc 11335241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 11335200 - 11335135
Alignment:
Q  80 ccttttgattctttctaattgattgcattgcacttctgatccccttttgattcttctgattgattgc 146  Q
    ||||||||||||| || ||||||||||||||||||||  ||||||| ||||||||||||||||||||    
T  11335200 ccttttgattctt-ctgattgattgcattgcacttctcctccccttatgattcttctgattgattgc 11335135  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 11335437 - 11335324
Alignment:
Q  26 ctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttctaattgattgcattgcacttctgatcccctt 125  Q
    |||||| |||||||||||||| |||  |||  |||||||||| |||||| |||||||||||||||||     ||||||| ||| |||||||   |||||     
T  11335437 ctcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctcccccttttgattctt-----ttgattg-attacacttct--cccccta 11335346  T
Q  126 ttgattcttctgattgattgca 147  Q
    ||||||||||||||||||||||    
T  11335345 ttgattcttctgattgattgca 11335324  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 27314825 - 27314873
Alignment:
Q  121 cccttttgattcttctgattgattgcacttctccccatattgattcttc 169  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  27314825 cccttttgatttttgtgattgattgcacttctccccattttgattcttc 27314873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 9511782 - 9511821
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  9511782 ttgtttggtgagtcgagtgctcacacttcggttgtttggt 9511821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 9511973 - 9512063
Alignment:
Q  92 ttctaattgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcatt 183  Q
    |||| |||| |||||||||||||||  |||  ||||| || ||||||||||||||||||||||   | ||| |||||||||||| |||||||    
T  9511973 ttctcattgtttgcattgcacttctcttcct-ttttggttattctgattgattgcacttctccttgttttggttcttctcattgattgcatt 9512063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 24137184 - 24137239
Alignment:
Q  120 ccccttttgattcttctgattgattgcacttctccccatattgattcttctcattg 175  Q
    ||||||||| |||||||||||||||| | |||||||| | ||||||||||| ||||    
T  24137184 ccccttttggttcttctgattgattgtatttctcccccttttgattcttctgattg 24137239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 11335427 - 11335393
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    |||||||||||||||||| ||||||||||||||||    
T  11335427 ggttgtttggtgagtcgaatgctcacaatttggtt 11335393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 24136925 - 24136955
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaattt 35  Q
    |||||||||||||||||||||||||||||||    
T  24136925 ggttgtttggtgagtcgagtgctcacaattt 24136955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 24137079 - 24137113
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    ||||||||||||||| |||||||||||||||||||    
T  24137079 ggttgtttggtgagttgagtgctcacaatttggtt 24137113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 24136894 - 24136935
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||| ||| | |||||||||||||||||||||    
T  24136894 ggttgtttggtgagccgacttctcacaatttggttgtttggt 24136935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 24137049 - 24137148
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttctaattgattg 104  Q
    |||||||||||||||| ||| ||||| ||||||||||||||| |||| | |  |||||||||| ||| |   |||||||||| ||| ||||||| |||||    
T  24137049 ggttgtttggtgagtctagttctcac-atttggttgtttggtgagttgagtgctcacaatttggtttttctccccccttttggttc-ttctaatagattg 24137146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 11335222 - 11335175
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattgattgca 147  Q
    ||||||||| |||||||||| |   ||||||||||||||||||||||||||    
T  11335222 attgattgctttgcacttctca---ccttttgattcttctgattgattgca 11335175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 21813853 - 21814021
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttctaattgattg 104  Q
    |||||||||||||||||||||||||||||||||||| ||||| |  ||| ||  ||||||||| ||| || ||||||||||||||| ||||   |||||     
T  21813853 ggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggttttttctcccccttttgattc-ttctgtgtgattc 21813951  T
Q  105 cattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattg 175  Q
    ||||||||||||  |||| ||||||||||||||||| |||| | |||||||| | |||||| |||| ||||    
T  21813952 cattgcacttct-ctccctttttgattcttctgattcattgtatttctcccccttttgattgttctaattg 21814021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 44338638 - 44338732
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctct 193  Q
