View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_high_15 (Length: 463)

Name: NF16758_high_15
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_high_15
NF16758_high_15
[»] chr1 (1 HSPs)
chr1 (17-431)||(52214603-52215023)
[»] chr6 (3 HSPs)
chr6 (17-406)||(4222973-4223363)
chr6 (17-303)||(4161457-4161743)
chr6 (403-445)||(4222914-4222956)
[»] chr3 (1 HSPs)
chr3 (23-189)||(2220689-2220855)
[»] chr7 (19 HSPs)
chr7 (20-189)||(38283870-38284039)
chr7 (20-182)||(38155443-38155605)
chr7 (237-304)||(35079108-35079175)
chr7 (44-159)||(38288049-38288164)
chr7 (237-304)||(35070410-35070477)
chr7 (237-304)||(35093198-35093265)
chr7 (237-304)||(35096446-35096513)
chr7 (42-189)||(36741575-36741722)
chr7 (40-182)||(38191922-38192064)
chr7 (237-304)||(42800940-42801007)
chr7 (237-303)||(36741461-36741527)
chr7 (238-304)||(42835610-42835676)
chr7 (237-299)||(43029927-43029989)
chr7 (44-91)||(42800693-42800740)
chr7 (231-304)||(34150994-34151067)
chr7 (231-304)||(34176057-34176130)
chr7 (44-181)||(38146731-38146868)
chr7 (43-175)||(35096614-35096746)
chr7 (43-91)||(42835364-42835412)
[»] chr5 (1 HSPs)
chr5 (237-304)||(9666653-9666720)
[»] chr4 (1 HSPs)
chr4 (57-188)||(21362333-21362464)
[»] chr2 (4 HSPs)
chr2 (57-188)||(23906105-23906236)
chr2 (20-144)||(12408046-12408170)
chr2 (20-144)||(12420106-12420230)
chr2 (149-189)||(12407223-12407263)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 52215023 - 52214603
Alignment:
Q  17 cataggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatccc 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||    
T  52215023 cataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggatgtgattgagttagccc 52214924  T
Q  117 gtcatctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagattgactaaaacctcaaaata 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52214923 gtcatctactgaggaatgtgaattcgctcaagcaaattacttttagttcttgtgacaaattctatataggtgccaaaagattgactaaaacctcaaaata 52214824  T
Q  217 ttgttgctatgatcataatcttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttattttcnnnnnnnggta 316  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||  || ||||||| |||||||||||||||         ||||    
T  52214823 ttgttgctatgatcgtaaccttattcatgaggtgcttaaagatgaagtagatgaacaatcccaacttataattttgtagtgttatttattttttttggta 52214724  T
Q  317 ataaaagagggc------tgacgccccagtgttattttatttattatactgttattatcagttaattcattgccataaacattgtataattcatttacta 410  Q
    ||||||||||||      | || ||||| |||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||    
T  52214723 ataaaagagggctcacagtcacaccccaatgttattttatttattatactgttattatcaaataatttattgcgataaacattgtataattcatttacta 52214624  T
Q  411 tctttttagttattttattta 431  Q
    |||||||||||||||||||||    
T  52214623 tctttttagttattttattta 52214603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 4223363 - 4222973
Alignment:
Q  17 cataggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatccc 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||     
T  4223363 cataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggacgtgattgagttagcca 4223264  T
Q  117 gtcatctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagattgactaaaacctcaaaata 216  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4223263 gtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagatggactaaaacctcaaaata 4223164  T
Q  217 ttgttgctatgatcataatcttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttattt-tcnnnnnnnggt 315  Q
    |||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||| || ||||||| ||||||| ||||||| |        |||    
T  4223163 ttgttgctatgatcgtaaccttattcatgaggtgcttacagatgaagtagatgaacaatgccaacttataattttgtagggttatttatttatttttggt 4223064  T
Q  316 aataaaagagggctgacgccccagtgttattttatttattatactgttattatcagttaattcattgccataaacattgtataattcattt 406  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  4223063 aataaaagagggctgatgccccagtgttattttatttattatactgttatcatcagttaattcattgcgataaacattgtataatttattt 4222973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 4161743 - 4161457
Alignment:
