View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16757_low_9 (Length: 613)
Name: NF16757_low_9
Description: NF16757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16757_low_9 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 11 - 613
Target Start/End: Complemental strand, 41986464 - 41985863
Alignment:
| Q |
11 |
catcatcatcctatttcctctcaaaacacagtctcttactcatcaaaccaccaacgcaacaacaaaatctccgtccctggttgattagaattacccaaaa |
110 |
Q |
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| T |
41986464 |
catcatcatcctatttcctctcaaaacacagtctcttactcatcaaaccaccaccacaacaacaaaatctccgtccctggttgattagaattacccaaaa |
41986365 |
T |
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| Q |
111 |
ttcatgtggcgaaacacaactcttccatcccctccgcccatgtgagtatccttgcccttatgattttccttacgtgcttgacttcaacaaattttcccat |
210 |
Q |
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| T |
41986364 |
ttcatgtggggaaacacaactcttccatccactccgcccatgtgagtatccttgcccttatgattttccttacgtgcttgacttcaacaaattctctcat |
41986265 |
T |
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| Q |
211 |
gtcgtcca-ttgggaacctccttcatcatggaagaagaaccagaaccgaccgagtcacaactgtgcatatggaactgctccaggagagatttgaattcca |
309 |
Q |
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| T |
41986264 |
gtcgtccatttgggaacctccttcatcatggaagaagaaccagaaccgaccgagtcacaactgtgc--atggaactgctccaggagagatttgaattcca |
41986167 |
T |
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| Q |
310 |
ttacttgaacttacaagatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaatgggaataaaggttgttgctgtcacgtgccat |
409 |
Q |
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| T |
41986166 |
ttacttgaacttacaagatgaagcttttaaacatgcaatagaaaaaaaggaaatggaaaataaggcaatgggaataaaggttgttgctgtcacgtaccat |
41986067 |
T |
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| Q |
410 |
gggaaaaatcctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgttggacgccgatcccttgcatgtcaa |
509 |
Q |
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| T |
41986066 |
gggaaaaatcctctcgctcttgtcacattgaactgtgcctgccatccgctactgttccattgccgcaaagagtgttggacgccgatcccttgcgtgtcaa |
41985967 |
T |
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| Q |
510 |
cgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggaccggactatagtgtcgagttatt |
609 |
Q |
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| T |
41985966 |
cgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttggaccggactatagtgtcgagttatt |
41985867 |
T |
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| Q |
610 |
ggct |
613 |
Q |
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| T |
41985866 |
ggct |
41985863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 291 - 610
Target Start/End: Original strand, 13170240 - 13170565
Alignment:
| Q |
291 |
aggagagatttgaattccattacttgaacttacaagatgaagcttttaaacatgcaatnnnnnnnnnggaaatggaaaataaggcaatgggaataaaggt |
390 |
Q |
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| T |
13170240 |
aggatagatttaaattccgttacttgaacttactagatgaagcttttgaacatgcagcagaaaaacagaaaatggaaaataaggcaaggggaataaaggt |
13170339 |
T |
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| Q |
391 |
tgttgctgtcacgtgccatgggaaaaatcctctcgctcttgtcacattgaactgtgcctg------ccatccgctactgttccattgccgcaaagagtgt |
484 |
Q |
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| T |
13170340 |
tgttgctgtcatgtgtcatgggaaaaatcctctcgctcttagcacattgaatggtcacggtcagggccatccactactgttccattgccgcgaagagcgt |
13170439 |
T |
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| Q |
485 |
tggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgcttttg |
584 |
Q |
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| T |
13170440 |
tggacgcctatcccctgcatgtaaacgaactttttagatatctgcatgtttaaagatcggttttgtgcagtcaataaaattggtcggacagttgcttttg |
13170539 |
T |
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| Q |
585 |
gaccggactatagtgtcgagttattg |
610 |
Q |
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| T |
13170540 |
gaccgggcgatagtgttgagttattg |
13170565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 44688182 - 44688249
Alignment:
| Q |
79 |
ctccgtccctggttgattagaattacccaaaattcatgtggcgaaacacaactcttccatcccctccg |
146 |
Q |
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| T |
44688182 |
ctccgtccttggttgattagaattaccaaaaactcacgcggagaaacacaactcttccacccactccg |
44688249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 484 - 613
Target Start/End: Complemental strand, 18991562 - 18991433
Alignment:
| Q |
484 |
ttggacgccgatcccttgcatgtcaacgtactttctagacatctgcgtgtttaaagaccggttttgtgcagttaataaaattggcaggacagttgctttt |
583 |
Q |
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| T |
18991562 |
ttggacgttgatcccatgcatgtcaacgtactttctagacatctgcgtgtttaaagagcggttttatgcggttaataaaattggtaggacagttgcgttt |
18991463 |
T |
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| Q |
584 |
ggaccggactatagtgtcgagttattggct |
613 |
Q |
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| T |
18991462 |
ggattggactatagtgttgagttagtggct |
18991433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 424
Target Start/End: Original strand, 2926346 - 2926385
Alignment:
| Q |
385 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctc |
424 |
Q |
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| T |
2926346 |
aaaggttgttgttgtcacgtgccatgggaaaaaccctctc |
2926385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 425
Target Start/End: Complemental strand, 7041946 - 7041904
Alignment:
| Q |
383 |
ataaaggttgttgctgtcacgtgccatgggaaaaatcctctcg |
425 |
Q |
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| T |
7041946 |
ataaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg |
7041904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 425
Target Start/End: Complemental strand, 9171274 - 9171234
Alignment:
| Q |
385 |
aaaggttgttgctgtcacgtgccatgggaaaaatcctctcg |
425 |
Q |
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| T |
9171274 |
aaaggtcgttgctgtcacgtgccatggaaaaaaacctctcg |
9171234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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