View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_low_21 (Length: 420)

Name: NF16758_low_21
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_low_21
NF16758_low_21
[»] chr4 (20 HSPs)
chr4 (23-403)||(24420040-24420419)
chr4 (23-225)||(24471207-24471402)
chr4 (23-349)||(24475730-24476063)
chr4 (263-357)||(24471408-24471502)
chr4 (23-239)||(24406228-24406452)
chr4 (23-96)||(24406481-24406554)
chr4 (23-115)||(24420423-24420515)
chr4 (23-115)||(24471111-24471203)
chr4 (26-115)||(24471018-24471107)
chr4 (23-115)||(24420519-24420611)
chr4 (23-115)||(24420807-24420899)
chr4 (23-115)||(24421095-24421187)
chr4 (23-111)||(24470488-24470576)
chr4 (29-105)||(24470686-24470762)
chr4 (53-108)||(24420622-24420677)
chr4 (57-115)||(24406558-24406616)
chr4 (77-115)||(24476731-24476769)
chr4 (23-111)||(24421243-24421331)
chr4 (375-403)||(24471524-24471552)
chr4 (23-99)||(24477074-24477150)
[»] scaffold0879 (2 HSPs)
scaffold0879 (23-115)||(4587-4679)
scaffold0879 (23-111)||(4443-4531)
[»] chr2 (5 HSPs)
chr2 (23-107)||(41900272-41900356)
chr2 (53-115)||(41899832-41899894)
chr2 (23-98)||(41900089-41900164)
chr2 (53-114)||(41900553-41900614)
chr2 (27-115)||(41900360-41900448)
[»] chr1 (7 HSPs)
chr1 (53-111)||(11879349-11879407)
chr1 (76-115)||(11905000-11905039)
chr1 (77-115)||(11881952-11881990)
chr1 (77-115)||(11891186-11891224)
chr1 (54-108)||(11902063-11902117)
chr1 (23-96)||(11879484-11879557)
chr1 (32-108)||(11879445-11879521)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 23 - 403
Target Start/End: Complemental strand, 24420419 - 24420040
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatc 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420419 tatggctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatc 24420320  T
Q  123 cctaccactacaactcacccccgcctcccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattatattcagcattgttgtggttaatt 222  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  24420319 cctacctctacaactcacccccgcctcccatctattaagcttccggctattatttg-aaaaaatttcaatgaattatattcagcattgttgtggttaatt 24420221  T
Q  223 tgtattcaagcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcat 322  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420220 tgtattcaatcttttgttaataaaaaagtctatgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcat 24420121  T
Q  323 aagtttgtatttatttatctcctttagttgtttttnnnnnnntannnnnnnngttcgtttttaccttcttatcactaaaat 403  Q
    |||||||||||||||| ||||||||||||||||||       ||        |||||||||||||||||||||||||||||    
T  24420120 aagtttgtatttatttttctcctttagttgtttttaagaaaatattttttttgttcgtttttaccttcttatcactaaaat 24420040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 24471207 - 24471402
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatc 122  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||    
T  24471207 tatgtctataggtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctcc------accatctccatcacctcctccatatcatc 24471300  T
Q  123 cctaccactacaactcacccccgcctcccatctattaagcttccggctattatttgtnnnnnnnntcaatgaattatattcagcattgttgtggttaatt 222  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||||||||||    
T  24471301 cctacctctacagctcacccccgcctcccatctattaagcttccggctatcatttg-aaattttttcaatgaattatattcagcattgttgtggttaatt 24471399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 23 - 349
Target Start/End: Complemental strand, 24476063 - 24475730
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctccatatcatc 122  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||| ||||| |||||||||| ||||||||||| ||||     
T  24476063 tatgtctataagtcaccgccacctcctaccccttcaccaccgcctccttgtatttagaagtctcctcctcccccatctccataacctcctccatctcatt 24475964  T
Q  123 cctaccactacaactcacccccgcctcccatctattaa-gcttccggcta---ttatttgtnnnnnnnntcaatgaattatattcagcattgttgtggtt 218  Q
    || | | |||||||||||||||||||||| |||||||| |||||||||||   |||||||         |||| |||||||||||||||||||| |||||    
T  24475963 ccgatctctacaactcacccccgcctcccgtctattaaggcttccggctatagttatttg-aaattttttcaaagaattatattcagcattgttctggtt 24475865  T
Q  219 aatttgtattcaagcttttgttaataaaa-aagtctatgctttacagtgaattaagagcc---ttattttgattcaaatgcatctgtgcatgcatggtgt 314  Q
    |||||||||  |||||||||| ||||||| || | ||| |  |||| |||||||||||||   |||||| | ||||| ||||  |||||||| |||||||    
T  24475864 aatttgtatcgaagcttttgtgaataaaagaattttatacactacaatgaattaagagcctaattatttcggttcaagtgcaattgtgcatgtatggtgt 24475765  T
Q  315 taattcataagtttgtatttatttatctcctttag 349  Q
    ||||||||||||  ||||||||  |||||||||||    
T  24475764 taattcataagtcagtatttatcaatctcctttag 24475730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 263 - 357
Target Start/End: Original strand, 24471408 - 24471502
Alignment:
Q  263 agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt 357  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24471408 agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataagtttgtgtttatttatctcctttagttgttttt 24471502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 24406452 - 24406228
