View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16758_high_56 (Length: 211)
Name: NF16758_high_56
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 31069055 - 31068874
Alignment:
| Q |
12 |
agagagaagaaagggagcatgagaaatgggtttatgatggttctgtggattgtaaaggaaaagttcctcttcgtactaaaactggtgtatggatagcttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
31069055 |
agagagaagaaagggagcatgagaaatgggtttatgatggttctgtggattgtaaaggcaaagttccccttcgtgctaaaactggtgtatggatagcttc |
31068956 |
T |
|
| Q |
112 |
tctctttgtcctcagtaagatatctacctgtgttcatcattattattttcttatgaagtttgcaacaattgtaaaaatatact |
194 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31068955 |
tctctttgtcctaagtaagatatctactttagttcatcact-tttttttcttatgaagtttgcaacaattgtaaaaatatact |
31068874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 31085744 - 31085583
Alignment:
| Q |
14 |
agagaagaaagggagcatgagaaatgggtttatgatggttctgtggattgtaaaggaaaagttcctcttcgtactaaaactggtgtatggatagcttctc |
113 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31085744 |
agagaagaaagtgaacaagagaaatgggtttatgatggttctgtggattgtaaaggaaaagttcctcttcgtgctaaaactggtgtatggatagcttctc |
31085645 |
T |
|
| Q |
114 |
tctttgtcctcagtaagatatctacctgtgttcatcattattattttcttatgaagtttgcaac |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
31085644 |
tctttgtcctcagtaagatatctacctgtgttcatcat--tttttttcttataaagtttgcaac |
31085583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 31059618 - 31059520
Alignment:
| Q |
35 |
aaatgggtttatgatggttctgtggattgtaaaggaaaagttcctcttcgtactaaaactggtgtatggatagcttctctctttgtcctcagtaagata |
133 |
Q |
| |
|
|||||||| |||||||||||| | |||| |||||||| ||||||||||||| || ||||||| ||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
31059618 |
aaatgggtgtatgatggttcttttgattataaaggaagagttcctcttcgtgcttccactggtgcatggaaagcttctttctttgtcatcagtaagata |
31059520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University