Q  17 cataggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatccc 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||     
T  4161743 cataggcaaagaagagaacatggaaagttttttcataattatttgaaatatgtcgagttacgtggttgtgtttgcaccatggacgtgattgagttagcca 4161644  T
Q  117 gtcatctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagattgactaaaacctcaaaata 216  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4161643 gtcatctattgaggaatgtgaattcgctcaagcaaattactttcagttcttgtgacaaattctatataggtgccgaaagatggactaaaacctcaaaata 4161544  T
Q  217 ttgttgctatgatcataatcttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttattt 303  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||||    
T  4161543 ttgttgctatgatggtaaccttattcatgaggtgcttaaagatgaagtagatgaacaatgccaacttataattttgtagtgttattt 4161457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 4222956 - 4222914
Alignment:
Q  403 atttactatctttttagttattttatttataatggcgagaact 445  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  4222956 atttactatctttttagttattttaattataatggcgagaact 4222914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 2220855 - 2220689
Alignment:
Q  23 caaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatc 122  Q
    |||||||||||| ||| |  ||||| |||||||||||||||||||||||||||| | |||||| | ||||||||  |||| ||||| ||  || |||| |    
T  2220855 caaagaagagaatatgcagggttttctcataattatttgaaatatgttgagttacgaggttgtatgtgcaccataaatgtaattgaattggccagtcacc 2220756  T
Q  123 tactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgc 189  Q
    || ||||||||||||||||||| || |||||||||||||||||| |||| |||||||| | ||||||    
T  2220755 tattgaggaatgtgaattcacttaaacaaattactttcagttctcgtgaaaaattctacagaggtgc 2220689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 38284039 - 38283870
Alignment:
Q  20 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 119  Q
    ||||||||||||||| ||| |  ||||| ||||||| ||||||||||||||||||||  ||| ||| | ||| ||||  |||| ||||||||  |  |||    
T  38284039 aggcaaagaagagaatatgcagggttttctcataatgatttgaaatatgttgagttacatggctgtatgtgcgccataaatgtaattgagttggctagtc 38283940  T
Q  120 atctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctatataggtgc 189  Q
    |  || ||||||||||||||||||| || |||||||| |||||| || |||| |||||||| | ||||||    
T  38283939 acatattgaggaatgtgaattcacttaaacaaattacattcagtcctggtgaaaaattctacagaggtgc 38283870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 38155605 - 38155443
Alignment:
Q  20 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 119  Q
    |||||||||||| | |||| ||| |||| ||||||| | ||||||||||| || ||  |||||||||||||| ||||  || | ||||||||| |  |||    
T  38155605 aggcaaagaagaaatcatgcaaaattttgtcataatgagttgaaatatgtagactttcgtggttgtgtttgctccataaatataattgagttagctagtc 38155506  T
Q  120 atctactgaggaatgtgaattcactcaagcaaattactttcagttcttgtgacaaattctata 182  Q
    | ||| ||||||| |  ||||| || ||||||||||||||  ||||| |||||||||||||||    
T  38155505 agctattgaggaaagcaaattctcttaagcaaattacttttggttctagtgacaaattctata 38155443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 35079175 - 35079108
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||||||||| |||||||||||||| || |||||||||| || ||||||| ||||||||||||||||    
T  35079175 ttattcatgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgttatttt 35079108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 44 - 159
Target Start/End: Original strand, 38288049 - 38288164
Alignment:
Q  44 ttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcac 143  Q
    |||||||| ||| |||||| |||  | |||||| ||||||||||||| |||||| | || ||||||||| |  |||||||| |||||||||||||||| |    
T  38288049 ttttttcacaatgatttgagatacatggagttacgtggttgtgtttgtaccatgaaagtaattgagttagcaagtcatctattgaggaatgtgaattcgc 38288148  T
Q  144 tcaagcaaattacttt 159  Q
    | || |||||||||||    
T  38288149 ttaatcaaattacttt 38288164  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 35070477 - 35070410
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||||| ||| |||||||||||||| || |||||||||| || ||||||| ||||||||||||||||    
T  35070477 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgttatttt 35070410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 35093265 - 35093198