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctc------caccatctccatcacctcctccat 116  Q
    ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||      |||||||||| |||||||||||||    
T  24406452 tatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactccacctccacctccaccatctccttcacctcctccat 24406353  T
Q  117 atcatccctaccactacaactcacccccgcctcccatctattaagcttccggctat---tatttgtnnnnnnnntcaatgaattatattcagcattgttg 213  Q
    |||||||||||| ||| |||| |||||| ||||||   |||||||||| ||| |||    | |||         |||||||||||| |||| ||||||||    
T  24406352 atcatccctaccgctataactaacccccacctcccgcgtattaagctttcggatataacaacttg-aaattttttcaatgaattatgttcaacattgttg 24406254  T
Q  214 tggttaatttgtattcaagcttttgt 239  Q
    ||||||||||||||| ||||||||||    
T  24406253 tggttaatttgtatttaagcttttgt 24406228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 24406554 - 24406481
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccacc 96  Q
    ||||||| ||||||||| |||||||||||||||||||| || ||||||||||| |||||| |||||||||||||    
T  24406554 tatgtctttaagtcaccaccacctccttcgccttcaccgccacctccttatatctacaagactccacctccacc 24406481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 24420515 - 24420423
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    ||||||||||||||||| |||||||||||  |||||||||| ||||| ||    ||||| |||||||||||||| ||||||||||||||||||    
T  24420515 tatgtctataagtcacctccacctccttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctcca 24420423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 24471111 - 24471203
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||||| |||||||||| |||||||||||  |||||||||| ||||| ||    ||||| |||||||||||||| ||||||||||||||||||    
T  24471111 tatgtccataagtcacctccacctccttcagcttcaccacctcctccatactactacaaatctccacctccaccttctccatcacctcctcca 24471203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 24471018 - 24471107
Alignment:
Q  26 gtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    ||||||||||| || || |||||||| |||||||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||||||||||    
T  24471018 gtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcacctcctcca 24471107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 24420611 - 24420519
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||||||||||||| || || |||||||| |||||||| || ||||| ||| ||||||| ||||| || ||||||||||| ||||| ||||||    
T  24420611 tatgtctataagtcccctcctcctccttctccttcaccccctcctccatatgtttacaaatctcctcccccaccatctccttcaccccctcca 24420519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 24420899 - 24420807
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    ||||| ||||||||||| ||||||||||| ||||| || || ||||| ||| |||||||||| ||||| |||||||| || || |||||||||    
T  24420899 tatgtatataagtcaccaccacctccttccccttcccctcctcctccatatgtttacaagtccccacccccaccatcaccttctcctcctcca 24420807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 24421187 - 24421095
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||| ||||||    
T  24421187 tatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctcca 24421095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 24470488 - 24470576
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 111  Q
    ||||| || |||||||| ||||||||||| |||||||| || ||||| ||| | |||||||| |||||||| |||||||| ||||||||    
T  24470488 tatgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcc 24470576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 24470686 - 24470762
Alignment:
Q  29 tataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatc 105  Q
    |||||||| || |||||||| || |||||||| || ||||| ||| | |||||||| |||||||||||||| |||||    
T  24470686 tataagtcgccaccacctccatctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatc 24470762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 24420677 - 24420622
Alignment:
Q  53 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 108  Q
    ||||||||||||||||| ||||| |||||||| ||||| |||||||| || |||||    
T  24420677 ccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcacc 24420622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 24406616 - 24406558
Alignment:
Q  57 caccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    ||||||| || || ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  24406616 caccaccaccaccgtatgtttacaaatctccacccccaccatctccttcacctcctcca 24406558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 24476769 - 24476731
Alignment:
Q  77 tacaagtctccacctccaccatctccatcacctcctcca 115  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  24476769 tacaaatctccacctccaccttctccatcacctcctcca 24476731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 24421331 - 24421243
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 111  Q
    ||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| ||||||||||| || ||||||||    
