View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16758_high_50 (Length: 244)
Name: NF16758_high_50
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 36675229 - 36675350
Alignment:
| Q |
104 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36675229 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36675328 |
T |
|
| Q |
204 |
aaaattaacaatactaacattt |
225 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
36675329 |
aaaaataacaatactaacattt |
36675350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 104 - 225
Target Start/End: Original strand, 36685311 - 36685432
Alignment:
| Q |
104 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaacgta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36685311 |
tccttcttgacttcaggaaatgtcatcgccggctgcatgttcttgtctccagtgtaagattatttctaaatctcttcccgcatttttcaattttaaccta |
36685410 |
T |
|
| Q |
204 |
aaaattaacaatactaacattt |
225 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
36685411 |
aaaaataacaatactaacattt |
36685432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36675130 - 36675179
Alignment:
| Q |
1 |
tactaatttgctttttaagctttcattaaaaacatatatatgtacttcaggaat |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36675130 |
tactaatttgctttttaagctttcattaaaaacatat----gtacttcaggaat |
36675179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 25991706 - 25991735
Alignment:
| Q |
196 |
ttaacgtaaaaattaacaatactaacattt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
25991706 |
ttaacgtaaaaattaacaatactaacattt |
25991735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University