View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_high_29 (Length: 354)
Name: NF16758_high_29
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_29 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 124927 - 125267
Alignment:
| Q |
1 |
aattagaagcaaacaaaaaatacttgttataacaacaatatattataaaccaacaacatagtttggtgaactaaaa-tcacctctttgtcgcacaccacc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
124927 |
aattagaagcaaacaaaaaatacttgttataacaacaatatattataaaccaacaacatagtttggtgaactaaaaatcacctctttgtcgcaccccacc |
125026 |
T |
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| Q |
100 |
atctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatcattgaggctgttaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125027 |
atctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatcattgaggctgttaa |
125126 |
T |
|
| Q |
200 |
ttttttggaaaggcctagccattgttgctgtaaaaaacatgttgacaatgacattttacaatgatttcacattcactttacaaaacatttnnnnnnntgc |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
125127 |
ttttttggaaaggcctagccattgttgctgtaaaaaacatgttgacaatgacattttacaatgatttcacattcactttacaaaatatttaaaaaaatgc |
125226 |
T |
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| Q |
300 |
acatgcatttcagacaataatttaagttgacatgttgaaca |
340 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
125227 |
acatgcatttcaaacaataatttaagttgacatgttgaaca |
125267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 22079870 - 22080028
Alignment:
| Q |
78 |
cacctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
177 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||| |
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| T |
22079870 |
cacctctttgtcacacaacaccatctcaatatgttgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagat |
22079969 |
T |
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| Q |
178 |
tttgaatcattgaggctgttaattttttggaaaggcctagccattgttgctgtaaaaaa |
236 |
Q |
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|| ||||||||| | | || || ||||| |||||||| ||||||||||||| |||||| |
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| T |
22079970 |
ttgaaatcattgatgttcttgatcttttgcaaaggcctggccattgttgctggaaaaaa |
22080028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 23700170 - 23700320
Alignment:
| Q |
79 |
acctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagatt |
178 |
Q |
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||||||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
23700170 |
acctctttgtcacacaacaccatctcaatatgttgtttgctctttgaattagtaacagtccacaaatcaacaactcgaacatcaattttccacagagatt |
23700269 |
T |
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| Q |
179 |
ttgaatcattgaggctgttaattttttggaaaggcctagccattgttgctg |
229 |
Q |
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| ||| |||||||| | || ||||||| |||||||||||||||||||||| |
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| T |
23700270 |
tggaaccattgaggttcttgattttttccaaaggcctagccattgttgctg |
23700320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 1522683 - 1522538
Alignment:
| Q |
78 |
cacctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
177 |
Q |
| |
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|||||||||||| |||| ||||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||||||| |||||||| || ||| |
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| T |
1522683 |
cacctctttgtcacacaacaccatctcaatatgctgtttcttctttgaatttgcaacagtccacatgtcaacaactcgaacaacaattttc--cagggat |
1522586 |
T |
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| Q |
178 |
tttgaatcattgaggctgttaattttttggaaaggcctagccattgtt |
225 |
Q |
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|| |||||||||||| | || || ||||| |||||||||||||||||| |
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| T |
1522585 |
ttggaatcattgaggttcttgatcttttgcaaaggcctagccattgtt |
1522538 |
T |
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