View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_low_37 (Length: 333)

Name: NF16758_low_37
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_low_37
NF16758_low_37
[»] chr2 (33 HSPs)
chr2 (65-315)||(37989436-37989691)
chr2 (1-66)||(5574525-5574590)
chr2 (1-65)||(9058479-9058543)
chr2 (1-65)||(30915462-30915526)
chr2 (1-64)||(13438343-13438406)
chr2 (1-67)||(28863452-28863518)
chr2 (3-65)||(33436139-33436201)
chr2 (1-66)||(7465772-7465837)
chr2 (1-64)||(17473020-17473083)
chr2 (1-64)||(40701478-40701541)
chr2 (1-67)||(33436208-33436274)
chr2 (1-66)||(32505685-32505750)
chr2 (1-65)||(10249419-10249483)
chr2 (1-61)||(19930857-19930917)
chr2 (1-65)||(38882851-38882914)
chr2 (1-65)||(42257192-42257256)
chr2 (1-64)||(27864704-27864767)
chr2 (1-64)||(28381692-28381755)
chr2 (1-64)||(40613939-40614002)
chr2 (1-64)||(4060685-4060748)
chr2 (1-66)||(2533122-2533186)
chr2 (1-65)||(20700814-20700878)
chr2 (1-65)||(26891541-26891605)
chr2 (1-65)||(45097772-45097836)
chr2 (1-64)||(38732354-38732417)
chr2 (1-64)||(43490121-43490184)
chr2 (1-65)||(17823783-17823847)
chr2 (1-65)||(38273179-38273243)
chr2 (1-48)||(13365369-13365416)
chr2 (1-64)||(17820041-17820104)
chr2 (231-277)||(42866663-42866709)
chr2 (1-46)||(2997524-2997569)
chr2 (5-66)||(36168834-36168895)
[»] chr7 (36 HSPs)
chr7 (1-70)||(36361950-36362019)
chr7 (1-68)||(36362022-36362089)
chr7 (1-65)||(8080420-8080484)
chr7 (1-61)||(3783998-3784058)
chr7 (1-65)||(7389388-7389452)
chr7 (1-68)||(3434558-3434625)
chr7 (15-65)||(11044187-11044237)
chr7 (3-65)||(35468894-35468956)
chr7 (3-64)||(35137533-35137594)
chr7 (1-64)||(4999551-4999614)
chr7 (1-64)||(19329842-19329905)
chr7 (1-64)||(38267040-38267103)
chr7 (1-67)||(22343358-22343424)
chr7 (1-67)||(26296641-26296707)
chr7 (1-65)||(19436224-19436288)
chr7 (1-65)||(38837216-38837280)
chr7 (1-65)||(40957706-40957770)
chr7 (1-73)||(41915732-41915804)
chr7 (1-66)||(46033838-46033903)
chr7 (1-64)||(8238212-8238276)
chr7 (1-65)||(10343600-10343664)
chr7 (1-65)||(36208172-36208236)
chr7 (1-65)||(38044196-38044260)
chr7 (1-64)||(46374839-46374902)
chr7 (26-68)||(12310902-12310944)
chr7 (3-63)||(32951532-32951592)
chr7 (5-64)||(21234401-21234460)
chr7 (1-64)||(32564463-32564526)
chr7 (3-65)||(18207179-18207241)
chr7 (1-63)||(32045838-32045900)
chr7 (1-59)||(35522881-35522939)
chr7 (3-64)||(40846152-40846213)
chr7 (1-61)||(3694370-3694430)
chr7 (1-65)||(7727905-7727969)
chr7 (12-64)||(31735884-31735936)
chr7 (41-69)||(36361838-36361866)
[»] chr4 (28 HSPs)
chr4 (1-64)||(11511499-11511562)
chr4 (1-64)||(6034044-6034107)
chr4 (1-65)||(480484-480548)
chr4 (1-65)||(42044404-42044468)
chr4 (1-65)||(48183086-48183150)
chr4 (1-65)||(50052465-50052529)
chr4 (1-64)||(3481654-3481717)
chr4 (1-64)||(8343200-8343263)
chr4 (1-64)||(41236347-41236410)
chr4 (1-64)||(50526208-50526271)
chr4 (3-65)||(29239885-29239947)
chr4 (1-66)||(47986206-47986271)
chr4 (3-64)||(54473572-54473633)
chr4 (5-65)||(24995148-24995208)
chr4 (1-65)||(29547996-29548060)
chr4 (1-65)||(55475190-55475254)
chr4 (1-64)||(40574779-40574842)
chr4 (1-66)||(29234282-29234347)
chr4 (1-70)||(31910186-31910255)
chr4 (1-65)||(19670753-19670817)
chr4 (1-65)||(23608234-23608298)
chr4 (1-67)||(50813929-50813995)
chr4 (1-65)||(32766957-32767021)
chr4 (1-64)||(55079751-55079814)
chr4 (1-59)||(53352603-53352660)
chr4 (1-46)||(17983780-17983825)
chr4 (1-65)||(29977884-29977948)
chr4 (41-73)||(42044276-42044308)
[»] chr3 (28 HSPs)
chr3 (1-65)||(11095390-11095454)
chr3 (1-65)||(49607413-49607477)
chr3 (1-64)||(53982011-53982074)
chr3 (5-67)||(8956759-8956821)
chr3 (1-65)||(54868932-54868996)
chr3 (1-64)||(14623876-14623939)
chr3 (2-73)||(24699992-24700063)
chr3 (1-64)||(33644200-33644263)
chr3 (1-59)||(52629305-52629363)
chr3 (1-65)||(27714928-27714992)
chr3 (1-60)||(48587128-48587187)
chr3 (1-63)||(31456690-31456752)
chr3 (3-64)||(8076393-8076454)
chr3 (1-66)||(17470403-17470468)
chr3 (5-66)||(35536624-35536685)
chr3 (1-65)||(11347959-11348023)
chr3 (5-65)||(33118892-33118952)
chr3 (1-65)||(35965811-35965875)
chr3 (1-65)||(36707461-36707525)
chr3 (5-65)||(41189805-41189865)
chr3 (1-64)||(26141569-26141632)
chr3 (1-64)||(45058590-45058652)
chr3 (1-63)||(13898092-13898154)
chr3 (1-64)||(51419397-51419460)
chr3 (1-59)||(26754700-26754758)
chr3 (1-66)||(9562997-9563062)
chr3 (5-73)||(30801774-30801842)
chr3 (30-66)||(21746249-21746285)
[»] chr1 (27 HSPs)
chr1 (1-65)||(2581914-2581978)
chr1 (1-64)||(9474913-9474976)
chr1 (1-64)||(3000319-3000382)
chr1 (3-64)||(47452359-47452420)
chr1 (1-66)||(50630456-50630521)
chr1 (1-66)||(51898720-51898785)
chr1 (1-65)||(38595153-38595217)
chr1 (1-64)||(27564772-27564835)
chr1 (1-72)||(37926475-37926546)
chr1 (1-64)||(48716319-48716382)
chr1 (1-65)||(8346425-8346489)
chr1 (1-65)||(23597128-23597192)
chr1 (1-61)||(26274435-26274495)
chr1 (1-65)||(32813246-32813310)
chr1 (1-65)||(38632358-38632422)
chr1 (1-64)||(43132-43195)
chr1 (1-64)||(37649198-37649261)
chr1 (1-64)||(50591037-50591100)
chr1 (1-66)||(41758803-41758868)
chr1 (1-64)||(3302570-3302633)
chr1 (1-65)||(5959037-5959101)
chr1 (1-61)||(44548413-44548473)
chr1 (230-273)||(17492633-17492676)
chr1 (1-64)||(41608530-41608593)
chr1 (1-64)||(47748443-47748505)
chr1 (1-63)||(11152415-11152476)
chr1 (1-59)||(44453984-44454042)
[»] chr6 (19 HSPs)
chr6 (1-64)||(17598554-17598617)
chr6 (1-67)||(11427613-11427681)
chr6 (1-73)||(32869670-32869741)
chr6 (1-67)||(31976245-31976311)
chr6 (1-61)||(22880695-22880755)
chr6 (1-64)||(31953067-31953130)
chr6 (2-70)||(6209503-6209571)
chr6 (5-65)||(15832576-15832636)
chr6 (1-65)||(15990079-15990143)
chr6 (1-65)||(30341397-30341461)
chr6 (1-64)||(15508061-15508124)
chr6 (1-64)||(31109437-31109500)
chr6 (1-65)||(12732481-12732545)
chr6 (1-73)||(29857818-29857890)
chr6 (1-60)||(28536523-28536582)
chr6 (17-67)||(22422071-22422121)
chr6 (12-65)||(31110807-31110860)
chr6 (1-61)||(23128164-23128224)
chr6 (230-266)||(9993018-9993054)
[»] chr5 (25 HSPs)
chr5 (1-64)||(14831814-14831877)
chr5 (1-66)||(2740272-2740337)
chr5 (1-65)||(13811651-13811715)
chr5 (1-61)||(18520921-18520981)
chr5 (1-65)||(36732979-36733043)
chr5 (1-64)||(35785199-35785262)
chr5 (1-64)||(35943929-35943992)
chr5 (5-63)||(36875644-36875702)
chr5 (5-73)||(33149679-33149746)
chr5 (1-64)||(28177775-28177838)
chr5 (1-64)||(40145407-40145470)
chr5 (1-64)||(42414339-42414402)
chr5 (1-70)||(2252205-2252274)
chr5 (1-65)||(3921302-3921366)
chr5 (1-73)||(6679689-6679761)
chr5 (1-65)||(15409647-15409711)
chr5 (1-65)||(39688934-39688998)
chr5 (1-63)||(16327902-16327964)
chr5 (1-59)||(10356639-10356698)
chr5 (1-64)||(26720516-26720579)
chr5 (1-64)||(26990265-26990328)
chr5 (1-64)||(33825361-33825424)
chr5 (1-66)||(41470453-41470518)
chr5 (3-64)||(20073555-20073616)
chr5 (227-272)||(34397222-34397267)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-65)||(10146-10210)
[»] chr8 (27 HSPs)
chr8 (1-64)||(504158-504221)
chr8 (1-64)||(1179977-1180040)
chr8 (1-64)||(12831047-12831110)
chr8 (1-64)||(15197333-15197396)
chr8 (1-67)||(37038476-37038542)
chr8 (1-65)||(4854900-4854964)
chr8 (1-65)||(14547921-14547985)
chr8 (1-65)||(24307628-24307692)
chr8 (1-65)||(24307830-24307894)
chr8 (5-73)||(34012337-34012404)
chr8 (5-64)||(20074975-20075034)
chr8 (1-64)||(23122634-23122697)
chr8 (1-64)||(30479511-30479574)
chr8 (1-64)||(40423980-40424043)
chr8 (1-63)||(5957831-5957893)
chr8 (1-67)||(44507124-44507190)
chr8 (1-65)||(16383376-16383440)
chr8 (1-65)||(34307215-34307279)
chr8 (1-59)||(10621124-10621182)
chr8 (1-67)||(32032722-32032787)
chr8 (1-64)||(15048219-15048281)
chr8 (30-63)||(9122196-9122229)
chr8 (3-64)||(43414620-43414681)
chr8 (5-65)||(10284672-10284732)
chr8 (1-65)||(15258966-15259030)
chr8 (1-65)||(16056438-16056502)
chr8 (1-65)||(42221514-42221578)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-73)||(4020-4092)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-64)||(966-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-64)||(966-1029)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 65 - 315
