View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16758_high_57 (Length: 206)
Name: NF16758_high_57
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_57 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 40754839 - 40754664
Alignment:
| Q |
14 |
cataggccaagataaatatattgaaaaatgaatattcttttcatcaaccatagaatatagtcaagatcacaataattataatgtacggaaaatgaggcca |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40754839 |
cataggccaagataaataaattgaaaaatgaatattcttttcatcaaccatagaatatagtcaagatcacaataattataatgtacggaaaatgaggcca |
40754740 |
T |
|
| Q |
114 |
aggtcttggaatttgttctttgaaccttgagattgcacattcaacttagaaaatgtgaaagattagtgttgcaagg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40754739 |
aggtcttggaatttgttctttgaaccttgagactgcacattcaacttagaaaatgtgaaagattagtgttgcaagg |
40754664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University