View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_11 (Length: 551)
Name: NF16758_low_11
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 4 - 539
Target Start/End: Complemental strand, 34426359 - 34425823
Alignment:
| Q |
4 |
cagaaagatccgtcaacatgcttaaaatacatatgttctatttatgattattatcgaaaggagtattgcacctttgataagagacaaaattcttctaaga |
103 |
Q |
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| T |
34426359 |
cagaaagatccgtcaacatacttaaaatacatatgttctatttatgattattatcgaaaggagtattgcacctttgataagagacaaaattcttctaaga |
34426260 |
T |
|
| Q |
104 |
ttcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcgtacattttgtatttttacgccacataaactactgcttttctcgaccaat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34426259 |
ttcacttgcctcttgtagtgaatacctctggctgggttaaaggtaagctcggacattttgtatttttccgccacataaactactgcttttctcgaccaat |
34426160 |
T |
|
| Q |
204 |
aacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggcgatggttataaggtattagtgaacatgctaaaatatattggtc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426159 |
aacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatttcaggtgatggttataaggtattagtgaacatgctaaaatatattggtc |
34426060 |
T |
|
| Q |
304 |
ccactcatatagttaagataggcatatccactgatctgaagaatttacctgttggaaagttcgggtcaaatgggaagaatgacagaagagttaaattgat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426059 |
ccactcatatagttaagataggcatatccactgatctgaagaatatacctgttggaaagttcgggtcaaatgggaagaatgacagaagagttaaattgat |
34425960 |
T |
|
| Q |
404 |
tgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatattttttagactt-aaagt |
502 |
Q |
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| T |
34425959 |
tgagatatatccagctcgtcaggactcatcgtaagcccaaatgttatatgttaccattttcagctgctagtttatttcaatattttttagacttaaaagt |
34425860 |
T |
|
| Q |
503 |
attatagaataacagaatatccctacttgtttcccta |
539 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
34425859 |
attatagaataacaaaatatccctacttgtttcccta |
34425823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 155 - 337
Target Start/End: Complemental strand, 34419059 - 34418880
Alignment:
| Q |
155 |
tacattttgtatttttacgccacataaactactgcttttctcgaccaataacaatatatcaattattatgttactcattcagtgtgttttgtcttgcatt |
254 |
Q |
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||||||||||||||| || ||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34419059 |
tacattttgtattttgacttaacataaactactgctttcctggac---taacaacatatcaattattatgttactcattcagttggttttgtcttgcatt |
34418963 |
T |
|
| Q |
255 |
tcaggcgatggttataaggtattagtgaacatgctaaaatatattggtcccactcatatagttaagataggcatatccactga |
337 |
Q |
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| T |
34418962 |
tcaggtgttggttatgaagtattagtggacatgctaaaatatattggtcccactcatgttgttaagatagacttatccactga |
34418880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 34419216 - 34419099
Alignment:
| Q |
35 |
tatgttctatttatgattattatcgaaaggagtattgcacctttgataagagacaaaattcttctaagattcacttgcctcttgtagtgaatacctctgg |
134 |
Q |
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||||||| ||||||||| |||||| |||| ||||| |||||||||||||| || ||||| ||||||| ||||| ||||||| |||||||||| ||||| |
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| T |
34419216 |
tatgttccatttatgatcattatcaaaagaagtatcgcacctttgataagcgaaaaaatgcttctaaaattcagacgcctcttatagtgaatacttctgg |
34419117 |
T |
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| Q |
135 |
ctgggttaaaggtaagct |
152 |
Q |
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||||||||||||| |||| |
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| T |
34419116 |
ctgggttaaaggtgagct |
34419099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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