Target Start/End: Original strand, 37989436 - 37989691
Alignment:
Q  65 tataaaaaacatgtatatatgtttaaagataacaataacaatcctttaaatgaatcttaattgactcgagagatttgtattgaaaatatgggccaatcat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37989436 tataaaaaacatgtatatatgtttaaagataacaataacaatcttttaaatgaatcttaattgactcgagagatatgtattgaaaatatgggccaatcat 37989535  T
Q  165 tattgaggtctaataccattttctttgtgattatgaacttggactacaaaaaacagataattattagaaaattactcttatcacttatgaaatggctcat 264  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  37989536 tattgaggtctgataccgttttctttgtgattatgagcttggactacaaaaaacagataattattagaaaattactcttgtcatttatgaaatggcacat 37989635  T
Q  265 tcactatatcagca-----taactgcagttcgacattttttagcggtagttaaatg 315  Q
    |||||||||||| |     ||||||| |||||||||||||||||||||||||||||    
T  37989636 tcactatatcagaagcagttaactgccgttcgacattttttagcggtagttaaatg 37989691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5574525 - 5574590
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  5574525 tcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 5574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9058543 - 9058479
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  9058543 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 9058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30915526 - 30915462
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  30915526 tcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 30915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13438406 - 13438343
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  13438406 tcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28863518 - 28863452
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  28863518 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattctat 28863452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 33436139 - 33436201
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  33436139 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 33436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7465772 - 7465837
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  7465772 tcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactcta 7465837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17473083 - 17473020
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  17473083 tcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40701541 - 40701478
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  40701541 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33436274 - 33436208
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||||||||||||||||| | | |||||||| |||||| ||||||||||||||||||||||    
T  33436274 tcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactctat 33436208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32505685 - 32505750
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||||    
T  32505685 tcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcta 32505750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10249419 - 10249483
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||||||    
T  10249419 tcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 10249483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19930857 - 19930917
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||    
T  19930857 tcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 19930917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38882851 - 38882914
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  38882851 tcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactct 38882914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42257256 - 42257192
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||||| |||||    
T  42257256 tcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactct 42257192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27864767 - 27864704
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  27864767 tcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 28381692 - 28381755
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||| || | | |||||||||||||||||||||||||||||||||||    
T  28381692 tcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40613939 - 40614002
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||| ||||    
T  40613939 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4060748 - 4060685
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||| | | ||||| |||||||||||||||||||||||||||||    
T  4060748 tcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2533186 - 2533122
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||| ||||||||||| ||||||||| ||||| |||||||||||||| ||||||    
T  2533186 tcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactcta 2533122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20700878 - 20700814
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||| || |||||||| | ||||||||| ||||| ||||||||||||||||||||    
T  20700878 tcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactct 20700814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26891541 - 26891605
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||| | || | |||||||||||||||||| ||||||||||| |||||    
T  26891541 tcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactct 26891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45097772 - 45097836
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| | |||||||||| |||| ||||||||||||||| ||| |||||||||| |||||    
T  45097772 tcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 45097836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38732417 - 38732354
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||||| |||| ||||| ||| ||||||||| |||||||||| ||||    
T  38732417 tcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43490184 - 43490121
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||||| || | ||||| ||||||||||||| |||||||||| ||||    
T  43490184 tcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17823847 - 17823783
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||  | | || ||||||||||||||| ||| ||||||||||||||||    
T  17823847 tcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactct 17823783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38273179 - 38273243
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||| ||||| | |||||||| |||||  |||||||||||||| |||||    
T  38273179 tcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactct 38273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 13365416 - 13365369
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgt 48  Q
    |||||||||| |||||||||||| || |||||||||| ||||||||||    
T  13365416 tcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgt 13365369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17820041 - 17820104
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||||| || | ||||||||||||  | |||||||||||||| ||||    
T  17820041 tcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Original strand, 42866663 - 42866709
Alignment:
Q  231 gaaaattactcttatcacttatgaaatggctcattcactatatcagc 277  Q
    ||||||||||||| ||  ||||||||| |||||||||||||||||||    
T  42866663 gaaaattactcttctcgtttatgaaattgctcattcactatatcagc 42866709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2997524 - 2997569
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggt 46  Q
    |||||||||| |||||||||||| || | |||||||||||||||||    
T  2997524 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 36168895 - 36168834
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||| |||||| || ||||||| ||||| || |||||| |||||||||||||| ||||||    
T  36168895 atttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactcta 36168834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36361950 - 36362019
