View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_low_15 (Length: 486)

Name: NF16758_low_15
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_low_15
NF16758_low_15
[»] chr3 (9 HSPs)
chr3 (207-474)||(18272275-18272546)
chr3 (12-156)||(41625298-41625442)
chr3 (12-156)||(5127394-5127538)
chr3 (27-156)||(54094125-54094254)
chr3 (12-156)||(5134649-5134793)
chr3 (67-156)||(54092686-54092775)
chr3 (67-161)||(5132991-5133085)
chr3 (87-156)||(41623652-41623721)
chr3 (87-157)||(5125800-5125870)
[»] chr2 (15 HSPs)
chr2 (12-161)||(59832-59981)
chr2 (9-122)||(4415207-4415320)
chr2 (12-159)||(14001439-14001586)
chr2 (12-157)||(39282793-39282938)
chr2 (12-156)||(15806112-15806256)
chr2 (67-156)||(25757381-25757470)
chr2 (12-156)||(32607179-32607323)
chr2 (9-151)||(859982-860124)
chr2 (67-157)||(4416992-4417082)
chr2 (67-156)||(62855-62944)
chr2 (34-156)||(15807921-15808043)
chr2 (48-156)||(40099226-40099334)
chr2 (34-156)||(32608069-32608191)
chr2 (67-135)||(40097569-40097637)
chr2 (67-156)||(39280386-39280475)
[»] chr6 (4 HSPs)
chr6 (9-161)||(25170292-25170444)
chr6 (67-158)||(25172144-25172235)
chr6 (34-156)||(11163800-11163922)
chr6 (12-58)||(11165302-11165348)
[»] chr7 (11 HSPs)
chr7 (12-156)||(25971680-25971824)
chr7 (12-153)||(6058417-6058558)
chr7 (12-156)||(46866465-46866609)
chr7 (12-156)||(23966047-23966191)
chr7 (12-156)||(31915018-31915162)
chr7 (12-133)||(43009621-43009742)
chr7 (68-156)||(31913469-31913557)
chr7 (67-156)||(6056766-6056855)
chr7 (87-156)||(17198928-17198997)
chr7 (87-135)||(46867989-46868037)
chr7 (67-161)||(23962299-23962393)
[»] chr4 (9 HSPs)
chr4 (12-156)||(44974046-44974190)
chr4 (12-133)||(50133050-50133166)
chr4 (9-145)||(9590312-9590448)
chr4 (12-157)||(37474143-37474287)
chr4 (66-156)||(50131162-50131252)
chr4 (68-156)||(27382117-27382205)
chr4 (34-156)||(37481031-37481153)
chr4 (12-57)||(27383921-27383966)
chr4 (63-156)||(26296925-26297018)
[»] chr1 (5 HSPs)
chr1 (12-156)||(43870261-43870405)
chr1 (12-161)||(51546272-51546420)
chr1 (48-156)||(51544135-51544243)
chr1 (9-74)||(42558039-42558104)
chr1 (87-155)||(43868615-43868683)
[»] chr8 (6 HSPs)
chr8 (12-153)||(44528120-44528261)
chr8 (12-156)||(37803608-37803752)
chr8 (67-161)||(37801461-37801555)
chr8 (67-156)||(15145797-15145886)
chr8 (9-73)||(38884781-38884845)
chr8 (23-133)||(15142983-15143092)
[»] scaffold0092 (2 HSPs)
scaffold0092 (12-161)||(34594-34743)
scaffold0092 (34-156)||(36852-36974)
[»] scaffold0204 (1 HSPs)
scaffold0204 (9-156)||(28341-28488)
[»] scaffold0129 (2 HSPs)
scaffold0129 (12-133)||(6006-6127)
scaffold0129 (68-156)||(4459-4547)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 207 - 474
Target Start/End: Original strand, 18272275 - 18272546
Alignment:
Q  207 gtaaaattgtgagccatcgagtactat--catatagtacaatgatgtttttgattgtcacatgttttgtcatcgagcttgaatgattacaaaacacatca 304  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18272275 gtaaaattgtgagccatggagtactatatcatatagtacaatgatgtttttgattgtcacatgttttgtcatcgagcttgaatgattacaaaacacatca 18272374  T
Q  305 atgcaattgtcagtagctaaattattgagcttgaagaaaatatatgaatcacatagcacatataatatagtagg--nnnnnnntagaaattgttagaagc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||| ||||||    
T  18272375 atgcaattgtcagtagctaaattattgagcttgaagaaaatatatgaatcacatagcacatataatatagtaggaaaaaaaaatagaaattgtaagaagc 18272474  T
Q  403 caaagaaatggtaaccattaaagcttcttacaatgtgactccaaatgaagtaaccccaaatggtcatttatg 474  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18272475 caaagaaatggtaaccattcaagcttcttacaatgtgactccaaatgaagtaaccccaaatggtcatttatg 18272546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 41625298 - 41625442
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  | | ||||||| ||||||||||  |||    
