View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_24 (Length: 404)
Name: NF16758_low_24
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 98 - 386
Target Start/End: Original strand, 47875111 - 47875395
Alignment:
| Q |
98 |
ttaaatgcatgttacacgacgtaggtgcatacaaataaaattcttatatatatgtaataatcatgtttaattaagatataatatatgcaggacaaaggtg |
197 |
Q |
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| T |
47875111 |
ttaaatgcatgttacacaacgtaggtgcatacaaataaaattcttata----tgtaataatcatgtttaattaagatataatatatgcaggacaaaggtg |
47875206 |
T |
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| Q |
198 |
aaacaaacagaagtggactgtgaggcactgaagcattgttatgaaactctaacagaagagaacaggaggctggaagaggagttgaaagagcttaaatcca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47875207 |
aaacaaacagaagtggactgtgaggcactgaagcattgttatgaaactctaacagaagagaacaggaggctggaagaggagttgaaagagcttaagtcca |
47875306 |
T |
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| Q |
298 |
tgaaaaccgtaaataattacatgcagcttccggttgccagtcttacagtttgcccttcttgtaaaagaatttgcaccggcaccggcacc |
386 |
Q |
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| T |
47875307 |
tgaaaaccgtaaataattacatgcagcttccggttgccagtcttacagcttgcccttcttgtaaaagaatttgcaccggcaccggcacc |
47875395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 47874950 - 47875045
Alignment:
| Q |
1 |
tggcaagcaagctgaatcttgggacgagacaagtggaggtgtggtttcagaacaggagggcaaggttgtaattctatatttacaatcattattctc |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47874950 |
tggcaagcaagctgaatcttgggacgagacaagtggaggtgtggtttcagaacaggagggcaaggttgtaattctatatttacaatcattattctc |
47875045 |
T |
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