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaa 70  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36361950 tcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctataaa 36362019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 36362089 - 36362022
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctata 68  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  36362089 tcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactctata 36362022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8080420 - 8080484
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  8080420 tcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3784058 - 3783998
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  3784058 tcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 3783998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7389452 - 7389388
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  7389452 tcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactct 7389388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3434625 - 3434558
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctata 68  Q
    |||| ||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  3434625 tcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctata 3434558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 11044237 - 11044187
Alignment:
Q  15 gggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 11044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 35468894 - 35468956
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||||    
T  35468894 agatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactct 35468956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 35137594 - 35137533
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  35137594 agatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4999551 - 4999614
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||||    
T  4999551 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19329905 - 19329842
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | | ||||||||||||||| |||||||||||||||||||    
T  19329905 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38267103 - 38267040
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | ||||| ||| |||||||||||||||||||||||||    
T  38267103 tcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22343424 - 22343358
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| |||||||    
T  22343424 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctat 22343358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26296707 - 26296641
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||||||||| ||| ||||| ||||||| ||||||||| |||||||||||||| |||||||    
T  26296707 tcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactctat 26296641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19436224 - 19436288
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||| | | ||||| ||||||||| ||||||||||||||||||||    
T  19436224 tcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactct 19436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38837280 - 38837216
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||| |||||  |||| | ||||||||||||||||||||||||||||||||||||    
T  38837280 tcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactct 38837216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40957770 - 40957706
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||| ||||||  | |||||||||||||| |||||||||||||||||||||    
T  40957770 tcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactct 40957706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41915804 - 41915732
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||||||| ||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||| |||||    
T  41915804 tcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctattaaaaa 41915732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 46033838 - 46033903
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||||||||||||| ||||| | ||||||||||||||  | |||||||||||| ||||||    
T  46033838 tcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactcta 46033903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8238276 - 8238212
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccaccta-agggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||||||||||| ||||||| |||||||||| ||||    
T  8238276 tcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10343600 - 10343664
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||    | |||| |||||||||||||||||||||||||||||||    
T  10343600 tcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactct 10343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36208236 - 36208172
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||| ||||| |||||||||||| | || |||| ||||||||||||||||||||||||| |||||    
T  36208236 tcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactct 36208172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38044260 - 38044196
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||| |||||| || | ||||||||||||||||||| |||||||||| |||||    
T  38044260 tcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 38044196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 46374839 - 46374902
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||| ||||| | | ||||||||||||| |||||||||||||| ||||    
T  46374839 tcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 12310944 - 12310902
Alignment:
Q  26 gatatattgccacctaagggtgtctatgtatcattactctata 68  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  12310944 gatatatttccacctaagggtgtctatgtatcataactctata 12310902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 32951532 - 32951592
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    |||||||| ||||| ||| ||||||| ||||| || ||||| |||||||||||||||||||    
T  32951532 agatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcattact 32951592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 21234460 - 21234401
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||| |||| |||||||||| | ||||| ||||||||| |||||||||||||| ||||    
T  21234460 atttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32564463 - 32564526
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||||| || | ||||||||||||||  ||| |||||||||| ||||    
T  32564463 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 18207241 - 18207179
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||| | ||||||||||  | | ||||||||||||||| |||||||||||||| |||||    
T  18207241 agatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactct 18207179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32045900 - 32045838
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    ||||||||||||||||||||| |   |||||||||||||||||  | | ||||||||||||||    
T  32045900 tcagatttttatgtgggtgtccagtaatatattgccacctaagaatatatatgtatcattact 32045838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35522939 - 35522881
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcat 59  Q
    |||||||||| ||||||||| ||| | | ||||||||| ||||| ||||||||||||||    
T  35522939 tcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 40846152 - 40846213
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||| ||||| |||||| || | ||||||||||||||| ||| |||||||||| ||||    
T  40846152 agatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 3694430 - 3694370
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||||||| ||| | | ||||| ||||||||||||| ||| ||||||||    
T  3694430 tcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcatta 3694370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7727969 - 7727905
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||  ||||||  | | |||| |||||||||||||| |||||||||| |||||    
T  7727969 tcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataactct 7727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 31735936 - 31735884
Alignment:
Q  12 tgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    ||||||||| ||||  | ||||||||||||||| |||||||||||||| ||||    