T  41625298 tcatcaccattaacaccccaaatggatgtagggactaatttgattgagatatgacaaattcagggacaaagtgtgcgtttcgataaattgggggacattt 41625397  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||    
T  41625398 ttgtccgattcgtgcaaattcagggacgaatttggatattcactc 41625442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 5127394 - 5127538
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||  | ||||||||| |||||| ||| ||||    
T  5127394 tcatcaccgttaacgccccaaatggacgtaaggactaatttgattgagatatgacaaattcagggataaagtgtgcatttcgataaattggaggacgttt 5127493  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||| |||| ||||||||||| | | |||||||| |||||||||    
T  5127494 ttgtccgatttgtgcaaattcaaggacgaatttgggtattcactc 5127538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 54094125 - 54094254
Alignment:
Q  27 ccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgc 126  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||   ||||||||||||||||| ||||    
T  54094125 ccccaaatggacgtagggactaatttgattgagatatgacaaattcagggacaaagcgtgcatttcgataaattgaaagatgtttttgtctgatttgtgc 54094224  T
Q  127 aaattcaggaatgaatttggatattcactc 156  Q
    ||||||| | |||||||||  |||||||||    
T  54094225 aaattcaaggatgaatttgagtattcactc 54094254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 5134649 - 5134793
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||||||||||| ||||  | ||||||||| |||||| ||||||||    
T  5134649 tcatcaccgttaacgccccaaatggacgtaaggtataatttgatggagatatgacaaattcagggataaagtgtgcatttcgataaattggaggatgttt 5134748  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||| |||||||||||||||| | | |||||| | |||||||||    
T  5134749 ttgtccgattcgtgcaaattcaaggacgaattttggtattcactc 5134793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 54092775 - 54092686
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||||||| | |||||||| |||||||||    
T  54092775 aaattcagggacaaagcgtgcatttcgatgaattggggaatgtttttgtccgattcgtgaaaattcagggacgaatttgggtattcactc 54092686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 5133085 - 5132991
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 161  Q
    ||||||| |||||||  || ||||||||| |||||| ||| ||||||||| |||||||||||||||| | |  |||||||||||| |||| ||||    
T  5133085 aaattcaaggacaaaatatgcatttcgataaattggaggacgtttttgtccgattcgtgcaaattcaaggactaatttggatatttactcaaaaa 5132991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 41623721 - 41623652
Alignment:
Q  87 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||| |||||||| |  |||||||| |||||||||||||||||| | ||||| ||||||||||||    
T  41623721 catttcgataaattggggaacatttttgtccgattcgtgcaaattcagggacgaattgggatattcactc 41623652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 5125870 - 5125800
Alignment:
Q  87 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcg 157  Q
    ||||||||| |||||| ||| ||||||||| |||||||||||||||| | |  ||||||| ||||||||||    
T  5125870 catttcgataaattggaggacgtttttgtccgattcgtgcaaattcaaggactaatttgggtattcactcg 5125800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 59981 - 59832
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    ||||||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  59981 tcatcaccggtaacgtcccaaatggacgtagggactaaattgattgagatatgacaaattcagggacaaagcgtgcatttcgatgaattgagggatgttt 59882  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 161  Q
    |||||||||||||||||||||||| |  ||||||| ||||||||| ||||    
T  59881 ttgtctgattcgtgcaaattcagggacaaatttgggtattcactcaaaaa 59832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 4415320 - 4415207
Alignment:
Q  9 acatcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatg 108  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||| | ||||| ||| ||||||||||||    
T  4415320 acatcatcaccgttaacgccccaaatggacgtagggactaatttgattgaaatatgacaaattcaggaataaagcgtgcattttgataaattgggggatg 4415221  T
Q  109 tttttgtctgattc 122  Q
