View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_2 (Length: 693)
Name: NF16758_low_2
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 167 - 686
Target Start/End: Original strand, 42469844 - 42470361
Alignment:
| Q |
167 |
tactcttgtcagtttcaacttcactacaggaatttggcatctacctagaagtctccttcaataaaaggaggtatgtattctcttattaattattgtaaca |
266 |
Q |
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| T |
42469844 |
tactcttgtcagtttcaacttcactacaggaatttggcatctgcctagaagtctccttcaataaaaggaggtatgtattctcttattaattattgtaaca |
42469943 |
T |
|
| Q |
267 |
tgtgccttaaaacacaagttaatggactagttatagaaatttttatgaaattcatacattcaaagttaaaaagnnnnnnnnnnnccatcacacgatttct |
366 |
Q |
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| T |
42469944 |
tgtgccttaaaacacaagttaatggactagttatagaaatttttatgaaattcatacattcaaagttaaattttttttttttttccatcacacgatttct |
42470043 |
T |
|
| Q |
367 |
attggtagataacttaacgccttccttaa-ggcacatgttggcatgacagaaatctattgaagttattatcattacaagtgctatttaatttgcagctat |
465 |
Q |
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| T |
42470044 |
attggtagataacttaacgccttccttaaaggcacatgttggcatgacagaaatctattgaagttattatcattactagtgctatttaatttgcagctat |
42470143 |
T |
|
| Q |
466 |
ctaacatgtttagttttctcttctttgttttttcttctcaagccaatggaagatgtatgttattcattctttaatgaccnnnnnnnnnnnnnnnnngcat |
565 |
Q |
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| T |
42470144 |
ctaacatgttttgttttctttgctttgttttttcttctcaagccaatggaagatgtatgttattcattctttaatgatcttttttattaattttttgcat |
42470243 |
T |
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| Q |
566 |
tacaattgtttcctactacactattgttggatggttgtttaattctttatcttgtgaactcttacaggcagtgataatgaaccaggaagaggaattcaac |
665 |
Q |
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| T |
42470244 |
tacaattgtttcctactacattattgttggatggttgtttaattcttta---tgtgaactcttacaggcagtgataatgaaccaggaagaggaattcaac |
42470340 |
T |
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| Q |
666 |
attggaccactatctgtgctc |
686 |
Q |
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| T |
42470341 |
attggaccactatctgtgctc |
42470361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 42469717 - 42469811
Alignment:
| Q |
19 |
gtgagggaccaaattgtttgtatttttagtatat-atatgatatgatgatatttgtgctctttgcaatttatccaaaagtttagactccattccc |
112 |
Q |
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| T |
42469717 |
gtgagggaccaaattgtttgtatttttagtatatgatatgataggatgatatttgtgctctttgcaatttatccaaaagtttagactccattccc |
42469811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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