View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16758_high_6 (Length: 636)
Name: NF16758_high_6
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 261 - 603
Target Start/End: Complemental strand, 1590652 - 1590311
Alignment:
| Q |
261 |
agagaaaatgctgttgtggtgggatataatt--gatggtaatttcttaaattaggaaccgatcaagtgatatcgatgttagaaactaaattgatagtgta |
358 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |
|
|
| T |
1590652 |
agagaaaatgctgttttggtgggatataattttgatggtaatttcttaaattaggaaccga---agtgttatcgatgttagaaactaaattgatactgta |
1590556 |
T |
|
| Q |
359 |
agtggttagttgtatatgcactgataaacattgttgttacagattcaaagatatttttgaaatatattcataatatctgagacttatttgagagcatcct |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1590555 |
agtggttagttgtatatgcactgataaacattgttgttacagattcaaagatatttttgaaatatattcataatatctgagacttatttgagagcatcct |
1590456 |
T |
|
| Q |
459 |
aaaaagtttgggatattttatctgaagttgcaaagtagcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcctcccccc |
558 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1590455 |
aaaaagtctgggatattttatctgaagttgcaaagtcgcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcctccgccc |
1590356 |
T |
|
| Q |
559 |
tcacattttcctcaaaaacaataacaattaggctaatataaatat |
603 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1590355 |
tcacattttcctcataaacaataacaattaggctaatataaatat |
1590311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 466 - 604
Target Start/End: Original strand, 1588989 - 1589129
Alignment:
| Q |
466 |
ttgggatattttatctgaagttgcaaagtagcaaaactggatcttctttgcaacatgtcttcattgtttctcaccctctattctcct-cccccctcacat |
564 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1588989 |
ttggaatagtttatctgaagttgcaaagtcccaaaactgtgtcttctttgaaacatgtcttcattgtttctcaccctctattctcctccccccctcacat |
1589088 |
T |
|
| Q |
565 |
tttcctcaaaaacaataacaattaggct-aatataaatatg |
604 |
Q |
| |
|
||| |||| ||||| ||||||||||||| |||||||||||| |
|
|
| T |
1589089 |
ttttctcacaaacattaacaattaggctaaatataaatatg |
1589129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 142 - 259
Target Start/End: Original strand, 1588841 - 1588959
Alignment:
| Q |
142 |
ttaactttaattttttgctatcttttattaatgtcgtctcgtctgtgacgatatcatttaaggattggctctc--aacattcacagtggctgcctaggag |
239 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||| |
|
|
| T |
1588841 |
ttaactttaattttttgctat-ttttattaatgtcgtttcgtcagtgacgatatcatttaaggattggttctcaaaacattcgcagtggctgccgaggag |
1588939 |
T |
|
| Q |
240 |
tattggcctttgccaacctt |
259 |
Q |
| |
|
| || ||||||||||||||| |
|
|
| T |
1588940 |
ttttagcctttgccaacctt |
1588959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 1588389 - 1588468
Alignment:
| Q |
65 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgcttatgatgattttgatgttcaactgtta |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1588389 |
aaattgcttgaagataagctttaattgctttatggggtctgaattctactgcttatgatgattttgattttcaactgtta |
1588468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 1588334 - 1588362
Alignment:
| Q |
10 |
tagattattctccttgatcatgttggtcc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1588334 |
tagattattctccttgatcatgttggtcc |
1588362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 19268252 - 19268071
Alignment:
| Q |
65 |
aaattgcttgaagataagctttaattgctttatggggtttgaattctactgctta----tgatgattttgatgttcaactgttaactttaattttttgct |
160 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
19268252 |
aaattgcttgaaaataagctttgattgctttatagggtttgaattctactgcttaattatgatggttttgatgttcaactgttaactttaattttgtgct |
19268153 |
T |
|
| Q |
161 |
atcttttattaatgtcgtctcgtctgtgac--gatatcatttaaggattggctctc--aacattcacagtggctgcctagga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||| |
|
|
| T |
19268152 |
atcttttattaatgtcgtctcgtctgtgacgagatatcatttaaggattggttctcaaaacatttgcagtggctgcctagga |
19268071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 19268307 - 19268279
Alignment:
| Q |
10 |
tagattattctccttgatcatgttggtcc |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19268307 |
tagattattctccttgatcatgttggtcc |
19268279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 8152870 - 8152933
Alignment:
| Q |
78 |
ataagctttaattgctttatggggtttgaattctactgcttatgatgattttgatgttcaactg |
141 |
Q |
| |
|
||||||||| ||| |||||||| | || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8152870 |
ataagctttgattactttatggaggtttaattatactgcttatgatgattttgatgttcaactg |
8152933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University