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||||||||| |||||| ||||||| || |||||||||| || ||||||| ||||||||||||||||    
T  35093265 ttattcatgagatgcttatagatgaagtaaatgaacaatgtcagcttataattttgtagtgttatttt 35093198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 35096513 - 35096446
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||||| ||| |||||||||||||| || |||||||||| || ||||||| ||||||||||||||||    
T  35096513 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgttatttt 35096446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 36741722 - 36741575
Alignment:
Q  42 agttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattc 141  Q
    |||||| ||||||| ||||||||||||| |||||  |||||||||||| | |   |||||| ||||| ||| |  |||| ||| |||||||||  |||||    
T  36741722 agttttctcataatgatttgaaatatgtggagttttgtggttgtgttttctctgcggatgttattgaattagcaagtcaactattgaggaatgcaaattc 36741623  T
Q  142 actcaagcaaattactttcagttcttgtgacaaattctatataggtgc 189  Q
     || ||  |||| ||||||||||||  | |||||||||||||||||||    
T  36741622 gcttaacaaaatgactttcagttctcttcacaaattctatataggtgc 36741575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 182
Target Start/End: Complemental strand, 38192064 - 38191922
Alignment:
Q  40 aaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaat 139  Q
    |||||||||||||||| |||||||||||||||||||| |||||||   |||| |||   |||| ||||||||| |  ||||  |  | ||||| |  |||    
T  38192064 aaagttttttcataatgatttgaaatatgttgagttacgtggttgcacttgctccaaaaatgtaattgagttaactagtcacatgttaaggaaagcaaat 38191965  T
Q  140 tcactcaagcaaattactttcagttcttgtgacaaattctata 182  Q
    ||||| ||| ||||||| ||||||||| || ||||||||||||    
T  38191964 tcacttaagaaaattacattcagttctcgttacaaattctata 38191922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 42800940 - 42801007
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||||| ||| |||||||||||||| || |||||||||| || ||||||| |||||| |||||||||    
T  42800940 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccaccttataattttgtaatgttatttt 42801007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 36741527 - 36741461
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttattt 303  Q
    ||||| ||||| |||||||||||||| || || ||||||| || ||||||| |||||||||||||||    
T  36741527 ttatttatgagatgcttaaagatgaagtaaataaacaatgtcaacttataattttgtagtgttattt 36741461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 42835610 - 42835676
Alignment:
Q  238 tattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    |||||| ||| |||||||||||||| || |||||||||| || ||||||| ||||||||||| ||||    
T  42835610 tattcacgagatgcttaaagatgaagtaaatgaacaatgccaccttataattttgtagtgttgtttt 42835676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 43029927 - 43029989
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgtt 299  Q
    ||||||| ||| |||||||||||||| || ||||||||||||| ||||||| ||| |||||||    
T  43029927 ttattcacgagatgcttaaagatgaagtaaatgaacaatgacagcttataattttatagtgtt 43029989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 42800693 - 42800740
Alignment:
Q  44 ttttttcataattatttgaaatatgttgagttaagtggttgtgtttgc 91  Q
    |||||||||||| ||||||||||||| |||||  ||||||||||||||    
T  42800693 ttttttcataatgatttgaaatatgtggagtttcgtggttgtgtttgc 42800740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 34150994 - 34151067
Alignment:
Q  231 ataatcttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||| ||||| | ||| |||||||||||||| || |||||||||| || ||||||| |||||| ||| |||||    
T  34150994 ataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgtaatgtcatttt 34151067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 34176130 - 34176057
Alignment:
Q  231 ataatcttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||| ||||| | ||| |||||||||||||| || |||||||||| || ||||||| |||||| ||| |||||    
T  34176130 ataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgtaatgtcatttt 34176057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 38146868 - 38146731
Alignment:
Q  44 ttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcac 143  Q
