View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16758_high_52 (Length: 236)
Name: NF16758_high_52
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 26230608 - 26230802
Alignment:
| Q |
18 |
atgaaattaattctctgagaaatattctcatagaaaagttgaaagacaaatgaaatattacttgatttggaagtatattacattatttaaaattgaggtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26230608 |
atgaaattaattctctgagaaatattctcatagaaaagttgaaagataaatgaaatattacttgatttggaagtatattacattatttaaaattgaggtt |
26230707 |
T |
|
| Q |
118 |
aatgagaaacaaacatgtatgaagatactttgttagatttatcatttttacattctagtcttaaagcatatgctctggttttgcttactagtaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26230708 |
aatgagaaacaaacatgtatgaagataatttgttagatttatcatttttacattctagtcttaaagcatatgctctggttttgcttactagtaca |
26230802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 26218339 - 26218529
Alignment:
| Q |
18 |
atgaaattaattctctgagaaatattctcatagaaaagttgaaagacaaatgaaatattacttgatttggaagtatattacattatttaaaattgaggtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26218339 |
atgaaattaattctctgagaaatattctcatagaaaagttgaaagacaaatgaaatattacttgatttggaagtatattacattatttaaaattgaggtt |
26218438 |
T |
|
| Q |
118 |
aatgagaaacaaacatgtatgaagatactttgttagatttatcatttttacattctagtcttaaagcatatgctctggttttgcttactagtaca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26218439 |
aatgagaaacaaacatgtatgaagatactttgt----tttatcatttttacattctagtcttaaagcatattctctggttttgcttactagtaca |
26218529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 26238135 - 26238193
Alignment:
| Q |
31 |
tctgagaaatattctcatagaaaagttgaaagacaaatgaaatattacttgatttggaa |
89 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
26238135 |
tctgagaaatactctcatagaaaagttgaaggacaaatgaaatagtactttatttggaa |
26238193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University