View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_high_10 (Length: 495)

Name: NF16758_high_10
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_high_10
NF16758_high_10
[»] chr7 (5 HSPs)
chr7 (19-483)||(10597060-10597543)
chr7 (372-429)||(5677996-5678053)
chr7 (372-429)||(5703048-5703105)
chr7 (296-336)||(13159368-13159408)
chr7 (376-420)||(31000208-31000252)
[»] chr5 (2 HSPs)
chr5 (238-388)||(18925678-18925824)
chr5 (289-421)||(30808584-30808712)
[»] chr4 (3 HSPs)
chr4 (130-172)||(24828039-24828081)
chr4 (347-417)||(11672890-11672960)
chr4 (292-333)||(42479540-42479581)
[»] chr6 (1 HSPs)
chr6 (385-446)||(2837194-2837255)
[»] chr3 (5 HSPs)
chr3 (295-336)||(9007832-9007873)
chr3 (369-421)||(11364157-11364209)
chr3 (369-421)||(11376888-11376940)
chr3 (385-417)||(26620430-26620462)
chr3 (174-218)||(42359603-42359647)
[»] chr1 (1 HSPs)
chr1 (299-336)||(34273085-34273122)
[»] chr2 (1 HSPs)
chr2 (349-437)||(22996939-22997027)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 10597060 - 10597543
Alignment:
Q  19 gaagtaaatatatattatcaaaagagataaatagaaagggtatgtagcatgcatgaaaattttgtatgactaact-------------------caaacc 99  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                   ||||||    
T  10597060 gaagtaaatatatattatcaaaagagataaatagaaagggtaagtagcatgcatgaaaattttgtatgactaactcaaacaatattatgaaactcaaacc 10597159  T
Q  100 aatcaacaactagacaatatcatgtctttagcaaaatccacatgttaatttaaatttgaaacgaaattagtttatgatatgtccggtgaagattagagaa 199  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597160 aattaacaactagacaatatcatgtctttagcaaaatccacaagttaatttaaatttgaaacgaaattagtttatgatatgtccggtgaagattagagaa 10597259  T
Q  200 atgtagtggtcattctctgggaactgtgaatgatgtctcggtggttcacggtgctccggtgtggttgagtgtaagcttcgtcaccggatgagaatggtgc 299  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597260 atgtagtggtcgttctctgggaactgtgaatgatgtctcggtggttcacggtgctccggtgtggttgagtgtaagcttcgtcaccggatgagaatggtgc 10597359  T
Q  300 ctgcaagcacgttaactctccaatgctcaagtcagtacatgagaaagagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtaccttgagcgtga 399  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597360 ctgcaagcacgttaacactccaatgctcaagtcagtacatgagaaagagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtaccttgagcgtga 10597459  T
Q  400 cactgagtcacgcttatatagctgaggaggacgataattgtctccctattatgcggcgtgaatcttggaagcagttagagatga 483  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10597460 cgctgagtcacgcttatatagctgaggaggacgataattgtctccctattatgcggcatgaatcttggaagcagttagagatga 10597543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 5678053 - 5677996
Alignment:
Q  372 ggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagctgaggagg 429  Q
    ||||||||| | ||||||||||  ||||| |||||||||| ||||||||||| |||||    
T  5678053 ggtgaatgagattgtaccttgactgtgacgctgagtcacggttatatagctgcggagg 5677996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Complemental strand, 5703105 - 5703048
Alignment:
Q  372 ggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagctgaggagg 429  Q
    ||||||||| | ||||||||||  ||||| |||||||||| ||||||||||| |||||    
T  5703105 ggtgaatgagattgtaccttgactgtgacgctgagtcacggttatatagctgcggagg 5703048  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 13159368 - 13159408
Alignment:
Q  296 gtgcctgcaagcacgttaactctccaatgctcaagtcagta 336  Q
    ||||||||| |||||||||| ||||||||||||| ||||||    
T  13159368 gtgcctgcaggcacgttaacactccaatgctcaaatcagta 13159408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 31000208 - 31000252
Alignment:
Q  376 aatgaaagtgtaccttgagcgtgacactgagtcacgcttatatag 420  Q
    ||||||||||||| ||||| ||||| ||||||||| |||||||||    
T  31000208 aatgaaagtgtacattgagggtgacgctgagtcacccttatatag 31000252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 388
Target Start/End: Complemental strand, 18925824 - 18925678
Alignment:
Q  238 cggtggttcacggtgctccggtgtggttgagtgtaagcttcgtcaccggatgagaatggtgcctgcaagcacgttaactctccaatgctcaagtcagtac 337  Q
    ||||||||||||||||||||||||||  ||| | ||| ||| |   |||| ||||||||||| |||| | |||||||| ||||||  ||||||||||||     
T  18925824 cggtggttcacggtgctccggtgtggaggagagcaagtttcataggcggaggagaatggtgcttgcatgaacgttaacactccaacactcaagtcagta- 18925726  T