    ||||||| ||||||    
T  4415220 tttttgtttgattc 4415207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 14001439 - 14001586
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||| || |||||||||||||| | ||| ||||||||||||||||||||| ||||| ||||  | ||||||||| |||||||||| ||||    
T  14001439 tcatcaccgttaacacctcaaatggacgtaggaactaacttgattgagatatgacaaatttagggataaagtgtgcatttcgataaattgggggacgttt 14001538  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaa 159  Q
    ||||||||||| |||||||||| | | | |||||| ||||||||||||    
T  14001539 ttgtctgattcatgcaaattcatggacggatttgggtattcactcgaa 14001586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 39282793 - 39282938
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||  |||| | ||||||||  |||||||||| ||||    
T  39282793 tcatcaccgttaacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggattaagcgtgcatttcgactaattgggggacgttt 39282892  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactcg 157  Q
    ||| | |||||||||||||||||| | |||||||| ||||||||||    
T  39282893 ttggccgattcgtgcaaattcagggaagaatttgggtattcactcg 39282938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 15806256 - 15806112
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  ||||||||||  |||    
T  15806256 tcatcaccgttaacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacattt 15806157  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||| | ||||||||||||| |||| | |||||||| |||||||||    
T  15806156 ttggccgattcgtgcaaatccagggacgaatttgggtattcactc 15806112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 25757470 - 25757381
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||||||||||  | ||||||||| ||||||||||  ||||||||||||||||||||||||||| | |||||||| |||||||||    
T  25757470 aaattcagggacaaagtgtgcatttcgataaattgggggacatttttgtctgattcgtgcaaattcagggacgaatttgggtattcactc 25757381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 32607323 - 32607179
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||  | ||  ||||| |||||| |||| | ||||||||  ||||||| || ||||    
T  32607323 tcatcaccgttaacgcctcaaatggacgtagggactaatttgattgacgtttgttaaatttagggactaagcgtgcatttcgactaattgggagacgttt 32607224  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||| | ||||||||||||| |||| |  ||||||  |||||||||    
T  32607223 ttggccgattcgtgcaaatccagggacaaatttgagtattcactc 32607179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 860124 - 859982
Alignment:
Q  9 acatcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatg 108  Q
    |||||||||||||||||| |||||||||||||| | | || |||||||||  | ||  |||||||||||  ||  || ||||||||| |||||  |||||    
T  860124 acatcatcaccgttaacgtcccaaatggacgtatgaactattttgattgacgtttgttaaattcagggatgaaatatgcatttcgattaattgaaggatg 860025  T
Q  109 tttttgtctgattcgtgcaaattcaggaatgaatttggatatt 151  Q
    ||||| || |||||||  ||||||||||| | |||||||||||    
T  860024 tttttatccgattcgtaaaaattcaggaacggatttggatatt 859982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 157
Target Start/End: Original strand, 4416992 - 4417082
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcg 157  Q
    ||||||||||||||| | | |||||||||||||||||||| ||||||||  |||||||| ||||||||| |  ||||||| ||||||||||    
T  4416992 aaattcagggacaaaacgtgcatttcgatgaattgggggacgtttttgttcgattcgtgaaaattcagggacaaatttgggtattcactcg 4417082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 62855 - 62944
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||||||||||| | ||||||||| ||||||||||  |||||||| |||||||| |||| |||| | |||||||| |||||||||    
T  62855 aaattcagggacaaagcgtgcatttcgattaattgggggacatttttgtcggattcgtgaaaatccagggacgaatttgggtattcactc 62944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 15807921 - 15808043
Alignment:
Q  34 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 133  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||| ||    