T  31735936 tgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactc 31735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 36361866 - 36361838
Alignment:
Q  41 aagggtgtctatgtatcattactctataa 69  Q
    |||||||||||||||||||||||||||||    
T  36361866 aagggtgtctatgtatcattactctataa 36361838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 11511499 - 11511562
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  11511499 tcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6034107 - 6034044
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  6034107 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 480484 - 480548
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  480484 tcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactct 480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42044404 - 42044468
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  42044404 tcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactct 42044468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48183086 - 48183150
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  48183086 tcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactct 48183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50052465 - 50052529
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  50052465 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 50052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3481717 - 3481654
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||  | ||||||||||||| |||||||||||||||||||||    
T  3481717 tcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8343200 - 8343263
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||| ||||    
T  8343200 tcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41236410 - 41236347
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||| | | |||||||||||||||||||||||||||||||||||    
T  41236410 tcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50526208 - 50526271
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | ||||||||||||| | |||||||||||||||||||    
T  50526208 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 29239947 - 29239885
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||||||    
T  29239947 agatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactct 29239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 47986271 - 47986206
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||||||| ||||||    
T  47986271 tcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactcta 47986206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 54473572 - 54473633
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||| ||||||||||||| | | ||||| |||||||||||||||||||||||||||||    
T  54473572 agatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 24995148 - 24995208
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||||||||| | |||||||| ||||||||||| || ||||||||||||    
T  24995148 atttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactct 24995208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29547996 - 29548060
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| |||| ||||||||||||||| ||| |||||||||| |||||    
T  29547996 tcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactct 29548060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 55475254 - 55475190
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| ||| |||||||||| |||||    
T  55475254 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactct 55475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40574842 - 40574779
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||| |||||||||| |||||||||||||| ||||    
T  40574842 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29234282 - 29234347
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||  ||| ||||||| | |||||||| ||||||||||||||||||||||||||||    
T  29234282 tcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcattactcta 29234347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31910255 - 31910186
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaa 70  Q
    |||||||||| ||||||||||||||  | ||||| ||||||||| |||||||||||||| |||| |||||    
T  31910255 tcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactcaataaa 31910186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19670753 - 19670817
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||| ||||||| || | ||||||||||||||||||| |||||||||| |||||    
T  19670753 tcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 19670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23608298 - 23608234
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||| | | ||||| || |||||||||||||| ||||||||||||    
T  23608298 tcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactct 23608234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 50813929 - 50813995
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||| |||||||||||| || | |||| ||||||||| |||| |||||||||| |||||||    
T  50813929 tcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactctat 50813995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32767021 - 32766957
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| | |||||||||| || | |||||||||||||| |||| |||||||||| |||||    
T  32767021 tcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactct 32766957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 55079751 - 55079814
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| | ||||||||||  | | ||||||||||||||||||| |||||||||| ||||    
T  55079751 tcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53352603 - 53352660
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcat 59  Q
    |||||||||| ||| ||||| |||| || |||||| |||||||||||||||||||||||    
T  53352603 tcagatttttgtgtaggtgttaaagaatgtattgc-acctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17983780 - 17983825
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggt 46  Q
    |||||||||| |||||||||||| || | |||||||||||||||||    
T  17983780 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 17983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29977948 - 29977884
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||| || || | |||||||||||| || | | ||||||||||||||||    
T  29977948 tcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcattactct 29977884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 42044308 - 42044276
Alignment:
Q  41 aagggtgtctatgtatcattactctataaaaaa 73  Q
    ||||||||||||||||||||||||| |||||||    
T  42044308 aagggtgtctatgtatcattactctttaaaaaa 42044276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11095390 - 11095454
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  11095390 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 11095454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 49607477 - 49607413
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  49607477 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 49607413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 53982074 - 53982011
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  53982074 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 8956821 - 8956759
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  8956821 atttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactctat 8956759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 54868932 - 54868996
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  54868932 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactct 54868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14623876 - 14623939
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||||    
T  14623876 tcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 24699992 - 24700063
Alignment:
Q  2 cagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    ||||||||||||||||||||||| | | |||||||| |||||| ||||||||||||||||||||| ||||||    
