View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_low_43 (Length: 276)

Name: NF16758_low_43
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_low_43
NF16758_low_43
[»] chr5 (2 HSPs)
chr5 (18-269)||(23224676-23224927)
chr5 (24-94)||(27598603-27598673)
[»] chr7 (1 HSPs)
chr7 (32-183)||(5298995-5299151)
[»] chr4 (4 HSPs)
chr4 (24-115)||(11865261-11865352)
chr4 (16-115)||(15841554-15841653)
chr4 (19-94)||(19564777-19564852)
chr4 (16-67)||(24608675-24608726)
[»] chr6 (2 HSPs)
chr6 (16-113)||(10374899-10374995)
chr6 (24-115)||(1103456-1103546)
[»] chr2 (7 HSPs)
chr2 (72-115)||(17395490-17395533)
chr2 (16-118)||(25867091-25867192)
chr2 (18-74)||(8163114-8163170)
chr2 (24-66)||(15324986-15325028)
chr2 (16-66)||(31067624-31067674)
chr2 (16-65)||(18593547-18593596)
chr2 (42-94)||(8941240-8941292)
[»] chr1 (2 HSPs)
chr1 (16-94)||(4650350-4650428)
chr1 (16-92)||(49086730-49086806)
[»] chr3 (1 HSPs)
chr3 (16-45)||(19584048-19584077)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 23224927 - 23224676
Alignment:
Q  18 gtgacattgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgttatcttgtgttgtcacgatgttt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||    
T  23224927 gtgacattgcactgaactgggttaacaaataacttgtgtcatttactttcagcttttatctttaagttgctatttgttatcttgtgttgtcatgatgttt 23224828  T
Q  118 tccttctcgacattctgcttgtcctgacatcatgttcaacatctttctgtacgtgccagaatttcagttttaaacaaagaattgaaagtatagtatgctg 217  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  23224827 tccttctcgacattctgcttgtcctgacatcatgttcgacaactttctgtacgtgccaaaatttcagttttaaacagagaattgaaagtatagtatgctg 23224728  T
Q  218 caagacttttaggtatagatcaacaacaatagtcaagtcaaaagtatctgtg 269  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  23224727 caagacttctaggcatagagcaacaacaatagtcaagtcaaaagtatctgtg 23224676  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 27598673 - 27598603
Alignment:
Q  24 ttgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgt 94  Q
    |||||| || |||||||||||| |||| |||||||||| ||||| |||||| | ||||| |||||||||||    
T  27598673 ttgcaccgatctgggttaacaaataacgtgtgtcatttgctttcggcttttatttttaatttgttatttgt 27598603  T