Q  338 atgagaaagagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtac 388  Q
       || |||| ||||||||||||||||||| |||  |||||||||||||||    
T  18925725 ---agtaagaaaggtggattgtgtgcgaaaattgaatgaatgaaagtgtac 18925678  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 421
Target Start/End: Complemental strand, 30808712 - 30808584
Alignment:
Q  289 gagaatggtgcctgcaagcacgttaactctccaatgctcaagtcagtacatgagaaagagaggtggattgtgtgcgaaatttgggtgaatgaaagtgtac 388  Q
    ||||||||||||||||  ||||||| | ||||||  |||||||| ||  ||| |||  |||||||||||||||| ||||  ||||||||| ||||||||     
T  30808712 gagaatggtgcctgcagacacgttagcactccaacactcaagtcggt--atgtgaa--agaggtggattgtgtgtgaaaactgggtgaataaaagtgtat 30808617  T
Q  389 cttgagcgtgacactgagtcacgcttatatagc 421  Q
    |||||||||||  |||||||| |||||||||||    
T  30808616 cttgagcgtgatgctgagtcatgcttatatagc 30808584  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 24828039 - 24828081
Alignment:
Q  130 gcaaaatccacatgttaatttaaatttgaaacgaaattagttt 172  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  24828039 gcaaaatccatatgttaatttaaatttgaaacgaaattagttt 24828081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 11672890 - 11672960
Alignment:
Q  347 agaggtggattgtgtgcgaaatttgggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttata 417  Q
    ||||||||| ||||||| ||| |||| | ||||||||||||| |||||| ||| | || ||||||||||||    
T  11672890 agaggtggaatgtgtgcaaaaattggataaatgaaagtgtactttgagcatgatattgggtcacgcttata 11672960  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 42479581 - 42479540
Alignment:
Q  292 aatggtgcctgcaagcacgttaactctccaatgctcaagtca 333  Q
    |||||||| ||||||||||||||| |||||| ||||||||||    
T  42479581 aatggtgcatgcaagcacgttaacactccaacgctcaagtca 42479540  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 2837255 - 2837194
Alignment:
Q  385 gtaccttgagcgtgacactgagtcacgcttatatagctgaggaggacgataattgtctccct 446  Q
    |||||||||| ||||||||||||  |||||||||||  |||||||  ||| |||||||||||    
T  2837255 gtaccttgagtgtgacactgagttgcgcttatataggcgaggaggttgatgattgtctccct 2837194  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 9007873 - 9007832
Alignment:
Q  295 ggtgcctgcaagcacgttaactctccaatgctcaagtcagta 336  Q
    |||||||||| |||||||||| |||||| |||||||||||||    
T  9007873 ggtgcctgcaggcacgttaacactccaacgctcaagtcagta 9007832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 11364157 - 11364209
Alignment:
Q  369 ttgggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagc 421  Q
    ||||||||||||||||||| |||| | |||||  ||||| |||||||||||||    
T  11364157 ttgggtgaatgaaagtgtaacttgtgtgtgacgttgagtaacgcttatatagc 11364209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 421
Target Start/End: Original strand, 11376888 - 11376940
Alignment:
Q  369 ttgggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagc 421  Q
    |||||| |||||||||||| |||||| |||||  ||||| |||||||||||||    
T  11376888 ttgggtaaatgaaagtgtaacttgagtgtgacgttgagtaacgcttatatagc 11376940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 417
Target Start/End: Complemental strand, 26620462 - 26620430
Alignment:
Q  385 gtaccttgagcgtgacactgagtcacgcttata 417  Q
    |||||||||||||||||||||||||| ||||||    
T  26620462 gtaccttgagcgtgacactgagtcactcttata 26620430  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 42359647 - 42359603
Alignment:
Q  174 tgatatgtccggtgaagattagagaaatgtagtggtcattctctg 218  Q
    |||| |||||| ||||||||||||||||||||||||  |||||||    
T  42359647 tgatctgtccgttgaagattagagaaatgtagtggtggttctctg 42359603  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 34273085 - 34273122
Alignment:
Q  299 cctgcaagcacgttaactctccaatgctcaagtcagta 336  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  34273085 cctgcaagcacgttagcactccaatgctcaagtcagta 34273122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 437
Target Start/End: Original strand, 22996939 - 22997027
Alignment:
Q  349 aggtggattgtgtgcgaaatttgggtgaatgaaagtgtaccttgagcgtgacactgagtcacgcttatatagctgaggaggacgataat 437  Q
    ||||| |||||||||||||  ||||| ||||| |  |||| |||||||| ||||  ||||| ||||||||||| || |||| |||||||    
T  22996939 aggtgtattgtgtgcgaaaaatgggttaatgagaaagtacattgagcgtaacacatagtcatgcttatatagccgaagaggtcgataat 22997027  T

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