View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_high_16 (Length: 446)
Name: NF16758_high_16
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 7 - 446
Target Start/End: Original strand, 6475393 - 6475842
Alignment:
| Q |
7 |
tagataatactcattcgtggtaaatttaactccaatcatttagactttaatgttaacatatttgactcaaagcttcttcnnnnnnn------catatttg |
100 |
Q |
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| T |
6475393 |
tagatcatactcattcgtggtaaatttaactccaatcatttagactttaatgttaacatatttgactcaaagcttcttaaaaaaaaaaaaaacatatttg |
6475492 |
T |
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| Q |
101 |
actcaaagcataagttgaaacttccgccattagtattaggatcta-tttgtgggcactctatatgtatttttatactctatttatgaactttgagatcta |
199 |
Q |
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| T |
6475493 |
actcaaatgataagttgaaacttccgccattagtattaggatcttgtttgtgggcactctatatgtatttttatactctatttatgaactttgaggtcta |
6475592 |
T |
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| Q |
200 |
cctttaacgtcagcgtgacttaactcacctaaacttttatgtata---aaaagtagctagtttgtaatgatnnnnnnnnnnnnttgacaagcaaactaca |
296 |
Q |
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| T |
6475593 |
cttttaacgctagcgtagcttaactcacctaaacttttatgtatttttaaaaatagctagtttgtaatgataaaaacaaaaaattgacaagcaaactgca |
6475692 |
T |
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| Q |
297 |
ctatttcaatcaaagactttttaatggttttgtttcttctaaaatccaaaagtatataaattcagattttacatcgagtaagacaaacagatcgagtaaa |
396 |
Q |
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| T |
6475693 |
ctatttcaatcaaagactttttattggttttgtttcttctaaaatccaaaagtatataaattcagattttacaccgagtaagacaaacagatcgagtaaa |
6475792 |
T |
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| Q |
397 |
ccataccaccatcatataaccaccaacaaacaactaacacgactagtagt |
446 |
Q |
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| T |
6475793 |
ccataccaccatcatataaccaccaacaaacaactaacaagactagtagt |
6475842 |
T |
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