    ||||||| ||||||||||||   ||||||||||||||| ||||||||||||||| ||||| ||| ||||||||| ||||   |||||||||||||||    
T  44338638 attgatttcattgcacttctc--ccccttttgattcttttgattgattgcacttatccccttatggattcttctgattgagagcattgcacttctct 44338732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 46963737 - 46963667
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattg-tttgcattgcacttctc 192  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||  ||||||||||||||||    
T  46963737 cttttgattcttctgattgattgcatttctccccctattggttcttctgattgcattgcattgcacttctc 46963667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 11828643 - 11828574
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttctt 74  Q
    |||||| |||||||||| ||||||||| |||||||||||||| |||||| || |||||||||| ||||||    
T  11828643 ggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtttctt 11828574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 26403127 - 26403196
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||||||| |||||||| || |||||||||||| | ||||||||| | |||| ||||||||||||||||    
T  26403127 cttttgattattctgatttatagcacttctcccccttttgattcttttgattgattgcattgcacttctc 26403196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 46963814 - 46963742
Alignment:
Q  119 tccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||| ||||||  |||| |||||||| |||||||    
T  46963814 tcccctttttattcttctcattgattgcacttctcccc-tattggttcttccgattgattgcattgtacttctc 46963742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 46963662 - 46963591
Alignment:
Q  123 cttttgattcttctgattgattgcacttct--ccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||||||||||||||||||||||||||||   ||| ||||| ||||||  |||| ||||||||||||||||    
T  46963662 cttttgattcttctgattgattgcacttcttctcccctattggttcttccgattgattgcattgcacttctc 46963591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 6532148 - 6532195
Alignment:
Q  126 ttgattcttctgattgattgcacttctccccatattgattcttctcattg 175  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  6532148 ttgattcttctgattgattgcacttctccc--tattgattcttctgattg 6532195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 46963611 - 46963552
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattg-attgcacttctcccc 156  Q
    ||||||||||||||||||||   |||||||||||||||| ||||| |||||||||||||||    
T  46963611 attgattgcattgcacttct-ccccccttttgattcttccgattgcattgcacttctcccc 46963552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 15623171 - 15623085
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctt 92  Q
    |||||||||||||||| ||| |||||| |||||||||||||| |||| | |  |||||||||  |||||| |||||||  ||||||||    
T  15623171 ggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaattttgtttcttctccccctactgattctt 15623085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 21813824 - 21813863
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  21813824 ttgtttggtgagtcaagtgctcacactttggttgtttggt 21813863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 44338292 - 44338331
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  44338292 ttgtttggtgagtcgagttctcacattttggttgtttggt 44338331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 44338386 - 44338423
Alignment:
Q  9 gtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  44338386 gtttggtgagtcgagttctcacactttggttgtttggt 44338423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 44338570 - 44338599
Alignment:
Q  124 ttttgattcttctgattgattgcacttctc 153  Q
    ||||||||||||||||||||||||||||||    
T  44338570 ttttgattcttctgattgattgcacttctc 44338599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 26403156 - 26403195
Alignment:
Q  76 tcccccttttgattctttctaattgattgcattgcacttct 116  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  26403156 tcccccttttgattcttt-tgattgattgcattgcacttct 26403195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 44338605 - 44338644
Alignment:
Q  125 tttgattcttctgattgattgcacttctccccatattgatt 165  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  44338605 tttgactcttctgattgattgcacttctcccc-tattgatt 44338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 38584166 - 38584002
Alignment:
Q  9 gtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttctaattgattgcatt 108  Q
    |||||||||||  ||||||||||||||||||||||||| ||||||||  |||||||||||||| || ||||||||||||||| |||||    |||||||     
T  38584166 gtttggtgagttaagtgctcacaatttggttgtttggtgagttaaatgctcacaatttgattttttctcccccttttgattc-ttcta----attgcatc 38584072  T
