View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_29 (Length: 374)
Name: NF16758_low_29
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_29 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 6914747 - 6914406
Alignment:
| Q |
14 |
gtgaaaagaagaaattgaaaaggcctaaactttccaatggagtttccgatggtgatgtgaaaagaaatgctgatgctgaaatggaaacaaaagtagagca |
113 |
Q |
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| T |
6914747 |
gtgaaaacaagaaattgaaaaggcctaaactttccaatggagtttccgatggtgatgtgaaaagaaatgctgatgctgaaatggaaacaaaagtagagca |
6914648 |
T |
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| Q |
114 |
gagtcatggaatgattcattgtcagatggatgctcctaaggcttgttctgcaaatgatgattccttcattcctaatctaatgcatgggagaatttgccaa |
213 |
Q |
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| T |
6914647 |
gagtcatggaatgattcattgtcagatggatgctcctaaggcttgttctgcaaatgatgattccttcattcctaatctaatgcatgggagaatttgccaa |
6914548 |
T |
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| Q |
214 |
ggtactgttgtgatagctgatggtgaaaatgctggtgccaagtctcaaacaaatgctatagctttgaatgctgaaaaaattaaggaggaaattcctttgc |
313 |
Q |
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| T |
6914547 |
ggtactgttgtgatagctgatggtgaaaatgctggtgccaagtctcaaacaaatgctatagctttgaatgctgaaaaaattaaggaggaaattcctttgc |
6914448 |
T |
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| Q |
314 |
cccttggcactgagatgaccaaaatattagaccttgagtttg |
355 |
Q |
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| T |
6914447 |
cccttggcaccgagatgaccaaaatattagaccttgagtttg |
6914406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 154729 - 155066
Alignment:
| Q |
17 |
aaaagaagaaattgaaaaggcctaaactttccaatggagtttccgatggtgatgtgaaaagaaatgctgatgctgaaatggaaacaaaagtagagcagag |
116 |
Q |
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| T |
154729 |
aaaacaagaaatcgaaaaagcctaaactttctaatgtagtttcagagggtggagtgaaaccaaaagcagattctgaaatgggaacaaaaataggggagaa |
154828 |
T |
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| Q |
117 |
tcatggaatgattcattgtcagatggatgctcctaaggcttgttctgcaaatgatgattccttcattcctaatctaatgcatgggagaatttgccaaggt |
216 |
Q |
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| T |
154829 |
tcatggtatgatttatagtaagattggtggtcctaatgcttgcgctgcaaatgatttttt-ttaagttttaatctaatgtatgagaaaaattgctcaggc |
154927 |
T |
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| Q |
217 |
actgttgtgatagctgatggtgaaaatgctggtgccaagtctcaaacaaatgctatagctttgaatgctgaaaaaattaaggaggaaattcctttgcccc |
316 |
Q |
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||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| || |||| ||| |||||||||||||| |||||| |||| |||| |
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| T |
154928 |
actgttgtgataggagatggtgacaatgctggtgccaagtcccaaacaaatgctaaagttttgcatgaagaaaaaattaaggaagaaatttctttccccc |
155027 |
T |
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| Q |
317 |
ttggcactgagatgaccaaaatattagaccttgagtttg |
355 |
Q |
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| T |
155028 |
ttggcactgagatgactaaaatattagacattgagtttg |
155066 |
T |
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