View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_84 (Length: 211)
Name: NF16757_low_84
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_84 |
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| [»] scaffold0758 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 38000047 - 38000135
Alignment:
| Q |
109 |
cttggacatggtcatatatagtagtaaaaactacannnnnnnnnnggtacccaattgctcagtcaaatacgttacagattactcctaat |
197 |
Q |
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| T |
38000047 |
cttggacatggtcatatatagtagtaaaaactacactttttttttggtacccaattgctcagtcaaatacgttacagattactcctaat |
38000135 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 37999939 - 37999984
Alignment:
| Q |
1 |
aattatttcttacataatttatttttatcccactccttcattgtgg |
46 |
Q |
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| T |
37999939 |
aattacttcttacataatttatttttatcccactccttcattgtgg |
37999984 |
T |
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Target: scaffold0758 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 342 - 300
Alignment:
| Q |
155 |
gtacccaattgctcagtcaaatacgttacagattactcctaat |
197 |
Q |
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| T |
342 |
gtacccaattgctcagtcaaataggttacagattactcctaat |
300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0758; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 499 - 454
Alignment:
| Q |
1 |
aattatttcttacataatttatttttatcccactccttcattgtgg |
46 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
499 |
aattatttcttacataatttatttttattctactccttcattgtgg |
454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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