Q  109 gcacttctgatccccttttgattcttctgattg-----attgcacttctccccatattgattcttctcattg 175  Q
    ||||||||   |||||||||||| |||||| ||     ||||||||||||||| | ||||||||||| ||||    
T  38584071 gcacttct--cccccttttgatttttctgagtgattgcattgcacttctcccccttttgattcttctgattg 38584002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 194
Target Start/End: Complemental strand, 38583987 - 38583915
Alignment:
Q  121 cccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctctt 194  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||| ||||||||||||||    
T  38583987 cccttttgattcttctgattgattgcacttctccccct-ttgattcttctgattgattgtattgcacttctctt 38583915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 29409430 - 29409359
Alignment:
Q  120 ccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||| ||||||||||||||||||||||| ||||||| | ||||||||||| |||| ||||||||||||||||    
T  29409430 cccctattgattcttctgattgattgcacgtctcccc-tgttgattcttctgattgattgcattgcacttctc 29409359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 38584064 - 38583961
Alignment:
Q  76 tcccccttttgattctttctaattgattgcattgcacttctgatccccttttgattcttctgattg-attgcacttctccccatattgattcttctcatt 174  Q
    |||||||||||||| ||||| | ||||||||||||||||||   |||||||||||||||||||||| |||||| ||||| || | ||||||||||| |||    
T  38584064 tcccccttttgatt-tttctgagtgattgcattgcacttctc--ccccttttgattcttctgattgcattgcatttctcgcccttttgattcttctgatt 38583968  T
Q  175 gtttgca 181  Q
    | |||||    
T  38583967 gattgca 38583961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 8986368 - 8986438
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattg-tttgcattgcacttctc 192  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||  ||||||||||||||||    
T  8986368 cttttgattcttctgattgattgcatttctccccctattggttcttctgattgcattgcattgcacttctc 8986438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 8986443 - 8986511
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||||||||||| |||||||||||||||| ||| ||||| ||||||  |||| ||||||||||||||||    
T  8986443 cttttgattcttccgattgattgcacttctaccc-tattggttcttccgattgattgcattgcacttctc 8986511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 8986491 - 8986550
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattg-attgcacttctcccc 156  Q
    ||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||    
T  8986491 attgattgcattgcacttctcc-ccccttttgattcttctgattgcattgcacttctcccc 8986550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 38584234 - 38584195
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  38584234 ttgtttggtgagtcgagtgctcacattttggttgtttggt 38584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 38584097 - 38584024
Alignment:
Q  120 ccccttttgattcttctgattg-attgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||||||||||||||| |||| || |||||||||||| | |||||| |||| | || ||||||||||||||||    
T  38584097 ccccttttgattcttctaattgcatcgcacttctcccccttttgatttttctgagtgattgcattgcacttctc 38584024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 8986296 - 8986363
Alignment:
Q  124 ttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    |||| |||||||| ||||||||||||||||||| ||||| ||||||  |||| |||||||| |||||||    
T  8986296 tttttattcttctcattgattgcacttctcccc-tattggttcttccgattgattgcattgtacttctc 8986363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 38584195 - 38584139
Alignment:
Q  11 ttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttg 67  Q
    |||||||||| ||||||||||||||||| ||||||| |||||| |  ||||||||||    
T  38584195 ttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttg 38584139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 1173369 - 1173283
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctt 92  Q
    |||||||||||||||| ||| |||||| |||| |||||| || |||  | |  |||||||||| |||||| |||||||||||||||||    
T  1173369 ggttgtttggtgagtctagttctcaca-tttgattgtttagtgagtcgagtgctcacaatttggtttcttctcccccttttgattctt 1173283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 32290735 - 32290819
Alignment:
Q  99 tgattgcattgcacttctgatccccttttgattcttctgattg-attgcacttctccc-catattgattcttctcattgtttgcatt 183  Q
    ||||||||||||||||||   ||||||||| |||||||||||| |||||||||||||| ||| ||  ||||||| |||| |||||||    
T  32290735 tgattgcattgcacttct--cccccttttggttcttctgattgtattgcacttctccctcattttagttcttctgattgattgcatt 32290819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 1173525 - 1173491