T  24699992 cagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactctaaaaaaaa 24700063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33644263 - 33644200
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||||    
T  33644263 tcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52629363 - 52629305
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcat 59  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  52629363 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27714928 - 27714992
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | |||| |||||||| ||||||||||||||||||||||    
T  27714928 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactct 27714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48587128 - 48587187
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatt 60  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||    
T  48587128 tcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31456752 - 31456690
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    |||||||||| ||||||||||||||| | ||||||| |||| |||||||||||||||||||||    
T  31456752 tcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcattact 31456690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 8076454 - 8076393
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||| ||||||||||||||| | || |||||||||||||||| |||||||||||||||    
T  8076454 agatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17470468 - 17470403
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||||||| ||| | | ||||||||||||| |||||||||||||||||||||||    
T  17470468 tcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactcta 17470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 35536685 - 35536624
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||||||||||||| | | ||||||||| ||||| |||||||||||||||||||||    
T  35536685 atttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactcta 35536624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11347959 - 11348023
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||| ||||||||||| ||||| ||||||||| |||||||||||||| |||||    
T  11347959 tcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactct 11348023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 33118892 - 33118952
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||||||||||| |||||    
T  33118892 atttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactct 33118952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35965811 - 35965875
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||||||||||||||| ||||  ||| ||||| ||| ||||||||||||||||    
T  35965811 tcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactct 35965875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36707461 - 36707525
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||| ||||||||| | ||||| ||||||||||| ||||||||||||||||||    
T  36707461 tcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactct 36707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 41189805 - 41189865
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||| |||||    
T  41189805 atttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactct 41189865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 26141569 - 26141632
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||| ||||| | ||||||||||||||| |||||||||||||| ||||    
T  26141569 tcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 45058590 - 45058652
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||| ||||    
T  45058590 tcagatttttatgtgggtgtcaaggg-tgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 13898092 - 13898154
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    ||||||||||||||||||||||| || | ||||||||||||||| ||| ||| ||||||||||    
T  13898092 tcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcattact 13898154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51419397 - 51419460
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||| ||||||| ||||| || |||||| |||||||||||||| ||||    
T  51419397 tcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26754758 - 26754700
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcat 59  Q
    |||||||||| ||||| |||| |||| | |||||||||||||||||||||||| |||||    
T  26754758 tcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9563062 - 9562997
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||||| ||| ||||||||| | ||||| || |||| ||||| |||||||||||||||||    
T  9563062 tcagatttttatatggatgtcaaaggttgtattgtcatctaatggtgtttatgtatcattactcta 9562997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 30801774 - 30801842
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||| ||||||| ||||||| | ||||  ||||||||||||||||||||||||| ||| | ||||||    
T  30801774 atttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcattgctcaaaaaaaaa 30801842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 21746249 - 21746285
Alignment:
Q  30 tattgccacctaagggtgtctatgtatcattactcta 66  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  21746249 tattgccacctaaggatgtatatgtatcattactcta 21746285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2581978 - 2581914
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  2581978 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 2581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9474913 - 9474976
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  9474913 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3000382 - 3000319
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  3000382 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 47452359 - 47452420
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  47452359 agatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 50630521 - 50630456
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| |||||||  |||||||| ||||||||||||||||| |||||||||||||||||||    
T  50630521 tcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactcta 50630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51898720 - 51898785
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||||||||||||| | ||||||||||||| | |||||||||||||||||||||    
T  51898720 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactcta 51898785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38595217 - 38595153
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  38595217 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactct 38595153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27564772 - 27564835
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | | ||||||||||||||| |||||||||||||||||||    
T  27564772 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 37926475 - 37926546
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaa 72  Q
    |||||||||||||||||||| ||| ||| ||||||||||||| | | |||||||||||| ||||||||||||    
T  37926475 tcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactctataaaaa 37926546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48716319 - 48716382
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||| | | |||||||||||||||||||||||||||||||||||    
T  48716319 tcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8346425 - 8346489
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||| | | ||||||||||||| |||| |||||||||||||||||    
T  8346425 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactct 8346489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23597128 - 23597192
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||||| ||||||  | ||||||||||||| | ||||||||||||||||||||    
T  23597128 tcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactct 23597192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26274495 - 26274435
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||| ||||||| ||| ||||||||| ||||||||||||||||||||||    
T  26274495 tcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcatta 26274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32813310 - 32813246
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||| ||||| | ||||||||||||||| |||||||||||||| |||||    
