View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_41 (Length: 298)
Name: NF16758_low_41
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 10378869 - 10379119
Alignment:
| Q |
1 |
aaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaatgtta |
100 |
Q |
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| T |
10378869 |
aaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgtta |
10378968 |
T |
|
| Q |
101 |
ggcttgtttgcaagaattgaagttccttccttaccactgagagaatccttcaaataaaggatactagatgccaaaatctattgttgtttgtctttggtgc |
200 |
Q |
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| T |
10378969 |
ggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactagatgccaaaatctatggttgtttgtgtttggtgc |
10379068 |
T |
|
| Q |
201 |
tctcatacaacccttttctgatttagattatcatgttaacatgatacatgc |
251 |
Q |
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| T |
10379069 |
tctcatacaacccttttctgatttagattatcatgttaacatgatacatgc |
10379119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 10367344 - 10367500
Alignment:
| Q |
1 |
aaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaatgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10367344 |
aaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaatgtta |
10367443 |
T |
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| Q |
101 |
ggcttgtttgcaagaattgaagttccttccttaccactgagagaatccttcaaataa |
157 |
Q |
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| T |
10367444 |
ggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
11 |
ttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaagaatgttaggcttgtttg |
110 |
Q |
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|||||||| |||| | | ||||||||||||| |||| ||||||||| |||||||||||||| || ||| |||| ||||| | |||| ||||||||| || |
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| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
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| Q |
111 |
caagaattgaagttcctt |
128 |
Q |
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||| || || |||||||| |
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| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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