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    |||||||||||||||| ||||||||||||||||||    
T  1173525 ggttgtttggtgagtctagtgctcacaatttggtt 1173491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 1173553 - 1173469
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctt 92  Q
    |||||||||||||  || ||||||| |||||||||||||| |||  | |  |||||||||| |||||| || ||||||||||||||    
T  1173553 ttgtttggtgagta-agcgctcacactttggttgtttggtgagtctagtgctcacaatttggtttcttctcgcccttttgattctt 1173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 32290604 - 32290640
Alignment:
Q  10 tttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  32290604 tttggtgggtcaagtgctcacaatttggttgtttggt 32290640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 28063615 - 28063527
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttc 94  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||| |||  || ||||||||||||||  ||||||||||||||||||    
T  28063615 ggttgtttggtgagtctagttctcaca-tttggttgtttggtaagttgaattctcccaatttgatttcttcacccccttttgattctttc 28063527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 18984142 - 18984212
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctct 193  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||| |||| | |||||||||||||||    
T  18984142 cttttgattcttctgattgattgcacttctccccttatggatttttctgattgatagcattgcacttctct 18984212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 22860830 - 22860917
Alignment:
Q  106 attgcacttctgatccccttttgattcttctgattg-attgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    |||||||||||   ||| |||||||||||||||||  ||||||||||||||| ||||||||||| | |||| ||||||||||||||||    
T  22860830 attgcacttctctcccctttttgattcttctgattccattgcacttctccccctattgattcttttgattgattgcattgcacttctc 22860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 22860877 - 22860972
Alignment:
Q  76 tcccccttttgattctttctaattgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattg 175  Q
    ||||||| |||||||||| | ||||||||||||||||||||   ||||||||| |||||| ||||||||||| |||||||| | ||| ||||||| ||||    
T  22860877 tccccctattgattcttt-tgattgattgcattgcacttct---ccccttttggttcttccgattgattgcatttctcccccttttggttcttctgattg 22860972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 18981359 - 18981413
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctc 153  Q
    |||||||||||||||||| |  || ||||||||||||||||||||||||||||||||    
T  18981359 attgattgcattgcactttt--tctccttttgattcttctgattgattgcacttctc 18981413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 21862274 - 21862308
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    |||||||||||||||||||||||||||||||||||    
T  21862274 ggttgtttggtgagtcgagtgctcacaatttggtt 21862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 22860788 - 22860841
Alignment:
Q  99 tgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctc 153  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  22860788 tgattgcattgcacttctcc-ccccttttggttcttctgattgattgcacttctc 22860841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 9291198 - 9291120
Alignment:
Q  120 ccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctcttcctttttg 202  Q
    ||||||||| ||||||||||||||||||||||||||    |||||||||    ||| ||||||||||||||||  ||||||||    
T  9291198 ccccttttggttcttctgattgattgcacttctccctcctttgattctt----ttgattgcattgcacttctccccctttttg 9291120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 22860752 - 22860809
Alignment:
Q  98 ttgattgcattgcacttctgatccccttttgattcttctgattg-attgcacttctcccc 156  Q
    |||||||||||||||||||    ||||||||||||||||||||| |||||||||||||||    
T  22860752 ttgattgcattgcacttctct--cccttttgattcttctgattgcattgcacttctcccc 22860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 156
Target Start/End: Complemental strand, 9291228 - 9291197
Alignment:
Q  125 tttgattcttctgattgattgcacttctcccc 156  Q
    ||||||||||||||||||||||||||||||||    
T  9291228 tttgattcttctgattgattgcacttctcccc 9291197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 21862244 - 21862331
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatccccc-ttttgattctt 92  Q
    |||||||||||||||| ||  ||||| ||||||||||||||| |||  | |  |||||||||| |||||| |||||| |||||||||||    
T  21862244 ggttgtttggtgagtctagctctcac-atttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattctt 21862331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 193
Target Start/End: Complemental strand, 14749 - 14679