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Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 5299151 - 5298995
Alignment:
Q  32 aactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgttatcttgtgttgtcacgatgttt-----tccttctcg 126  Q
    |||||||||||| | ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| |     |||||||||    
T  5299151 aactgggttaacgaataacttgtgccatttactttcagcttttatctttaagttgttatttgttatcttatgttgtcacaatgtcttgacatccttctcg 5299052  T
Q  127 acattctgcttgtcctgacatcatgttcaacatctttctgtacgtgccagaatttca 183  Q
    ||||||||||||| |||||||||||||| |||||||||| ||| ||| | |||||||    
T  5299051 acattctgcttgttctgacatcatgttcgacatctttctttacatgcaataatttca 5298995  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 11865261 - 11865352
Alignment:
Q  24 ttgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgttatcttgtgttgtcacgatgt 115  Q
    |||||| ||||||||||||||| ||||||||| | ||||||||  || ||| |||||||||||||||||||||| |||||||||||||||||    
T  11865261 ttgcaccgaactgggttaacaaataacttgtgccttttactttttgcctttatctttaagttgttatttgttattttgtgttgtcacgatgt 11865352  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 15841653 - 15841554
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttactttcag-cttttgtctttaagttgttatttgttatcttgtgttgtcacgatg 114  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||| | | ||||  | ||||||||||| ||||||||| |||||||||| ||||    
T  15841653 aggtgacattgcactgaactgggttaacaaattacttgtgtcttttacttcctgcctttattatttaagttgttgtttgttatc-tgtgttgtcatgatg 15841555  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 19564852 - 19564777
Alignment:
Q  19 tgacattgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgt 94  Q
    |||| ||||||  |||||||||||||| ||||  ||| | ||||||||| || ||| |||||||||||||||||||    
T  19564852 tgacgttgcaccaaactgggttaacaaataacccgtgccttttactttctgcctttatctttaagttgttatttgt 19564777  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 24608726 - 24608675
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttactttc 67  Q
    ||||||| |||||| ||||||||||||||| ||||||||| | |||||||||    
T  24608726 aggtgacgttgcaccgaactgggttaacaaataacttgtgccttttactttc 24608675  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 10374899 - 10374995
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgttatcttgtgttgtcacgat 113  Q
    ||||||| ||||||| |||||||||||| | || |||||||||||||||||| ||  ||  ||||||||||||| ||||||| ||||||||| |||||    
T  10374899 aggtgacgttgcactaaactgggttaactaataccttgtgtcatttactttctgcaatttactttaagttgttaattgttat-ttgtgttgttacgat 10374995  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 1103456 - 1103546
Alignment:
Q  24 ttgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgttatcttgtgttgtcacgatgt 115  Q
    |||||| |||||||||||| || ||||||||| | |||||||||||||||| |||   | | |||||||||||| |||||||||||||||||    
T  1103456 ttgcaccgaactgggttaaaaaataacttgtgccttttactttcagcttttatctactattagttatttgttat-ttgtgttgtcacgatgt 1103546  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 17395533 - 17395490
Alignment:
Q  72 tttgtctttaagttgttatttgttatcttgtgttgtcacgatgt 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  17395533 tttgtctttaagttgttatttgttattttgtgttgtcacgatgt 17395490  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 25867192 - 25867091
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgttatcttgtgttgtcacgatgt 115  Q
    ||||||| ||||||  ||||  ||||| || ||||||||||| |||||||| ||| ||| ||||||  || ||||||||||| ||||||||||| |||||    
T  25867192 aggtgacgttgcaccaaactaagttaagaaataacttgtgtcttttacttttagcatttatctttagttttttatttgttat-ttgtgttgtcatgatgt 25867094  T
Q  116 ttt 118  Q
    |||    
T  25867093 ttt 25867091  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 8163114 - 8163170
Alignment:
Q  18 gtgacattgcactgaactgggttaacaactaacttgtgtcatttactttcagctttt 74  Q
    |||||||||||  |||||| |||||||| |||||||||||  |||||||||||||||    
T  8163114 gtgacattgcatcgaactgtgttaacaaataacttgtgtctcttactttcagctttt 8163170  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 15325028 - 15324986
Alignment:
Q  24 ttgcactgaactgggttaacaactaacttgtgtcatttacttt 66  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||    
T  15325028 ttgcaccgaactgggttaacaaataacttgtgccatttacttt 15324986  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 31067624 - 31067674
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttacttt 66  Q
    ||||||| ||||||  |||| ||||||||| ||||||||||||||||||||    
T  31067624 aggtgacgttgcaccaaactaggttaacaaataacttgtgtcatttacttt 31067674  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 18593596 - 18593547
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttactt 65  Q
    |||||||||||||| ||||||||||||||| ||  |||||| ||||||||    
T  18593596 aggtgacattgcaccgaactgggttaacaaatactttgtgttatttactt 18593547  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 8941292 - 8941240
Alignment:
Q  42 acaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgt 94  Q
    |||| |||||||||  ||||||||||||||||| ||||||  |||||||||||    
T  8941292 acaaataacttgtgcaatttactttcagcttttatctttagtttgttatttgt 8941240  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 4650350 - 4650428
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttatttgt 94  Q
    ||||||| ||||||  |||| | ||||||| |||||||||||||||||||| ||| ||| ||||||  ||| |||||||    
T  4650350 aggtgacgttgcacataactagattaacaaataacttgtgtcatttacttttagcctttatctttagtttgctatttgt 4650428  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 49086730 - 49086806
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaactaacttgtgtcatttactttcagcttttgtctttaagttgttattt 92  Q
    ||||||| |||||| |||||||||||||||   ||||||||| ||||||||| |  ||| |  ||||||||||||||    
T  49086730 aggtgacgttgcaccgaactgggttaacaaacgacttgtgtcttttactttctgtctttattattaagttgttattt 49086806  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 19584048 - 19584077
Alignment:
Q  16 aggtgacattgcactgaactgggttaacaa 45  Q
    ||||||||||||||||||||||||||||||    
T  19584048 aggtgacattgcactgaactgggttaacaa 19584077  T

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