View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16758_low_5 (Length: 654)

Name: NF16758_low_5
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16758_low_5
NF16758_low_5
[»] chr8 (26 HSPs)
chr8 (243-639)||(6097594-6098000)
chr8 (136-210)||(6097371-6097445)
chr8 (440-607)||(6179771-6179938)
chr8 (24-125)||(38289226-38289326)
chr8 (470-618)||(6047170-6047318)
chr8 (24-125)||(4259863-4259963)
chr8 (24-125)||(41454818-41454918)
chr8 (36-125)||(41845432-41845520)
chr8 (38-125)||(36103927-36104013)
chr8 (24-125)||(1032574-1032674)
chr8 (37-130)||(38544929-38545020)
chr8 (27-125)||(34037942-34038039)
chr8 (440-593)||(6188545-6188698)
chr8 (40-125)||(36587657-36587741)
chr8 (24-120)||(39104616-39104710)
chr8 (44-119)||(45536728-45536802)
chr8 (24-134)||(3311435-3311544)
chr8 (27-125)||(38063981-38064078)
chr8 (24-125)||(22652687-22652787)
chr8 (25-120)||(5904366-5904460)
chr8 (84-123)||(16973028-16973067)
chr8 (84-135)||(29114096-29114147)
chr8 (43-125)||(8350440-8350521)
chr8 (27-125)||(19733063-19733160)
chr8 (84-125)||(13906676-13906717)
chr8 (92-125)||(40103526-40103559)
[»] chr4 (28 HSPs)
chr4 (24-134)||(16556446-16556555)
chr4 (24-125)||(51974751-51974851)
chr4 (21-125)||(45847914-45848017)
chr4 (36-135)||(43362171-43362269)
chr4 (24-125)||(11491210-11491310)
chr4 (24-125)||(40406951-40407052)
chr4 (24-135)||(36993035-36993145)
chr4 (26-125)||(46283126-46283224)
chr4 (24-120)||(45355709-45355803)
chr4 (24-120)||(45369450-45369544)
chr4 (36-125)||(2832074-2832162)
chr4 (29-125)||(35909024-35909120)
chr4 (24-125)||(42154570-42154670)
chr4 (24-125)||(50815711-50815811)
chr4 (37-117)||(23448985-23449063)
chr4 (44-125)||(27862842-27862922)
chr4 (24-125)||(43084451-43084551)
chr4 (41-125)||(8716398-8716481)
chr4 (36-124)||(22096394-22096481)
chr4 (84-124)||(52366212-52366252)
chr4 (24-75)||(26885391-26885442)
chr4 (532-574)||(14638968-14639010)
chr4 (90-124)||(19687650-19687684)
chr4 (84-125)||(8716558-8716599)
chr4 (94-135)||(31261764-31261805)
chr4 (24-125)||(38690670-38690770)
chr4 (36-125)||(48404140-48404228)
chr4 (532-572)||(3811984-3812024)
[»] chr1 (24 HSPs)
chr1 (24-124)||(14262712-14262811)
chr1 (36-119)||(8893870-8893952)
chr1 (24-125)||(24134615-24134715)
chr1 (24-125)||(50065014-50065114)
chr1 (27-136)||(52164365-52164473)
chr1 (26-125)||(3347696-3347794)
chr1 (24-125)||(10123044-10123143)
chr1 (24-125)||(19424050-19424150)
chr1 (24-125)||(49619976-49620076)
chr1 (24-120)||(48497204-48497299)
chr1 (36-134)||(12148576-12148673)
chr1 (39-125)||(35527342-35527426)
chr1 (40-125)||(34702320-34702404)
chr1 (24-125)||(40061447-40061547)
chr1 (24-125)||(43109229-43109329)
chr1 (25-125)||(50011511-50011610)
chr1 (36-134)||(7438616-7438713)
chr1 (24-135)||(23368723-23368833)
chr1 (24-119)||(25031488-25031582)
chr1 (27-125)||(30735832-30735929)
chr1 (36-74)||(35309778-35309816)
chr1 (84-134)||(47651867-47651917)
chr1 (84-133)||(22386286-22386335)
chr1 (24-120)||(50302842-50302937)
[»] chr2 (13 HSPs)
chr2 (27-125)||(3330195-3330292)
chr2 (36-125)||(6866512-6866600)
chr2 (27-124)||(42678318-42678414)
chr2 (27-117)||(17543084-17543173)
chr2 (24-125)||(33065248-33065348)
chr2 (24-125)||(34107499-34107598)
chr2 (24-135)||(18949676-18949785)
chr2 (24-120)||(41749956-41750050)
chr2 (523-569)||(16334755-16334801)
chr2 (27-120)||(31149096-31149187)
chr2 (84-125)||(16403529-16403570)
chr2 (36-125)||(29090420-29090507)
chr2 (25-125)||(19843355-19843454)
[»] chr7 (21 HSPs)
chr7 (24-125)||(31793472-31793572)
chr7 (24-125)||(40273825-40273925)
chr7 (36-125)||(36528222-36528310)
chr7 (24-125)||(48433701-48433801)
chr7 (24-116)||(4956083-4956174)
chr7 (23-120)||(24029994-24030090)
chr7 (27-125)||(46243295-46243392)
chr7 (27-125)||(3889794-3889892)
chr7 (27-125)||(15025160-15025257)
