View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_high_12 (Length: 492)
Name: NF16758_high_12
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 46763825 - 46763362
Alignment:
| Q |
19 |
aaaaccttatacttgtagtccctccttagagactaaaatcatgcagttttgtaatttgtagagactcagaagtgtgagtagggactaaaagcagaatttg |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763825 |
aaaaccttatacttgtagtccctctttagagactaaaatcatgcagttttgtaatttgtagagactcagaagtgtgagtagggactaaaagcagaatttg |
46763726 |
T |
|
| Q |
119 |
agataattatatgaactaaaaacatatttaacggaacaattattgccaatttcgggagaagactataaatgtcgtcaagcaacaattcttacccaagaac |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763725 |
agataattatatgaactaaaaacatatttaaccgaacaattattgccaatttcgggagaagactataaatgtcgtcaagcaacaattcttacccaagaac |
46763626 |
T |
|
| Q |
219 |
ataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgttgctacaaaaatgctg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763625 |
ataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgttgctacaaaaatgctg |
46763526 |
T |
|
| Q |
319 |
ctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttggtaaaattgaagtaggatacctatagttctgcacatcgataatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763525 |
ctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttggtaaaattgaagtaggatacctatagttctgcacatcgataatt |
46763426 |
T |
|
| Q |
419 |
cgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctg |
482 |
Q |
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| T |
46763425 |
cgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctg |
46763362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 299
Target Start/End: Complemental strand, 31829412 - 31829319
Alignment:
| Q |
206 |
cttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattcca |
299 |
Q |
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||||||| ||||||||||| ||||| ||||| || | |||||||||||| || | | | |||| ||| || || |||| ||||||||||||||| |
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| T |
31829412 |
cttaccctagaacataaatatcagcaggaggagatgtatgaagccaatcttccagatttaaataactcggaggagatcgtccagctacattcca |
31829319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 391 - 482
Target Start/End: Complemental strand, 1083826 - 1083735
Alignment:
| Q |
391 |
atacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctg |
482 |
Q |
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|||||||||||| || ||||| ||||||| |||||||||||| ||||| || |||||||||||||||||| | |||||||||| ||||||| |
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| T |
1083826 |
atacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctcgcctaacctgactcgagttcctgctaaatttctctg |
1083735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 322
Target Start/End: Complemental strand, 1084013 - 1083899
Alignment:
| Q |
208 |
tacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgttgcta |
307 |
Q |
| |
|
||||||||||||||||| || || || ||||||| ||||||||||| | || ||||||||||| || ||||||||||| || ||||||||||| | | |
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| T |
1084013 |
tacccaagaacataaatatctgcaggcggtgaggcgtgaagccaatcgtttatgctcaaattactcggcggggatcttccggccacattccatgtaccaa |
1083914 |
T |
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| Q |
308 |
caaaaatgctgctca |
322 |
Q |
| |
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||||||||||||||| |
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| T |
1083913 |
caaaaatgctgctca |
1083899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 28315234 - 28315283
Alignment:
| Q |
101 |
gactaaaagcagaatttgagataattatatgaactaaaaacatatttaac |
150 |
Q |
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||||||||||| ||||||| ||| ||||||| ||||||||||| |||||| |
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| T |
28315234 |
gactaaaagcaaaatttgatatatttatatggactaaaaacatttttaac |
28315283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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