View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_high_7 (Length: 608)
Name: NF16758_high_7
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 10 - 592
Target Start/End: Original strand, 9799512 - 9800095
Alignment:
| Q |
10 |
gacatcatcatttcactatgagagtggtggctttctatttaagaatcatacccacttccacatcaatccactatacaaatggacatagagagcaaccaaa |
109 |
Q |
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| T |
9799512 |
gacatcatcatttcactatgagagtggtggctttctatttaagaatcatacccacttccacatcaatccactatacaaatggacataaagagaaaccaaa |
9799611 |
T |
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| Q |
110 |
gtcaagaaataatgaaactcacaccatcacaagatgttcgtgtttcttttgtatgaactcacaagattgttttgttgtgtccactttcacagtgacaatt |
209 |
Q |
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| T |
9799612 |
gtcaagaaataatgaaactcacaccatcacaagatgttcgtgtttcttttgtatgaactcacaagattgttttgttgtgtccactttcacagtgacaatt |
9799711 |
T |
|
| Q |
210 |
atcttcttcttatttgtaccaaaatttctcacatgttttcagtggctataaatcatttccaattgtccctcttgtcccgtacaaataatttgaagnnnnn |
309 |
Q |
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| T |
9799712 |
atcttcttcttatttgtaccaaaatttctcacatgttttcagtggctataaatcatttccaattgtccctcttgtcccgtacaaataatttgaagaaaaa |
9799811 |
T |
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| Q |
310 |
nngacaagaagtcggccaaaatatccaacttgtgaggagtgtgatttgttaatcagtgaaccatatttttcaataccatatctatataccattaagtatt |
409 |
Q |
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| T |
9799812 |
aagacaagaagtcggccaaaatatccaacttgtgaggagtgtgattggttaatcagtgaaccatatttttcaataccatatctatataccattaagtatt |
9799911 |
T |
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| Q |
410 |
aaccttgcctttttgagtnnnnnnnnctttttgaaatttatttgcatcttccc-ttgattaacttctccactttcctttagtgccttgtccattttctcc |
508 |
Q |
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| T |
9799912 |
aaccttgcctttttgagtaaaaaaaactttttgaaatttatttgcatcttccctttgattaacttctccactttcctttagtgccttgtccattttctcc |
9800011 |
T |
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| Q |
509 |
acaatgcttaaactctttctttgttccaacttttggttcctttttcattcacaattctaagctactggttaaagtacatcatat |
592 |
Q |
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| T |
9800012 |
acaatgcttaaactctttctttgttcctacttttggttccttcttcattcacaattctaagctactggttaaattacatcatat |
9800095 |
T |
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