T  32813310 tcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 32813246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38632358 - 38632422
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||| ||| ||| | | ||||||||||||||||||||||||||||||||||||    
T  38632358 tcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43195 - 43132
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||||| ||||| | ||||||  |||||||||||||||||||    
T  43195 tcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37649261 - 37649198
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||  | ||||||||||||| | |||||||||||||||||||    
T  37649261 tcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 50591037 - 50591100
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| ||||    
T  50591037 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41758868 - 41758803
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||| ||||||||| | ||||||||  ||| |||||||||||||||||||||||    
T  41758868 tcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactcta 41758803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3302570 - 3302633
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||| | | |||||||| ||||||||| ||| |||||||||||||||    
T  3302570 tcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattactc 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5959037 - 5959101
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||  | | ||||||||| ||||||||| |||||||||| |||||    
T  5959037 tcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactct 5959101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44548413 - 44548473
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||||| ||||| | | ||||||||||||| | ||||||||||||||||    
T  44548413 tcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 17492633 - 17492676
Alignment:
Q  230 agaaaattactcttatcacttatgaaatggctcattcactatat 273  Q
    |||||||||||||| |||||||||||||  ||||||||||||||    
T  17492633 agaaaattactcttctcacttatgaaatttctcattcactatat 17492676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41608530 - 41608593
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||| ||||||| || | ||||||||||||||| ||| |||||||||| ||||    
T  41608530 tcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47748505 - 47748443
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||||| |||||||||| || | ||||||||||||||||| | |||||||||| ||||    
T  47748505 tcagatttttatatgggtgtcaaggg-tgtattgccacctaagggtatttatgtatcataactc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11152415 - 11152476
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    |||||||||| ||||| |||| |||| | ||||||||||||| ||||||||||| ||||||||    
T  11152415 tcagatttttgtgtggatgtcgaagggtgtattgccacctaa-ggtgtctatgtttcattact 11152476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44454042 - 44453984
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcat 59  Q
    |||||||||| ||||||| ||||  ||| ||||||||| ||| ||||||||||||||||    
T  44454042 tcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcat 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17598617 - 17598554
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17598617 tcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11427681 - 11427613
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccaccta--agggtgtctatgtatcattactctat 67  Q
    |||||||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  11427681 tcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactctat 11427613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32869741 - 32869670
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||    
T  32869741 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactc-ataaaaaa 32869670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31976311 - 31976245
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||    
T  31976311 tcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactctat 31976245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22880695 - 22880755
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    ||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  22880695 tcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 22880755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31953067 - 31953130
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||| || | ||||||||||||||| ||||||| |||||||||||    
T  31953067 tcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 6209503 - 6209571
Alignment:
Q  2 cagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaa 70  Q
    ||||||||| |||| ||||||||   | |||||||||||||||||||||||||||||||||||| ||||    
T  6209503 cagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctttaaa 6209571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 15832636 - 15832576
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||    
T  15832636 atttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactct 15832576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15990079 - 15990143
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| |||||    
T  15990079 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 15990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30341397 - 30341461
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| |||||    
T  30341397 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 30341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15508061 - 15508124
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| ||||    
T  15508061 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31109437 - 31109500
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||||| | |||||||||||||||||||||||  ||||||||||    
T  31109437 tcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcattactc 31109500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12732545 - 12732481
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| |  ||||||||||| ||||  ||||||||||||||||||||    
T  12732545 tcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactct 12732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29857890 - 29857818
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||||||| ||||||||| ||| | | |||||||| |||| ||||||||||||||||||||| | ||||||    
T  29857890 tcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactccaaaaaaaa 29857818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28536523 - 28536582
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatt 60  Q
    |||||||||| |||||||||||| || | ||||||||||||||| ||| |||||||||||    
T  28536523 tcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatt 28536582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 22422071 - 22422121
Alignment:
Q  17 gtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||  ||| ||||||||||||||| ||||||||||||||||||||||    
T  22422071 gtgtcaagagatctattgccacctaaggatgtctatgtatcattactctat 22422121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 31110807 - 31110860
Alignment:
Q  12 tgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||| |||||||||| | ||||||||||||||| |||||||||||||| |||||    
T  31110807 tgtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactct 31110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23128164 - 23128224
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||||||||||||||| ||||  ||| ||| ||||||||| ||||||||    
T  23128164 tcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcatta 23128224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 9993018 - 9993054
Alignment:
Q  230 agaaaattactcttatcacttatgaaatggctcattc 266  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  9993018 agaaaattactcttctcacttatggaatggctcattc 9993054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14831877 - 14831814
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  14831877 tcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2740337 - 2740272