T  15807921 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgcaaatcca 15808020  T
Q  134 ggaatgaatttggatattcactc 156  Q
    || | |||||||| |||||||||    
T  15808021 gggacgaatttgggtattcactc 15808043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 40099226 - 40099334
Alignment:
Q  48 aatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttgga 147  Q
    |||||||||||||||||||||||| || |||||||| | || ||||||  || ||  ||| |||||||| ||||| |||||||||||| | |||||||      
T  40099226 aatttgattgagatatgacaaatttagcgacaaagcgtgcaattcgatacatcggatgatatttttgtccgattcatgcaaattcagggacgaatttgag 40099325  T
Q  148 tattcactc 156  Q
    |||||||||    
T  40099326 tattcactc 40099334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 32608069 - 32608191
Alignment:
Q  34 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 133  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | |||||||| |||| ||    
T  32608069 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgtaaatcca 32608168  T
Q  134 ggaatgaatttggatattcactc 156  Q
    || |  ||||||| |||||||||    
T  32608169 gggacaaatttgggtattcactc 32608191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 40097637 - 40097569
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcagg 135  Q
    ||||||||| ||||||| | ||||||||| |||| |||||  |||||| | ||||||||||||||||||    
T  40097637 aaattcaggaacaaagcgtgcatttcgataaatttggggacatttttgcccgattcgtgcaaattcagg 40097569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 39280475 - 39280386
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    |||||||||||| |||| | ||||||||  |||| ||||| ||||||| | ||||||| ||||| |||  | |||||||| |||||||||    
T  39280475 aaattcagggactaagcgtgcatttcgactaattaggggacgtttttggccgattcgtacaaatccagagacgaatttgggtattcactc 39280386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 25170444 - 25170292
Alignment:
Q  9 acatcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatg 108  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||  |||| |    
T  25170444 acatcatcaccgttatcgccacaaatggacgtagggactaatttgattgagatatgacaaattcaaggataaagcgtacatttcgatgaattaagggacg 25170345  T
Q  109 tttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 161  Q
    |||||||  |||||||||||||||||| | |||||||| ||||||||| ||||    
T  25170344 tttttgttcgattcgtgcaaattcagggacgaatttgggtattcactctaaaa 25170292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 25172144 - 25172235
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcga 158  Q
    ||||||||||| ||||| | |||||||||||||||||  || | |||||| |||||||| ||||||||| | |||||||| |||||| ||||    
T  25172144 aaattcagggataaagcgtgcatttcgatgaattgggaaatatatttgtccgattcgtgaaaattcagggacgaatttgggtattcattcga 25172235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 156
Target Start/End: Complemental strand, 11163922 - 11163800
Alignment:
Q  34 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 133  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  ||||||| |||||||||| | ||||||||||||| ||    
T  11163922 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggagatgtttttggccgattcgtgcaaatcca 11163823  T
Q  134 ggaatgaatttggatattcactc 156  Q
     | | |||||||| |||||||||    
T  11163822 aggacgaatttgggtattcactc 11163800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 11165302 - 11165348
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattga 58  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||    
T  11165302 tcatccccgttaacgccccaaatggacgtagggactaatttgattga 11165348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 25971824 - 25971680
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||  | ||||| ||| ||||  |||| ||||    
T  25971824 tcatcaccgttaacgccccaaatagacgtagggactaatttgattgagatatgacaaattcaaggacaaagtgtgcattttgataaattatgggacgttt 25971725  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||| |||||||| ||||||||| | ||||||||||||||||||    
