View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_high_9 (Length: 554)
Name: NF16758_high_9
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 4300984 - 4300774
Alignment:
| Q |
13 |
agcaaaggtttgtatttgagttgtaatggtaaatgataagaacatagcaagtggatctaatatgcaaataccatgcaaatggttaattacttacgtcaca |
112 |
Q |
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| T |
4300984 |
agcaaaggtttgtatttgagttgtaatggtaaatgataagaacatagcaagtggatctaatatgcaaataccatgcaaatggttaattacttacggcaca |
4300885 |
T |
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| Q |
113 |
agttagtttggtggtatcttgcttgcactaacacgaattggataacgagacttaaactcctaaataacacaaatcgtacgagtttctatcatattcaata |
212 |
Q |
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| T |
4300884 |
agttagtttggtggtatcttgcttgcactaacacgaattggataacgagacttaaactcctaaataacacaaatcgtacgagtttctatcatattcaata |
4300785 |
T |
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| Q |
213 |
attcatagctg |
223 |
Q |
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| T |
4300784 |
attgatagctg |
4300774 |
T |
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Target: chr5 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 434 - 528
Target Start/End: Original strand, 34847808 - 34847902
Alignment:
| Q |
434 |
taaatgtttggttaatatttatagattctcaaaaacaattataatagagaagttaatgtttagttaaacatgagttgattttcatatgtatgaaa |
528 |
Q |
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| T |
34847808 |
taaatgtttggttaatatttatagattctcaaaaacaattataatagagaagttaatgtttagttaaacatgagttgattttcatgtgtatgaaa |
34847902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 34847603 - 34847669
Alignment:
| Q |
244 |
gagggaatttggttgtatgattgaaaatgattaatgtaggttcgagatattacttctatatgagttg |
310 |
Q |
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| T |
34847603 |
gagggaatttggttgtatgattgaaaatgattaatgtaggttcgagatattacttctatatgagttg |
34847669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 7467160 - 7467116
Alignment:
| Q |
29 |
tgagttgtaatggtaaatgataagaacatagcaagtggatctaat |
73 |
Q |
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| T |
7467160 |
tgagttctaatggtaaatgataagaccatagcaagtggatctaat |
7467116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 480
Target Start/End: Original strand, 20601146 - 20601191
Alignment:
| Q |
435 |
aaatgtttggttaatatttatagattctcaaaaacaattataatag |
480 |
Q |
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| T |
20601146 |
aaatgtttggttaatatttatttattcccaaaaactattataatag |
20601191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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