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  2740337 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactcta 2740272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13811715 - 13811651
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||    
T  13811715 tcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactct 13811651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18520921 - 18520981
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcatta 61  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  18520921 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 18520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36732979 - 36733043
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  36732979 tcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactct 36733043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35785262 - 35785199
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  35785262 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35943929 - 35943992
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| ||||    
T  35943929 tcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 36875644 - 36875702
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattact 36875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 33149679 - 33149746
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||    
T  33149679 atttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc-ataaaaaa 33149746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28177838 - 28177775
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||| ||||    
T  28177838 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 40145470 - 40145407
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||| ||||| | |||||||||||||||||||||||||||||||||||    
T  40145470 tcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42414339 - 42414402
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | ||||||||||||  |||||||||||||||||||||    
T  42414339 tcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2252205 - 2252274
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaa 70  Q
    |||||||||| |||||||||||| || | ||||||||||||||| ||| |||||||||| ||||||||||    
T  2252205 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactctataaa 2252274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3921302 - 3921366
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| |||||    
T  3921302 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 3921366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6679761 - 6679689
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||||||| ||||||||||||| | | ||||||||||||| | |||||||||||||| |||||| ||||||    
T  6679761 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactctaaaaaaaa 6679689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15409647 - 15409711
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||||| || ||||| ||||||||| |||||||||||||| |||||    
T  15409647 tcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactct 15409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39688934 - 39688998
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| |||| ||||||||| ||||||||| |||||||||| |||||    
T  39688934 tcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactct 39688998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 16327964 - 16327902
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| | | ||| ||||||||||    
T  16327964 tcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcattact 16327902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10356698 - 10356639
Alignment:
Q  1 tcagatttttatgtgggtgtcaaagg-atatattgccacctaagggtgtctatgtatcat 59  Q
    |||||||||| |||||||||||| || || ||||||||||||||| ||||||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26720579 - 26720516
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||| ||||| ||||| | ||||||||||||||| |||||||||||||| ||||    
T  26720579 tcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 26990328 - 26990265
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||| ||||| ||||| | ||||||||||||||| |||||||||||||| ||||    
T  26990328 tcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33825361 - 33825424
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||||||||||||| |  | ||||||||||||||  |||||||| ||||||||||    
T  33825361 tcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41470453 - 41470518
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactcta 66  Q
    |||||||||||| ||  | | ||||||| ||||||||||||| ||||||||||||| |||||||||    
T  41470453 tcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactcta 41470518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 20073555 - 20073616
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    ||||||||||||| |||||||||| | ||||| || |||| | ||||||| |||||||||||    
T  20073555 agatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattactc 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 34397267 - 34397222
Alignment:
Q  227 attagaaaattactcttatcacttatgaaatggctcattcactata 272  Q
    ||||||||||||||||| |||| |||||||| | ||||||||||||    
T  34397267 attagaaaattactcttctcacatatgaaattgttcattcactata 34397222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10146 - 10210
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  10146 tcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactct 10210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 504158 - 504221
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  504158 tcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1179977 - 1180040
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  1179977 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12831110 - 12831047
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  12831110 tcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 15197396 - 15197333
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  15197396 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37038542 - 37038476
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||| ||||||||||||||| | ||||||||||||| | ||||||||||||||||||||||    
T  37038542 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactctat 37038476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4854900 - 4854964
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||| ||||| ||||| | ||||||||||||||| ||||||||||||||||||||    
T  4854900 tcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactct 4854964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14547985 - 14547921
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| ||||||||||||| | | |||||||||||||||||||||||||||| |||||||    
T  14547985 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactct 14547921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24307692 - 24307628
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||| |||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactct 24307628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24307830 - 24307894
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||||| |||||    
T  24307830 tcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 24307894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 34012337 - 34012404
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||| ||||||||    
T  34012337 atttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc-ataaaaaa 34012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 20074975 - 20075034
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||||||||  | ||||||||||||||| |||||||||||||||||||    
T  20074975 atttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 23122634 - 23122697
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||||||||||    
T  23122634 tcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30479511 - 30479574
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||| ||||    
T  30479511 tcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