T  25971724 ttgtccgattcgtggaaattcagggacgaatttggatattcactc 25971680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 6058417 - 6058558
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||  | ||||||||| |||||| | | ||||    
T  6058417 tcatcaccgttaacgccccaaatggacgtaaggactaatttgattgagatatgacaaattcaaggataaagtgtgcatttcgataaattggagaacgttt 6058516  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattca 153  Q
    |||||  |||| |||||||||| | | |||||||||||||||    
T  6058517 ttgtccaattcatgcaaattcaaggacgaatttggatattca 6058558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 46866609 - 46866465
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||| | |||||||||||| ||||||||||  | ||||||||| |||||| |||  |||    
T  46866609 tcatcaccgttaacgccccaaatagacatagggactaatttgattcaaatatgacaaatttagggacaaagtgtgcatttcgataaattggaggacattt 46866510  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||| ||||| |||||||||||| | |||||| |||||||||||    
T  46866509 ttgtccgattcttgcaaattcagggacgaatttagatattcactc 46866465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 23966047 - 23966191
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| || ||  ||||||| ||||||||  | ||||||||| |||||||||| ||||    
T  23966047 tcatcaccgttaacgccccaaatggacgtagggactattttgattgacatttgttaaattcaaggacaaagtgtgcatttcgattaattgggggacgttt 23966146  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    || |||||| |||| |||| |||||| |||||||| |||| ||||    
T  23966147 ttctctgatccgtgaaaatccaggaacgaatttgggtatttactc 23966191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 31915018 - 31915162
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||| |||||||| |||||||||||||||||| || |||||| ||  | ||  ||||||||||||||||| | ||||||||| |||| ||||| ||||    
T  31915018 tcatcaacgttaacgtcccaaatggacgtagggactattttgatggacgtttgttaaattcagggacaaagcgtgcatttcgattaattaggggacgttt 31915117  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||| |||||||| |||| || ||| ||||||||||||||||||    
T  31915118 ttgtccgattcgtgaaaatccaagaacgaatttggatattcactc 31915162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 43009621 - 43009742
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||| ||| ||||||||| ||| | || ||||||||| ||||||||||||| ||||||||  |  ||||||||| ||||| |||| ||||    
T  43009621 tcatcaccgttaacaccctaaatggacgaaggaactagtttgattgacatatgacaaattcggggacaaaatagccatttcgataaattgagggacgttt 43009720  T
Q  112 ttgtctgattcgtgcaaattca 133  Q
    || |||||||||||||||||||    
T  43009721 ttatctgattcgtgcaaattca 43009742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 31913557 - 31913469
Alignment:
Q  68 aattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    |||||||||||||||| | ||||||||| ||| |||||| ||||||||| |||||||| |||| |||| | ||||||||||||||||||    
T  31913557 aattcagggacaaagcgtgcatttcgattaatcgggggacgtttttgtccgattcgtgaaaatccagggacgaatttggatattcactc 31913469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 6056855 - 6056766
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||| ||||||||  | ||||||||| |||||| ||| ||||||||| |||||||||||||||||| | |||||||| |||||||||    
T  6056855 aaattcaaggacaaagtgtgcatttcgataaattggaggacgtttttgtccgattcgtgcaaattcagggacgaatttgggtattcactc 6056766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 17198997 - 17198928
Alignment:
Q  87 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||| |||||||||| ||||||||  |||||||||||||||||| | ||| ||| ||||||||||    
T  17198997 catttcgataaattgggggacgtttttgttcgattcgtgcaaattcagggacgaaattgaatattcactc 17198928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 46867989 - 46868037
Alignment:
Q  87 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcagg 135  Q
    ||||||||| |||||| ||| ||||||||| ||||||||||||||||||    