    |||||||||||| | ||||||||||| |||||| |||||||| ||||  ||||  |||| ||||||||| |  |  ||||| | || || |  |||| ||    
T  38146868 ttttttcataatgacttgaaatatgtagagttatgtggttgtatttgttccataaatgtaattgagttagctagcaatctattaagaaacgcaaatttac 38146769  T
Q  144 tcaagcaaattactttcagttcttgtgacaaattctat 181  Q
    | || ||||||||||| |||||| |||| |||||||||    
T  38146768 ttaaacaaattacttttagttctcgtgaaaaattctat 38146731  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 35096746 - 35096614
Alignment:
Q  43 gttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattca 142  Q
    ||||| ||||||  |||||||||||||||| ||  ||||||||||| || | ||  |||| ||||||||| |  ||||  || |||||| ||  ||||||    
T  35096746 gttttctcataacgatttgaaatatgttgaattccgtggttgtgttggctctataaatgttattgagttagctagtcacttattgaggagtgcaaattca 35096647  T
Q  143 ctcaagcaaattactttcagttcttgtgacaaa 175  Q
    || | | |||| |||||||||||| ||||||||    
T  35096646 cttaggaaaatgactttcagttctcgtgacaaa 35096614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 42835364 - 42835412
Alignment:
Q  43 gttttttcataattatttgaaatatgttgagttaagtggttgtgtttgc 91  Q
    ||||||||||||| ||||||||||||| || ||  ||||||||||||||    
T  42835364 gttttttcataatgatttgaaatatgtggatttttgtggttgtgtttgc 42835412  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 9666653 - 9666720
Alignment:
Q  237 ttattcatgaggtgcttaaagatgaaatagatgaacaatgacatcttataactttgtagtgttatttt 304  Q
    ||||||||||| || ||||||||||| || |||||||||| || ||||||| ||||||||||||||||    
T  9666653 ttattcatgagatgtttaaagatgaagtaaatgaacaatgccaacttataattttgtagtgttatttt 9666720  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 21362464 - 21362333
Alignment:
Q  57 atttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcactcaagcaaattac 156  Q
    ||||||||||||||||| || |||| |  |||||||| ||  |||||||||| ||  |  |||| ||| |||| ||||||||||| || |||||||||||    
T  21362464 atttgaaatatgttgagctatgtggatcagtttgcactataaatgtgattgacttggctagtcacctaatgagaaatgtgaattcgcttaagcaaattac 21362365  T
Q  157 tttcagttcttgtgacaaattctatataggtg 188  Q
    ||| | || |||||||||||| |||| |||||    
T  21362364 ttttaatttttgtgacaaattttatagaggtg 21362333  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 23906105 - 23906236
Alignment:
Q  57 atttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtcatctactgaggaatgtgaattcactcaagcaaattac 156  Q
    ||||||||||||||||| || |||| |  |||||||| ||  |||||||||| ||  |  |||| ||| |||| ||||||||||| || |||||||||||    
T  23906105 atttgaaatatgttgagctatgtggatcagtttgcactataaatgtgattgacttggctagtcacctaatgagaaatgtgaattcgcttaagcaaattac 23906204  T
Q  157 tttcagttcttgtgacaaattctatataggtg 188  Q
    ||| | || |||||||||||| |||| |||||    
T  23906205 ttttaatttttgtgacaaattttatagaggtg 23906236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 12408170 - 12408046
Alignment:
Q  20 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 119  Q
    ||||||||||||||| ||| |  | ||| |||||||  |||||||||||||||| || |||| | ||||||||||||  |||  ||||||||| || ||     
T  12408170 aggcaaagaagagaatatgcagggatttctcataatgctttgaaatatgttgagctacgtggctctgtttgcaccataaatgcaattgagttagccagta 12408071  T
Q  120 atctactgaggaatgtgaattcact 144  Q
    |  || |||||||||||||||||||    
T  12408070 acatattgaggaatgtgaattcact 12408046  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 12420230 - 12420106
Alignment:
Q  20 aggcaaagaagagaacatgtaaagttttttcataattatttgaaatatgttgagttaagtggttgtgtttgcaccatggatgtgattgagttatcccgtc 119  Q
    ||||||||||||||| ||| |  | ||| |||||||  |||||||||||||||| || |||| | ||||||||||||  |||  ||||||||| || ||     
T  12420230 aggcaaagaagagaatatgcagggatttctcataatgctttgaaatatgttgagctacgtggctctgtttgcaccataaatgcaattgagttagccagta 12420131  T
Q  120 atctactgaggaatgtgaattcact 144  Q
    |  || |||||||||||||||||||    
T  12420130 acatattgaggaatgtgaattcact 12420106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 12407263 - 12407223
Alignment:
Q  149 caaattactttcagttcttgtgacaaattctatataggtgc 189  Q
    ||||||||||||| |||| |||||||||| |||||||||||    
T  12407263 caaattactttcacttctggtgacaaattttatataggtgc 12407223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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