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctct 193  Q
    |||||||||||||||||||||||||||||||||| ||| |||| |||| |||| | |||||||||||||||    
T  14749 cttttgattcttctgattgattgcacttctccccttatggatttttctgattgatagcattgcacttctct 14679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 42530809 - 42530879
Alignment:
Q  119 tccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcactt 189  Q
    |||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| ||||||| |||||    
T  42530809 tccccttttgattcttctgattgattgcacttcttccccttttgattcttctgattgattgcatttcactt 42530879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 42530739 - 42530871
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttctaattgattg 104  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||     |  |||||||||| |||||| | ||||||||||||| |||| ||||        
T  42530739 ggttgtttggtgagtcgagttctcacactttggttgtttggtgag-cgtgtgctcacaatttggtttcttct-ccccttttgattc-ttctgattg---- 42530831  T
Q  105 cattgcacttctgatccccttttgattcttctgattgattgca 147  Q
     |||||||||||  |||||||||||||||||||||||||||||    
T  42530832 -attgcacttct--tccccttttgattcttctgattgattgca 42530871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 42530844 - 42530923
Alignment:
Q  78 ccccttttgattctttctaattgattgcattgcactt-ctgatccc-cttttgattcttctgattgattgcacttctcccc 156  Q
    ||||||||||||||| || |||||||||||| ||||| ||  |||| |||||| |||||||||||||||||||||||||||    
T  42530844 ccccttttgattctt-ctgattgattgcatttcacttacttctccctcttttggttcttctgattgattgcacttctcccc 42530923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 46692100 - 46692067
Alignment:
Q  6 gttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    ||||||||||||||||||||||||||||||||||    
T  46692100 gttgtttggtgagtcgagtgctcacaatttggtt 46692067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 50295560 - 50295606
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagtt 51  Q
    |||||||| |||||||||||||||||| || ||||||||||| ||||    
T  50295560 ggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagtt 50295606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 50295591 - 50295677
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttat-cccccttttgattc 90  Q
    ||||||||||||||| |||| |||  | |||| ||||||||| |||||| || ||| |||||| |||||| | ||||||||||||||    
T  50295591 ggttgtttggtgagttgagttctcgtactttgattgtttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 193
Target Start/End: Original strand, 20242315 - 20242409
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctct 193  Q
    ||||||| ||||||||||||   ||||||||||||||| ||||||||||||||| ||||| ||| ||||||||| ||||   |||||||||||||||    
T  20242315 attgatttcattgcacttctc--ccccttttgattcttttgattgattgcacttatccccttatggattcttctgattgagagcattgcacttctct 20242409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 193
Target Start/End: Complemental strand, 20250845 - 20250751
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctct 193  Q
    ||||||| ||||||||||||   ||||||||||||||| ||||||||||||||| ||||| ||| ||||||||| ||||   |||||||||||||||    
T  20250845 attgatttcattgcacttctc--ccccttttgattcttttgattgattgcacttatccccttatggattcttctgattgagagcattgcacttctct 20250751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 16579315 - 16579280
Alignment:
Q  121 cccttttgattcttctgattgattgcacttctcccc 156  Q
    |||||||||||||||| |||||||||||||||||||    
T  16579315 cccttttgattcttcttattgattgcacttctcccc 16579280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 20241969 - 20242008
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  20241969 ttgtttggtgagtcgagttctcacattttggttgtttggt 20242008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 20251098 - 20251059
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  20251098 ttgtttggtgagtcgagttctcacattttggttgtttggt 20251059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 20242063 - 20242100
Alignment:
Q  9 gtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  20242063 gtttggtgagtcgagttctcacactttggttgtttggt 20242100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 20242247 - 20242276
Alignment:
Q  124 ttttgattcttctgattgattgcacttctc 153  Q
    ||||||||||||||||||||||||||||||    
T  20242247 ttttgattcttctgattgattgcacttctc 20242276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 20250913 - 20250884
Alignment:
Q  124 ttttgattcttctgattgattgcacttctc 153  Q
    ||||||||||||||||||||||||||||||    