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Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40423980 - 40424043
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||||| | ||||||||||||||||| |||||||||||||||||    
T  40423980 tcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

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Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5957893 - 5957831
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattact 63  Q
    |||||||||| ||||||||||||||| | ||||||||||||||  ||||||||||||||||||    
T  5957893 tcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcattact 5957831  T

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Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44507124 - 44507190
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||| ||||||||| ||||  | |||| |||||||||||||||||||||||||||||||||    
T  44507124 tcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactctat 44507190  T

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Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16383440 - 16383376
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| |||||    
T  16383440 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 16383376  T

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Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34307279 - 34307215
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| || | ||||||||||||||||||| |||||||||| |||||    
T  34307279 tcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 34307215  T

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Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10621124 - 10621182
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcat 59  Q
    |||||||||| ||||||||||||||| | |||| |||||||||| ||||||||||||||    
T  10621124 tcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

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Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32032787 - 32032722
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctat 67  Q
    |||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||||||| |||||||    
T  32032787 tcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactctat 32032722  T

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Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15048219 - 15048281
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||||| ||||| ||||||||| | ||||||||||||||| |||||||||||||| ||||    
T  15048219 tcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

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Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 9122229 - 9122196
Alignment:
Q  30 tattgccacctaagggtgtctatgtatcattact 63  Q
    ||||||||||||||||||||||||||||||||||    
T  9122229 tattgccacctaagggtgtctatgtatcattact 9122196  T

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Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 43414620 - 43414681
Alignment:
Q  3 agatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||||||| ||||||||||||||| | | |||||| |||||| |||||||||||||| ||||    
T  43414620 agatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactc 43414681  T

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Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 10284672 - 10284732
Alignment:
Q  5 atttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||| ||||||||||||||  | ||||| ||| |||||||||||||||||||| |||||    
T  10284672 atttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactct 10284732  T

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Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15258966 - 15259030
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||||||||| |||| | |||| |||||||| ||||| || |||||||||||| |||||    
T  15258966 tcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataactct 15259030  T

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Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16056438 - 16056502
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||||| |||| ||||| ||| ||||| ||| |||||||||| |||||    
T  16056438 tcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactct 16056502  T

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Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42221578 - 42221514
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactct 65  Q
    |||||||||| |||||||||| | | || ||||| ||||||||| ||| ||||||||||||||||    
T  42221578 tcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcattactct 42221514  T

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Target: scaffold0237 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4092 - 4020
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactctataaaaaa 73  Q
    |||||||||| ||||||||| ||| | | |||||||| |||| ||||||||||||||||||||| | ||||||    
T  4092 tcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactccaaaaaaaa 4020  T

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Target: scaffold1268 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 966 - 1029
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||| ||||| ||||| ||| ||||| | ||||||||||||| | |||||||||||||||||||    
T  966 tcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

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Target: scaffold1267 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 966 - 1029
Alignment:
Q  1 tcagatttttatgtgggtgtcaaaggatatattgccacctaagggtgtctatgtatcattactc 64  Q
    |||| ||||| ||||| ||| ||||| | ||||||||||||| | |||||||||||||||||||    
T  966 tcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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