View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_23 (Length: 409)
Name: NF16758_low_23
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_23 |
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| [»] scaffold0024 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 6914716 - 6915116
Alignment:
| Q |
1 |
aagtttaggccttttcaatttcttgttttcacgagcatcgtcaacattgttgccgttagatatttcctttaacttttcccgtttcattttctttgttttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6914716 |
aagtttaggccttttcaatttcttgttttcacgagcattgtcaacattgttgccattagatatttcctttaacttttcccgcttcattttctttgttttc |
6914815 |
T |
|
| Q |
101 |
tcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgatagatccactacaagctcctgtggtatataacaaatat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6914816 |
tcatcttcaacctttaaccctatgttttcacataatgagttttccttctcaggttcccatgatagatccactacaagctcctgtagtatataacaaatat |
6914915 |
T |
|
| Q |
201 |
gaaaatcaaccataaaaacaactatgaaaatcaacacatttttgcttctgcatcatttgtttcaattgcatcgatgaagaggaaacttattaaccatcaa |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6914916 |
gaaaatcaaccacaaaaacaactatgaaaatcaacacatttttgcttctgcatcatttgtttcaattgcatcgatgaagaggaaacttattaaccatcaa |
6915015 |
T |
|
| Q |
301 |
acacaaatttatcttatgtgtcaactacagaaaaatggagagaatctacacaccttttccaaatttgcttcttttgaaggaaaaacaacaatattcttcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
6915016 |
acacaaatttatcttatgtgtcaactacagaaaaatggagagaatcaacacaccttttccaaatttgcttcttttgaaggcaaaacaacaatattgttcg |
6915115 |
T |
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| Q |
401 |
a |
401 |
Q |
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| T |
6915116 |
a |
6915116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 64 - 363
Target Start/End: Complemental strand, 153805 - 153504
Alignment:
| Q |
64 |
ttcctttaacttttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgat |
163 |
Q |
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|||||||||||||| ||| |||||| |||| |||||| ||| |||||||||||| |||||||| ||| || ||| || | |||| ||||||||| ||| |
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| T |
153805 |
ttcctttaactttttccgcttcattgtcttggttttcccattttcaacctttaaacctatgtttccacctactgaattctgcttcacaggttccccagat |
153706 |
T |
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| Q |
164 |
agatccactacaagctcctgtggtatataacaaatatgaaaatcaaccat-aaaaacaactatgaaaatcaacacatttttgcttctg-catcatttgtt |
261 |
Q |
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||||||||||||||||||| || ||||||||| ||||||||||||| ||| |||||| || |||||||||||||||||||||||| || ||||||| ||| |
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| T |
153705 |
agatccactacaagctcctatgttatataacagatatgaaaatcaagcataaaaaactacaatgaaaatcaacacatttttgcttatgccatcattagtt |
153606 |
T |
|
| Q |
262 |
tcaattgcatcgatgaagaggaaacttattaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatggagag--aatctacacaccttttc |
359 |
Q |
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||| | |||| || ||| |||| ||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||| |||| |||||||||||| |
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| T |
153605 |
tcagtagcatacataaagtggaaccttattaaccatcaaacac--agttaacttatgtgtcaacgacagaaaaatggagagaaaatcaacacaccttttc |
153508 |
T |
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| Q |
360 |
caaa |
363 |
Q |
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|||| |
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| T |
153507 |
caaa |
153504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 63 - 250
Target Start/End: Complemental strand, 154113 - 153926
Alignment:
| Q |
63 |
tttcctttaacttttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatga |
162 |
Q |
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||||||||||||||| | |||| | |||| |||||||||| |||||||||||| |||||||||||| || ||| || | |||| ||||||||| ||| |
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| T |
154113 |
tttcctttaactttttcttcttcactgtcttggttttctcattttcaacctttaaacctatgttttcacctactgaattctgcttcccaggttcccctga |
154014 |
T |