T  20250913 ttttgattcttctgattgattgcacttctc 20250884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 20251004 - 20250967
Alignment:
Q  9 gtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  20251004 gtttggtgagtcgagttctcacactttggttgtttggt 20250967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 16584059 - 16584023
Alignment:
Q  121 cccttttgattcttctgattgattgcacttctcccca 157  Q
    |||||||||||||||| |||| |||||||||||||||    
T  16584059 cccttttgattcttcttattgcttgcacttctcccca 16584023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 20242282 - 20242321
Alignment:
Q  125 tttgattcttctgattgattgcacttctccccatattgatt 165  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  20242282 tttgactcttctgattgattgcacttctcccc-tattgatt 20242321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 20250878 - 20250839
Alignment:
Q  125 tttgattcttctgattgattgcacttctccccatattgatt 165  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  20250878 tttgactcttctgattgattgcacttctcccc-tattgatt 20250839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 16871096 - 16871199
Alignment:
Q  99 tgattgcattgcacttctgatccccttttgattcttctgattgattgcacttctcccc--atattgattcttctcattgtttgcattgcacttctcttcc 196  Q
    ||||||||||||||||||   || |||||| |||||||||||||||||||||||||||   | ||||||| ||| |||| ||||||||||||||||| ||    
T  16871096 tgattgcattgcacttctc--ccacttttggttcttctgattgattgcacttctcccccttttttgattcgtctgattgattgcattgcacttctctccc 16871193  T
Q  197 tttttg 202  Q
     |||||    
T  16871194 cttttg 16871199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 16870899 - 16870969
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattg-tttgcattgcacttctc 192  Q
    ||||||||||||||||||||||||| |||||| | ||||| ||||||| ||||  ||||||||||||||||    
T  16870899 cttttgattcttctgattgattgcatttctccacctattggttcttctgattgcattgcattgcacttctc 16870969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 54147717 - 54147802
Alignment:
Q  6 gttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctt 92  Q
    ||||||||||||||| ||| |||||| |||||||||||||| ||||   |  |||||||||| |||||| |||||||||||||||||    
T  54147717 gttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctcacaatttggtttctt-tcccccttttgattctt 54147802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 16870974 - 16871042
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    ||||||||||||| |||||||||||||| ||||| ||||| ||||||  |||| ||||||||||||||||    
T  16870974 cttttgattcttccgattgattgcacttttcccc-tattggttcttccgattgattgcattgcacttctc 16871042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 16871022 - 16871081
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattg-attgcacttctcccc 156  Q
    ||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||    
T  16871022 attgattgcattgcacttctcc-ccccttttgattcttctgattgcattgcacttctcccc 16871081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 16871169 - 16871216
Alignment:
Q  97 attgattgcattgcacttctgatccccttttgattcttctgattgattg 145  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  16871169 attgattgcattgcacttctc-tccccttttgattcttctgattgattg 16871216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 16871060 - 16871142
Alignment:
Q  99 tgattgcattgcacttctgatccccttttgattcttctgattg-attgcacttctccccatattgattcttctcattgtttgca 181  Q
    ||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||  | ||| ||||||| |||| |||||    
T  16871060 tgattgcattgcacttctcc-ccccttttgattcttctgattgcattgcacttctcccacttttggttcttctgattgattgca 16871142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 24225694 - 24225741
Alignment:
Q  123 cttttgattcttctgattgattgcacttctccccatattgattcttct 170  Q
    ||||||||||||||||||||||||| |||||||| | |||||||||||    
T  24225694 cttttgattcttctgattgattgcatttctcccccttttgattcttct 24225741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 54147871 - 54147905
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    |||||||||||||||||||||||||||||||||||    
T  54147871 ggttgtttggtgagtcgagtgctcacaatttggtt 54147905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 42265429 - 42265469
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggt 46  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  42265429 ggttgtttggtgagtcgagt-ctcacaatttggttgtttggt 42265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 24225512 - 24225551