chr7 (27-117)||(38378231-38378320)
chr7 (84-125)||(1575698-1575739)
chr7 (36-125)||(33248805-33248893)
chr7 (83-120)||(34322073-34322110)
chr7 (36-125)||(42554638-42554726)
chr7 (24-117)||(43440701-43440793)
chr7 (24-134)||(27454006-27454116)
chr7 (52-133)||(3902293-3902372)
chr7 (95-125)||(37918684-37918714)
chr7 (27-125)||(46266672-46266769)
chr7 (36-125)||(44986598-44986686)
chr7 (25-133)||(3961400-3961507)
[»] chr6 (14 HSPs)
chr6 (24-125)||(6228251-6228351)
chr6 (24-125)||(17216962-17217062)
chr6 (24-135)||(31637338-31637448)
chr6 (24-125)||(18903358-18903458)
chr6 (24-125)||(24794886-24794986)
chr6 (24-120)||(20415553-20415648)
chr6 (84-133)||(1128469-1128518)
chr6 (36-125)||(19748103-19748190)
chr6 (24-125)||(7164699-7164798)
chr6 (38-125)||(4854311-4854397)
chr6 (90-125)||(21874277-21874312)
chr6 (24-82)||(9455885-9455943)
chr6 (36-134)||(30422111-30422208)
chr6 (84-125)||(15717063-15717104)
[»] chr5 (13 HSPs)
chr5 (24-125)||(17077365-17077465)
chr5 (24-125)||(31250151-31250251)
chr5 (24-125)||(38503248-38503348)
chr5 (24-125)||(43227870-43227970)
chr5 (41-125)||(15106895-15106978)
chr5 (24-120)||(33545378-33545472)
chr5 (478-574)||(37450196-37450292)
chr5 (90-120)||(15696216-15696246)
chr5 (24-125)||(4395842-4395942)
chr5 (94-131)||(7608123-7608160)
chr5 (84-125)||(43263217-43263258)
chr5 (93-125)||(13576327-13576359)
chr5 (84-120)||(42643853-42643889)
[»] chr3 (33 HSPs)
chr3 (24-125)||(47864640-47864740)
chr3 (24-125)||(50381718-50381818)
chr3 (24-136)||(39739267-39739378)
chr3 (24-121)||(27471512-27471608)
chr3 (38-125)||(46798586-46798672)
chr3 (59-125)||(8258156-8258221)
chr3 (27-125)||(29226330-29226427)
chr3 (24-125)||(32421352-32421452)
chr3 (40-117)||(1325338-1325415)
chr3 (36-106)||(44062045-44062113)
chr3 (24-125)||(2259161-2259260)
chr3 (27-120)||(9320953-9321045)
chr3 (24-125)||(27817059-27817158)
chr3 (87-119)||(16141406-16141438)
chr3 (541-572)||(23353885-23353916)
chr3 (541-572)||(23406734-23406765)
chr3 (541-572)||(23441865-23441896)
chr3 (541-572)||(23449255-23449286)
chr3 (541-572)||(23465388-23465419)
chr3 (541-572)||(23474397-23474428)
chr3 (43-125)||(25165444-25165526)
chr3 (24-75)||(29645818-29645869)
chr3 (24-111)||(31435492-31435578)
chr3 (538-572)||(23456016-23456050)
chr3 (51-125)||(38869209-38869282)
chr3 (83-133)||(42913444-42913494)
chr3 (84-125)||(34225199-34225240)
chr3 (541-569)||(21088560-21088588)
chr3 (532-572)||(23435444-23435484)
chr3 (84-120)||(30745219-30745255)
chr3 (84-120)||(33780312-33780348)
chr3 (84-124)||(45510788-45510828)
chr3 (27-75)||(50676861-50676909)
[»] scaffold0001 (1 HSPs)
scaffold0001 (24-125)||(419716-419816)
[»] scaffold0570 (1 HSPs)
scaffold0570 (532-572)||(9747-9787)
[»] scaffold0201 (1 HSPs)
scaffold0201 (532-572)||(13553-13593)
[»] scaffold0087 (1 HSPs)
scaffold0087 (24-75)||(44346-44397)
[»] scaffold0005 (1 HSPs)
scaffold0005 (532-574)||(178282-178324)
[»] scaffold0204 (1 HSPs)
scaffold0204 (93-125)||(10580-10612)
[»] scaffold0007 (1 HSPs)
scaffold0007 (83-135)||(146767-146819)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 243 - 639
Target Start/End: Original strand, 6097594 - 6098000
Alignment:
Q  243 tgtgactaattctcatcggctgctaaataaattacttacaaatatttaa----------aggaaagtaattaattacccgtatattgtagagtcctatcc 332  Q
    |||||||||||||||||||||| |||| ||||||| || || |||||||          ||||||||||||||||||||||| ||| | |||||| ||||    
T  6097594 tgtgactaattctcatcggctgttaaacaaattacctataattatttaagggtagtgaaaggaaagtaattaattacccgtagattctggagtcccatcc 6097693  T
Q  333 ggagatattggcgatctcagtgagagcagctttccattgagacactttgtcttcattgcttttgcgctctatctcataatttgcaaatggttccttgtaa 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||||||||||||||||    
T  6097694 ggagatattggcgatctcagtgagagcagctttccattgagacactttgtcttcattgctcttgcgatctatctggtaatttgcaaatggttccttgtaa 6097793  T
