View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_13 (Length: 493)
Name: NF16758_low_13
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 3151251 - 3151707
Alignment:
| Q |
17 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaaactccacggaattttatttccagcagatgaaactgaacattgatgatacac |
116 |
Q |
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| T |
3151251 |
aatatctatggtcacaggcatgcaaagaaatgctgctgcagccaagaaa-ctccacggaaatttatttccagcagatgaaactaaacattgatgacacac |
3151349 |
T |
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| Q |
117 |
caatggagtacttcttctgtagtgattgggagtgtactagaagagaaagtgagaatcttttgagcactatgaggaatcaaaaatgctattgtggtggaat |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| || | |
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| T |
3151350 |
caattgagtacttcttctgtagtgattgggagtgtactagaagagaaagtgggagtcttttgagcactatgaggaatcaaaaatgttattgtggtagagt |
3151449 |
T |
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| Q |
217 |
actggacaaagatgtagctccagaacatttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcct |
316 |
Q |
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| T |
3151450 |
actggacaaagatgtggctccagaacatctgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcct |
3151549 |
T |
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| Q |
317 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgatactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3151550 |
aatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatgacactattgtcgaacaaactgtggaaataagcaagaaagaggtat |
3151649 |
T |
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| Q |
417 |
gtttttctatcttctatataatctgtgattttgnnnnnnnnccttgtcatttgatgtt |
474 |
Q |
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| T |
3151650 |
gtttttctatcttctatataatctgtgattttgttttttttccttgtcatttgatgtt |
3151707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 354
Target Start/End: Original strand, 21194706 - 21194788
Alignment:
| Q |
272 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagct |
354 |
Q |
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| T |
21194706 |
gaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagct |
21194788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 21199931 - 21200041
Alignment:
| Q |
244 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
343 |
Q |
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| T |
21199931 |
tttgagcttaggaagcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaacta |
21200030 |
T |
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| Q |
344 |
catcagaagct |
354 |
Q |
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| T |
21200031 |
cttcacaagct |
21200041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 356
Target Start/End: Original strand, 24284442 - 24284554
Alignment:
| Q |
244 |
tttgagtttaggaaatggctttgttgaagaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatcta |
343 |
Q |
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| T |
24284442 |
tttgagtctaggaaatggctttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccacta |
24284541 |
T |
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| Q |
344 |
catcagaagcttg |
356 |
Q |
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| T |
24284542 |
cttcaaaagcttg |
24284554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 422
Target Start/End: Complemental strand, 24232270 - 24232120
Alignment:
| Q |
272 |
gaaactgctacttttatcatttccgacgatcattttgtgatgcctaatgttttggcaacagttgtacatctacatcagaagcttggaattgataccaatg |
371 |
Q |
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|||| |||||||||||||||||| || |||| || ||| |||||||||||||| | | || | || |||||| ||| ||||||||| | || || | || |
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| T |
24232270 |
gaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcgagactattg |
24232171 |
T |
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| Q |
372 |
atactattgtcgaacaaactgtggaaataagcaagaaagaggtatgttttt |
422 |
Q |
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| T |
24232170 |
atgctattgaggaacaagctgttgacatcaacaagaaagaggcatgctttt |
24232120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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