T  46867989 catttcgataaattggaggacgtttttgtccgattcgtgcaaattcagg 46868037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 23962393 - 23962299
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 161  Q
    |||||||||||||||   | | ||||||| |||| | ||| ||||||||| |||||||| ||||  ||| | |||||||||||||||||| ||||    
T  23962393 aaattcagggacaaaatgtgcgtttcgattaatttgaggacgtttttgtccgattcgtgaaaatctagggacgaatttggatattcactcaaaaa 23962299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 44974046 - 44974190
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||  |  |||||||| |||||| ||| ||||    
T  44974046 tcatctccgttaacgccccaaatggacgtagggactaatttgattgagatatgacaaatgcagggacaaagtgtgtatttcgataaattggaggacgttt 44974145  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||| ||||| |||||||||||| | | ||||||||||||||||    
T  44974146 ttgtccgattcctgcaaattcagggacggatttggatattcactc 44974190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 50133050 - 50133166
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||     ||||||||||||||| | ||||||||| |||||||||| ||||    
T  50133050 tcatcaccgttaacgccccaaatggacgaagggactaatttgattgagatat-----attcagggacaaagcgtgcatttcgataaattgggggacgttt 50133144  T
Q  112 ttgtctgattcgtgcaaattca 133  Q
    |||||| |||||||||||||||    
T  50133145 ttgtctaattcgtgcaaattca 50133166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 9590448 - 9590312
Alignment:
Q  9 acatcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatg 108  Q
    ||||||||  ||||||| ||||||||| ||| ||||| |||||||||||| ||||||||||||||   |||||  |  ||||||||| |||||| ||||     
T  9590448 acatcatcgtcgttaacaccccaaatgaacggagggactaatttgattgatatatgacaaattcataaacaaaatagccatttcgataaattggaggata 9590349  T
Q  109 tttttgtctgattcgtgcaaattcaggaatgaatttg 145  Q
    |||||||| |||||||||||||||| ||| |||||||    
T  9590348 tttttgtccgattcgtgcaaattcaagaacgaatttg 9590312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 37474287 - 37474143
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  | ||  ||||||||  || |||| | || |||||  |||||||||| ||||    
T  37474287 tcatcaccgttaacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagaaactaagcgtgca-ttcgactaattgggggacgttt 37474189  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactcg 157  Q
    ||| | ||||||||||||| |||| | |||||||  ||||||||||    
T  37474188 ttggccgattcgtgcaaatccagggacgaatttgtgtattcactcg 37474143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 50131252 - 50131162
Alignment:
Q  66 caaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||||||| |||| | ||||||||| |||||||||| ||||||||| |||||||||||||||||| |  ||||||| |||||||||    
T  50131252 caaattcagggacgaagcgtgcatttcgataaattgggggacgtttttgtccgattcgtgcaaattcagggacaaatttgggtattcactc 50131162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 27382205 - 27382117
Alignment:
Q  68 aattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    |||||||||||||||| | ||||| |||||||||||||| |||| |||| |||||||  ||||||||| | |||||| | |||||||||    
T  27382205 aattcagggacaaagcgtgcattttgatgaattgggggacgtttatgtccgattcgtaaaaattcagggacgaatttaggtattcactc 27382117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 37481031 - 37481153
Alignment:
Q  34 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 133  Q
    |||||| | ||| |||||||||||| || ||  |||||||||||| |||| | ||||||||| ||||| | || ||||||| | ||||||||||||| ||    
T  37481031 tggacggaaggactaatttgattgacatttgttaaattcagggactaagcgtgcatttcgattaattgtgagacgtttttggccgattcgtgcaaatcca 37481130  T
Q  134 ggaatgaatttggatattcactc 156  Q
     | | |||||||| |||||||||    
T  37481131 cggacgaatttgggtattcactc 37481153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 27383921 - 27383966
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattg 57  Q
    |||||||||||||| || |||||||||||||||| |||||||||||    
