View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_22 (Length: 410)
Name: NF16758_low_22
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 149 - 394
Target Start/End: Complemental strand, 16687454 - 16687207
Alignment:
| Q |
149 |
aacacatcaatgatgtctgaaagacgcatgtgatctttaactcgagtactccaactttggttacaaacatttagaatagaaagatcagaagaagtatcaa |
248 |
Q |
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| T |
16687454 |
aacacatcaatgatgtctgaaagaaacatgtgatcgttaactcgagtactccaactttggttacaaacatttagaatagaaagatcagaagaagtatcaa |
16687355 |
T |
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| Q |
249 |
taatatatacaatgaaatgctgaagccataaacaggagtaataattctttttcttaaccagaagcatttttattaaaattgcaat----cgcaactac-n |
343 |
Q |
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| T |
16687354 |
taatatatacaatgaaatgctgaagccataaacaggag---taattctttttcttaaccagaagcatttttattaaaattgcaatagcaagcaactacaa |
16687258 |
T |
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| Q |
344 |
nnnnnnntgccccaattacagaaccctcatatgggttacacagctagaaac |
394 |
Q |
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| T |
16687257 |
aaaaaaaagccccaattacagaaccctcatatgggttacacagctagaaac |
16687207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 16687775 - 16687639
Alignment:
| Q |
1 |
agcggaaagagacttgcaaaacaagtcagcactctaacgctcaaatgagtgaagagaaatgaggaggaaagcgtgcgaaaagttgtgaaattgtcatcgt |
100 |
Q |
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| T |
16687775 |
agcggaaagagacttgcaaaacaagttagcactctaacgctcaaatgagtgacgagaaatgaggaggaaagtgtgcgaaaagtggtgaaattgtcatcgt |
16687676 |
T |
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| Q |
101 |
agcttgagtgtgacattaagtcgcacttttatatcct |
137 |
Q |
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| T |
16687675 |
agcttgagtgtgacgttaagtcgcgcttctatatcct |
16687639 |
T |
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