T  24421331 tatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcc 24421243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 403
Target Start/End: Original strand, 24471524 - 24471552
Alignment:
Q  375 gttcgtttttaccttcttatcactaaaat 403  Q
    |||||||||||||||||||||||||||||    
T  24471524 gttcgtttttaccttcttatcactaaaat 24471552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 24477150 - 24477074
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatc 99  Q
    |||||||||||| |||| || ||||| || || || ||||| ||||| ||| ||||||| |||||||| ||||||||    
T  24477150 tatgtctataaggcaccacctcctccatctccatccccaccacctccatatgtttacaaatctccacccccaccatc 24477074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 4587 - 4679
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||||||| |||||||| ||||| || || || || ||||| ||||| |||||||||||||| ||||| |||||||| |||||||| ||||||    
T  4587 tatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctcca 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 4443 - 4531
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 111  Q
    ||||||||||||   || ||||| || || || |||||||| ||||| ||| | ||||||||||| ||||||||||| || ||||||||    
T  4443 tatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcc 4531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 41900356 - 41900272
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcac 107  Q
    |||||||| || || || |||||||| || ||||||||||| ||||| ||| | ||||||||||| |||||||||||| ||||||    
T  41900356 tatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctacaagtctcctcctccaccatctgcatcac 41900272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 41899894 - 41899832
Alignment:
Q  53 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||||||| || ||||| ||| |||||||||||||||||||||| ||| | ||||||||||||    
T  41899894 ccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctcca 41899832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 41900164 - 41900089
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccat 98  Q
    |||||||| || || || |||||||| || ||||||||||||||||| ||| ||||||| ||||| || |||||||    
T  41900164 tatgtctacaaatctcctccacctccctctccttcaccaccgcctccatatgtttacaaatctcctccaccaccat 41900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 41900614 - 41900553
Alignment:
Q  53 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcc 114  Q
    ||||||||||| || ||||||||||| ||||| ||||| || || ||||| |||||||||||    
T  41900614 ccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctcc 41900553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 41900448 - 41900360
Alignment:
Q  27 tctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||| ||||| || ||||| || || || |||||||| || ||||||||||||||||| ||||| || || ||||| |||| |||||||    
T  41900448 tctacaagtccccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctcca 41900360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 11879349 - 11879407
Alignment:
Q  53 ccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacctcc 111  Q
    ||||||||||| ||||||||| ||||||| || |||||||| ||||| |||||||||||    
T  11879349 ccttcaccaccacctccttatgtttacaaatcgccacctcctccatccccatcacctcc 11879407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 11905000 - 11905039
Alignment:
Q  76 ttacaagtctccacctccaccatctccatcacctcctcca 115  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  11905000 ttacaagtcaccacctccaccatctccatctcctcctcca 11905039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 11881952 - 11881990
Alignment:
Q  77 tacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11881952 tacaagtcaccacccccaccatctccatcacctcctcca 11881990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 11891186 - 11891224
Alignment:
Q  77 tacaagtctccacctccaccatctccatcacctcctcca 115  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  11891186 tacaagtcaccacccccaccatctccatcacctcctcca 11891224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 11902063 - 11902117
Alignment:
Q  54 cttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 108  Q
    |||||||||| ||||||||| | |||||||| ||||| ||||||||||| |||||    
T  11902063 cttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 11879484 - 11879557
Alignment:
Q  23 tatgtctataagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccacc 96  Q
    ||||| || |||||||| ||||| || || ||||||||||| ||||||||| | |||||||| ||||| |||||    
T  11879484 tatgtgtacaagtcaccaccaccgccatctccttcaccaccacctccttatgtgtacaagtcaccaccaccacc 11879557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 11879445 - 11879521
Alignment:
Q  32 aagtcaccgccacctccttcgccttcaccaccgcctccttatatttacaagtctccacctccaccatctccatcacc 108  Q
    |||||||| ||||| ||  | ||||||||||| ||||||||| | |||||||| ||||| || |||||||| |||||    
T  11879445 aagtcaccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcacc 11879521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University