T  27383921 tcatcaccgttaacacctcaaatggacgtagggactaatttgattg 27383966  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 26296925 - 26297018
Alignment:
Q  63 tgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||||||||||||||  | ||||||||| | ||| || | ||||||  | ||||||| ||||||||   | ||||||||||||||||||    
T  26296925 tgacaaattcagggacaaagtgtgcatttcgataacttgaggaacgttttttgccgattcgtacaaattcaaagacgaatttggatattcactc 26297018  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 43870261 - 43870405
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||  | ||||||||| |||||  ||| ||||    
T  43870261 tcatcaccgttaacgccccaaatggacgtaaggactaatttgattgagatatgacaaattcagggataaagtgtgcatttcgataaattgaaggacgttt 43870360  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    || || ||||||||||||||||   | |||||||| |||||||||    
T  43870361 ttatccgattcgtgcaaattcaatgacgaatttgggtattcactc 43870405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 51546272 - 51546420
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||  | ||  |||||||| ||| |||| | ||||||||  |||||||||| ||||    
T  51546272 tcatcaccgttaacgccccaaatggacgtatggactaatttgattgacgtttgttaaattcagagactaagcgtgcatttcgactaattgggggacgttt 51546371  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 161  Q
    ||| | ||||||||||||| |||| | |||||||| ||||||||| ||||    
T  51546372 ttg-ccgattcgtgcaaatccagggacgaatttgggtattcactcaaaaa 51546420  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 51544243 - 51544135
Alignment:
Q  48 aatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttgga 147  Q
    ||||||||||| || ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||| || | | |||||||||    
T  51544243 aatttgattgacatttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttgaccgattcgtgcaaatccatgcacgaatttgga 51544144  T
Q  148 tattcactc 156  Q
    ||| |||||    
T  51544143 tatacactc 51544135  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 42558104 - 42558039
Alignment:
Q  9 acatcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcag 74  Q
    |||||| |||||||||| |||||| | |||||||||| ||| |||||||| || ||||||||||||    
T  42558104 acatcagcaccgttaacaccccaacttgacgtagggactaaattgattgaaatttgacaaattcag 42558039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 43868683 - 43868615
Alignment:
Q  87 catttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcact 155  Q
    ||||||||| |||| | ||| |||||| || |||||||||||||||||| |  ||||||| ||||||||    
T  43868683 catttcgataaattagaggacgtttttatccgattcgtgcaaattcagggactaatttgggtattcact 43868615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 44528120 - 44528261
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||| || | | ||||||||  ||||||||||  |||    
T  44528120 tcatcaccgttaacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggactaaacgtgcatttcgactaattgggggacattt 44528219  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattca 153  Q
    ||| | ||||||||||||||||| || |||||||| ||||||    
T  44528220 ttggccgattcgtgcaaattcagaaacgaatttgggtattca 44528261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 37803608 - 37803752
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||  | ||  ||||| |||||| |||| | ||||||||  |||||| |||  |||    
T  37803608 tcatcaccgttaacgccacaaatggacgtagggactaatttgattgacgtttgttaaatttagggactaagcgtgcatttcgactaattggaggacattt 37803707  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||  | ||||||||||||| |||||| |||||||| |||||||||    
T  37803708 ttagccgattcgtgcaaatccaggaacgaatttgggtattcactc 37803752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 37801555 - 37801461
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 161  Q
    |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||| |||| | |||||||||||||||||| ||||    
