View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16758_high_32 (Length: 349)
Name: NF16758_high_32
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 46400651 - 46400967
Alignment:
| Q |
18 |
cagaattctatacaaatttgattatcgcttaaacgttttatctctgattcaaagaatttgtgtattcgcagtgatttctcaaggaattaatgccggagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46400651 |
cagaattctatacaaatttgattatcgcttaaacgttttatctctgattcaaagaatttgcgtattcgcagtgatttctcaaggaattaatgccggagat |
46400750 |
T |
|
| Q |
118 |
gtgaagaagcttcaggacgcagggatctttacctgcaatggcttgatgatgcacacgaagaaggtttaactctaaacactactctaattcaaagatctaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46400751 |
gtgaagaagcttcaggacgcagggatctttacctgcaatggcttgatgatgcacacgaagaaggtttaactctaaacactactctaattcgaagatctaa |
46400850 |
T |
|
| Q |
218 |
gaatgttgaattacgctgaagtttaatcacttaaataattaatgtcgttattattttttccgtagaatttgactggaatcaaaggtttatctgaggcgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46400851 |
gaatgttgaattacgctgaagtttaatcacttaaataattaatgtcgttattattttttccgtagaatttgactggaatcaaaggtttatctgaggcgaa |
46400950 |
T |
|
| Q |
318 |
ggttgataagatctgtg |
334 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46400951 |
ggttgataagatctgtg |
46400967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 18554644 - 18554823
Alignment:
| Q |
38 |
attatcgcttaaacgttttatctctgattcaaagaatttgtgtattcgcagtgatttctcaaggaattaatgccggagatgtgaagaagcttcaggacgc |
137 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18554644 |
attatcgcttaaacgttttgtctctgattcaaagaattcgcgtcttcgcagtgatttttcaaggaattaatgccggagatgtaaagaagcttcaggacgc |
18554743 |
T |
|
| Q |
138 |
agggatctttacctgcaatggcttgatgatgcacacgaagaagg-tttaactctaaacactactctaattcaaagatcta |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||| |
|
|
| T |
18554744 |
agggatctttatctgcaatggcttgatgatgcacacgaagaaggttttaactctaaacacttctctaattcgaatatcta |
18554823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 18554828 - 18554891
Alignment:
| Q |
271 |
ttttttccgtagaatttgactggaatcaaaggtttatctgaggcgaaggttgataagatctgtg |
334 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18554828 |
ttttttccgcagaatttgactggaatcacaggtttatctgaggcgaaggttgataaaatctgtg |
18554891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 11362610 - 11362685
Alignment:
| Q |
86 |
cagtgatttctcaaggaattaatgccggagatgtgaagaagcttcaggacgcagggatctttacctgcaatggctt |
161 |
Q |
| |
|
||||||||||||||| ||| | |||| |||||||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
11362610 |
cagtgatttctcaagatattgacgccgacgatgtgaagaagcttctggatgcagggatctttacctgcaatagctt |
11362685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University