View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_high_28 (Length: 360)
Name: NF16758_high_28
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 51102323 - 51102492
Alignment:
| Q |
12 |
aaattatactattaatggaaaactcaaagcttaatcaaaacattgtcatgcatttaaacaataacttaaatatcacacaaagccaatctttcaagttcac |
111 |
Q |
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| T |
51102323 |
aaattatactattaatgggaaactcaaagcttaatcaaaacattgtcatgcatttaaacaataaattaaatatcacacaaagccaatctttcaagttcac |
51102422 |
T |
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| Q |
112 |
gaattaactaataaagttataagctgtgcatctccaccctccatagctccatgaaaatcgaccctttatt |
181 |
Q |
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| T |
51102423 |
gaattaactaataaagttataagctgtgcatctccaccctccatagctccatgaacatcgaccctttatt |
51102492 |
T |
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Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 181 - 360
Target Start/End: Original strand, 51102574 - 51102751
Alignment:
| Q |
181 |
tatgcctttatttcttaagttacctagtgtaagacaggcactggataatatggaagttgaatttagttgaatgacttgatgaaaaaatggagnnnnnnnn |
280 |
Q |
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| T |
51102574 |
tatgcctttatttcttaagttacctagtgtaagacaggcacgggataatatggaagttgaatttagttgaatgacttgatgaaaaaatggag-aaaaaaa |
51102672 |
T |
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| Q |
281 |
ncctatttgataatggtgagcaaacgtagctatcatcattattaggnnnnnnnncagggtagctttgaatttagcatttc |
360 |
Q |
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| T |
51102673 |
acctatttgataatggtgagcaaacgtagttatcatcattattagg-aaaataacacggtagctttgaatttagcatttc |
51102751 |
T |
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