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| Q |
163 |
tagatccactacaagctcctgtggtatataacaaatatgaaaatcaaccataaaaacaactatgaaaatcaacacatttttgcttctg |
250 |
Q |
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| T |
154013 |
tagatccactactagctcctgaaatacataacaaatatgaaaatcaatcataaaatttactatgaaaatcaacacatttttgcttctg |
153926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 64 - 361
Target Start/End: Complemental strand, 153498 - 153200
Alignment:
| Q |
64 |
ttcctttaacttttcccgtttcattttctttgttttctcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgat |
163 |
Q |
| |
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|||||||||||||| ||| |||| |||||| |||||||||| |||||||||||| || ||||| ||| || ||| || |||||| ||||||| || |
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| T |
153498 |
ttcctttaactttttccgattcactttcttggttttctcattttcaacctttaaacctttgtttccacctagtgaattcagcttctcgggttccccaaat |
153399 |
T |
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| Q |
164 |
agatccactacaagctcctgtggtatataacaaatatgaaaatcaaccataaaaacaactatgaaaatcaacac-atttttgcttctg-catcatttgtt |
261 |
Q |
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||||| || || ||||||||| |||||||||| |||||||||||| | ||||||| |||||| |||||||||| | ||||||||||| ||||||| ||| |
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| T |
153398 |
agatctaccactagctcctgtattatataacaagtatgaaaatcaatcttaaaaactactatggaaatcaacacaaattttgcttctgccatcattagtt |
153299 |
T |
|
| Q |
262 |
tcaattgcatcgatgaagaggaaacttattaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatg--gagagaatctacacaccttttc |
359 |
Q |
| |
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||| |||||| || | ||||| ||||||||||||||||||| | ||| | |||||||||||| ||||||||| |||| |||| |||||||||||| |
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| T |
153298 |
tcatttgcatacat-agaaggaaccttattaaccatcaaacac--agttaacacatgtgtcaactagagaaaaatgaagagaaaatcaacacaccttttc |
153202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 341
Target Start/End: Complemental strand, 154291 - 154142
Alignment:
| Q |
191 |
taacaaatatgaaaatcaaccataaaaacaactatgaaaatcaacacatttttgcttctg-catcatttgtttcaattgcatcgatgaagaggaaactta |
289 |
Q |
| |
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||||||||||||||| ||| ||||| ||| ||| || ||||| ||||||||||||||||| ||||||| |||| |||| || |||||||| ||||||| |
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| T |
154291 |
taacaaatatgaaaaccaagcataataactactttgcaaatcgacacatttttgcttctgtcatcattagtttgaattatatacatgaagagaaaactta |
154192 |
T |
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| Q |
290 |
ttaaccatcaaacacaaatttatcttatgtgtcaactacagaaaaatggaga |
341 |
Q |
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||||||||||| |||| | | |||||||||||||| |||||||||||||| |
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| T |
154191 |
ttaaccatcaa--tcaaagtaaacttatgtgtcaactgcagaaaaatggaga |
154142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 154757 - 154566
Alignment:
| Q |
1 |
aagtttaggccttttcaatttcttgttttcacgagcatcgtcaacattgttgccgttagatatttcctttaacttttcccgtttcattttctttgttttc |
100 |
Q |
| |
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|||||||||| ||||| |||||||||||| | |||||| |||||| ||||||| || |||||||||||||| |||||||| |||| |||||| |||||| |
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| T |
154757 |
aagtttaggctttttcgatttcttgttttggcaagcatcatcaacactgttgccattggatatttcctttaagttttcccgcttcactttcttggttttc |
154658 |
T |
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| Q |
101 |
tcatcttcaacctttaacgctatgttttcacataatgagttttccttctcaggttcccatgatagatccactacaagctcctgtggtatata |
192 |
Q |
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||| | |||||||| | || | | ||| | | |||||||| ||| ||||||| ||||||||| ||| |||| ||||||| ||||||| |
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| T |
154657 |
tcacgtccaacctttgaagcattaactccacctgaggagttttctttcccaggttcacatgatagacccaagacaacctcctgtagtatata |
154566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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