View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_49 (Length: 253)
Name: NF16758_low_49
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 35031279 - 35031063
Alignment:
| Q |
16 |
atttttacattcataaagaaaaatccaaataaaaatgtagatttggcaaacatcctgatcatcagaatttattccattgtgcaattgttccgtcttggtt |
115 |
Q |
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| T |
35031279 |
atttttacattcataaagaaaaatccaaataaaaatgtagatttggcaaacatcctgatcatcagaatttattccattgtgcaattgttccgtcttggtt |
35031180 |
T |
|
| Q |
116 |
aactgatgaatgaataaatgaatgatgttgattgcatttggaagggaactcctctgattacaccatgtgccatgtggattatttgtgcattatttataaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35031179 |
aactgatgaatgaataaatgaatgatgttgattgcatttggaagggaactcctctgattacaccatgtgccatgtggattatttgtgcattatttataaa |
35031080 |
T |
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| Q |
216 |
ttattgttataaattat |
232 |
Q |
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||||||||||||||||| |
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| T |
35031079 |
ttattgttataaattat |
35031063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 36857075 - 36857278
Alignment:
| Q |
16 |
atttttacattcataaagaaaaatccaaataaaaatgtagatttggcaaacatcctgatcatcagaatttattccattgtgcaattgttccgtcttggtt |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
36857075 |
atttttacattcataaagaaaaatccaaatgaaaatgtagatttggcaaacatcctgatcatgagaatttactccattgtgcacttgttccgtcttggtt |
36857174 |
T |
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| Q |
116 |
aactgatgaatgaataaatgaatgatgttgattgcatttggaagggaactcctctgattacaccatgtgccatgtggattatttgtgca-ttatttataa |
214 |
Q |
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| T |
36857175 |
aactg------------atgaatgacgttgattgcatttggaagggaattcctctga-tataccatgtgccatgtggattatttgtgcatttatttataa |
36857261 |
T |
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| Q |
215 |
attattgttataaatta |
231 |
Q |
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||||||||||||||||| |
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| T |
36857262 |
attattgttataaatta |
36857278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 11325889 - 11325917
Alignment:
| Q |
224 |
ataaattatgagaaatgatatttgtacaa |
252 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11325889 |
ataaattatgagaaatgatatttgtacaa |
11325917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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