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttg 44  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  24225512 ggttgtttggtgaatcgagtgcttacaatttggttgtttg 24225551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 24225632 - 24225673
Alignment:
Q  129 attcttctgattgattgcacttctccccatattgattcttct 170  Q
    |||||||||||| ||||||||||||||| | |||||||||||    
T  24225632 attcttctgattcattgcacttctcccctttttgattcttct 24225673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 16870827 - 16870894
Alignment:
Q  124 ttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctc 192  Q
    |||| |||||||| ||||||||||||||||||| | ||| ||||||  |||| |||||||| |||||||    
T  16870827 tttttattcttctcattgattgcacttctcccc-tgttggttcttccgattgattgcattgtacttctc 16870894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 9168243 - 9168155
Alignment:
Q  101 attgcattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttct 191  Q
    ||||||||||||||||  |||  |||||||||||||||| |||||||||||||||  ||| ||||||||| |||| | |||||||||||||    
T  9168243 attgcattgcacttctcctcc--ttttgattcttctgatcgattgcacttctccctttatggattcttctaattgatagcattgcacttct 9168155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 15630107 - 15630023
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctt 92  Q
    ||||||||||||||||||||||||| |||||||||||||| |||  | |  |||||||||| |||||| | |||||||||||||||    
T  15630107 ttgtttggtgagtcgagtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtttcttct-ccccttttgattctt 15630023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 19825151 - 19825103
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaa 53  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  19825151 ggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaa 19825103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 2072432 - 2072366
Alignment:
Q  7 ttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttct 73  Q
    ||||||| ||||||||||||||| | |||||||||||||| |||||  || |||||||||| |||||    
T  2072432 ttgtttgatgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttct 2072366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 15629986 - 15629952
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    |||||||||||||||||||||||||||||||||||    
T  15629986 ggttgtttggtgagtcgagtgctcacaatttggtt 15629952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 15630078 - 15630044
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggtt 39  Q
    |||||||||||||||||||||||||||||||||||    
T  15630078 ggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 2075964 - 2075896
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttct 73  Q
    |||||||||  |||||||||||||| | |||||||||||||| |||||  || |||||||||| |||||    
T  2075964 ggttgtttgacgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttct 2075896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 15630016 - 15629833
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttggtaagttaaatattcacaatttgatttcttatcccccttttgattctttctaattgattg 104  Q
    |||||||| ||||||| | | |||||| |||||||||||||| |||  | |  |||||||||| |||||| ||||| || ||||||||      ||||||    
T  15630016 ggttgtttagtgagtctaattctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccc-ttatgattcttc-----tgattg 15629924  T
Q  105 cattgcacttctgatccccttttgattcttctgattgattgcacttctccccatattgattcttctcattgtttgcattgcacttctcttccttttt 201  Q
    ||||||||||||   ||||||||  ||||| ||||||||||||||||||||    |||||||||    ||| ||||||||||||||||  |||||||    
T  15629923 cattgcacttctc--cccctttttgttcttttgattgattgcacttctccctcctttgattctt----ttgattgcattgcacttctcccccttttt 15629833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 3775155 - 3775109
Alignment:
Q  122 ccttttgattcttctgattgattgcacttctccccatattgattcttct 170  Q
    ||||||||||||| ||||||||||  ||||||||||| |||||||||||    
T  3775155 ccttttgattcttttgattgattg--cttctccccattttgattcttct 3775109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 12177219 - 12177187
Alignment:
Q  120 ccccttttgattcttctgattgattgcacttct 152  Q
    |||||||||||| ||||||||||||||||||||    
T  12177219 ccccttttgattattctgattgattgcacttct 12177187  T

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Target: scaffold0499 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 7331 - 7292
Alignment:
Q  5 ggttgtttggtgagtcgagtgctcacaatttggttgtttg 44  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  7331 ggttgtttggtgagtcgagtgctcacaaattgattgtttg 7292  T

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