T  37801555 aaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgcaaatccagggacgaatttggatattcactccaaaa 37801461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 15145797 - 15145886
Alignment:
Q  67 aaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    ||||||||||||||||  | ||||||||| |||| ||||| ||||||||| ||||  || ||||| ||||| ||||||||||||||||||    
T  15145797 aaattcagggacaaagtgtgcatttcgattaatttggggacgtttttgtccgatttatgaaaatttaggaacgaatttggatattcactc 15145886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 38884781 - 38884845
Alignment:
Q  9 acatcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattca 73  Q
    |||||| |||||||||| |||||| || ||| ||| ||||| |||||||| ||||||||||||||    
T  38884781 acatcagcaccgttaacaccccaattgaacggaggaattaaattgattgacatatgacaaattca 38884845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 15143092 - 15142983
Alignment:
Q  23 aacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattc 122  Q
    |||||| ||||||||||||| || || ||||||| |  | ||  ||||||||||||||||  | ||||||||| |||| | ||| ||||||||| |||||    
T  15143092 aacgccacaaatggacgtagagactattttgattaacgtttgttaaattcagggacaaagtgtgcatttcgattaatt-gaggacgtttttgtccgattc 15142994  T
Q  123 gtgcaaattca 133  Q
    ||| |||||||    
T  15142993 gtgaaaattca 15142983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 34743 - 34594
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  ||||  |||| ||||    
T  34743 tcatcaccgttaacgccccaaatggacgtagggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgacaaattaagggacgttt 34644  T
Q  112 ttgtctgattcgtgcaaattcaggaatgaatttggatattcactcgaaaa 161  Q
    ||| | ||||||||||||| || | | |||||||| ||||||||| ||||    
T  34643 ttgaccgattcgtgcaaatccaaggacgaatttggttattcactccaaaa 34594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 36852 - 36974
Alignment:
Q  34 tggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattca 133  Q
    |||||| | ||| ||||||||||||  | ||  |||||||||||| |||| | ||||||||  |||||||||| ||||||| | ||||||||||||||||    
T  36852 tggacggaaggactaatttgattgacgtttgttaaattcagggactaagcgtgcatttcgactaattgggggacgtttttggccgattcgtgcaaattca 36951  T
Q  134 ggaatgaatttggatattcactc 156  Q
    || |||||||||| |||||||||    
T  36952 gggatgaatttgggtattcactc 36974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 28488 - 28341
Alignment:
Q  9 acatcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatg 108  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||  | ||  ||||||||||||||||  | ||||||||| |||||||||| |    
T  28488 acatcatcaccgttaacaccccaaatggacgtagggactattttgattgacgtttgttaaattcagggacaaagagtgcatttcgattaattgggggacg 28389  T
Q  109 tttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    |||||||  |||||||| |||| || | | |||||||  |||||||||    
T  28388 tttttgttcgattcgtgaaaatccaaggacgaatttgagtattcactc 28341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 6006 - 6127
Alignment:
Q  12 tcatcaccgttaacgccccaaatggacgtagggattaatttgattgagatatgacaaattcagggacaaagcatacatttcgatgaattgggggatgttt 111  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| ||  | ||  ||||||||||||||| | | ||||||||| |||| ||||| ||||    
T  6006 tcatcaccgttaacaccccaaatggacgtagggactaatttgatggacgtttgttaaattcagggacaaaacgtgcatttcgattaattaggggacgttt 6105  T
Q  112 ttgtctgattcgtgcaaattca 133  Q
    ||||| |||||||| |||||||    
T  6106 ttgtccgattcgtgaaaattca 6127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 4547 - 4459
Alignment:
Q  68 aattcagggacaaagcatacatttcgatgaattgggggatgtttttgtctgattcgtgcaaattcaggaatgaatttggatattcactc 156  Q
    |||||||||||||||| | |||||| || |||||||||| |||||||||  ||||||  |||| |||| | ||||||||||||||||||    
T  4547 aattcagggacaaagcgtgcatttcaattaattgggggacgtttttgtccaattcgttaaaatccagggacgaatttggatattcactc 4459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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