Q  433 cttcccgtctgatgacgtacatctgatggatcaattctatagcacacaggtataaccacttgatcatgaaattttctacattcgagtattttgaggagtt 532  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6097794 cttcccgtctgatgacgtacatctgatggatcaattctatagaacacaggtataaccacttgatcatgaaattttccacattcgagtattttgaggagtt 6097893  T
Q  533 catctaaacaccattttgaggaagcatagttttctgagaaaatcacgagagacatgtgtgattcttggattgcttgaacaagtgctggaccaacctcttc 632  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  6097894 catccaaacaccattttgaggaagcatagttttctgagaaaaccacgagagacatacgtgattcttggattgcttgaacaagtgctggaccaacctcttc 6097993  T
Q  633 tcctttg 639  Q
    |||||||    
T  6097994 tcctttg 6098000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 6097371 - 6097445
Alignment:
Q  136 tgaggatcaaattctttatcaagagtttttgcatacatgtattaacaaatattatttctagattaaccttgaaaa 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6097371 tgaggatcaaactctttatcaagagtttttgcatacatgtattaacaaatattttttctagattagccttgaaaa 6097445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 440 - 607
Target Start/End: Original strand, 6179771 - 6179938
Alignment:
Q  440 tctgatgacgtacatctgatggatcaattctatagcacacaggtataaccacttgatcatgaaattttctacattcgagtattttgaggagttcatctaa 539  Q
    |||||||||| |||| ||| ||||| ||  ||||| |||||||||| || || ||| |||||  |||||| ||||  ||||| | |||||||||||| ||    
T  6179771 tctgatgacgaacatgtgaaggatctatgttatagaacacaggtattactacctgaccatgatgttttctgcattgtagtatatggaggagttcatccaa 6179870  T
Q  540 acaccattttgaggaagcatagttttctgagaaaatcacgagagacatgtgtgattcttggattgctt 607  Q
     ||||| |||||||  |||||||||||||||||||  || |||||||| ||||| |||||||||||||    
T  6179871 gcaccactttgaggttgcatagttttctgagaaaactacaagagacatatgtgaatcttggattgctt 6179938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 38289226 - 38289326
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||| | ||||||||  ||||| ||||| |||||||||||||||||||||| |||||||| ||    
T  38289226 ggctagagaaattcaccttaaagatgaataagtggggtgtttgaggttcgaaccccgac-ccctgcacatattgtgcattatcccttaccaaatgagcta 38289324  T
Q  124 ag 125  Q
    ||    
T  38289325 ag 38289326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 470 - 618
Target Start/End: Original strand, 6047170 - 6047318
Alignment:
Q  470 tatagcacacaggtataaccacttgatcatgaaattttctacattcgagtattttgaggagttcatctaaacaccattttgaggaagcatagttttctga 569  Q
    ||||| ||||||||||||| |||||| |||||| |||| | ||||| |||||||||||||||||||  || ||||| |||||||  ||||| ||||  ||    
T  6047170 tatagaacacaggtataacaacttgaccatgaagttttttgcattcaagtattttgaggagttcattcaagcaccactttgaggttgcataatttttgga 6047269  T
Q  570 gaaaatcacgagagacatgtgtgattcttggattgcttgaacaagtgct 618  Q
    ||| |  || ||||| ||| |||| ||||||||||||| | ||||||||    
T  6047270 gaatacaacaagagatatgcgtgagtcttggattgcttcagcaagtgct 6047318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 4259963 - 4259863
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| | || ||||||| |||  ||| | ||||| |||||||||||||||||||||| |||||||||||    
T  4259963 ggctagagaaattcaccttaaagatgaataagtggggagtccggggttggaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagtta 4259865  T
Q  124 ag 125  Q
    ||    
T  4259864 ag 4259863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 41454818 - 41454918
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| |||| |||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  41454818 ggctagagaaattcacattaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 41454916  T
Q  124 ag 125  Q
    ||    
T  41454917 ag 41454918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 41845432 - 41845520
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||| ||||| | | ||||||||||||||||  |||| |||||| |||||||||||||||||||||| |||||||| ||||    
T  41845432 tcaccttaaagatgaataaatagggtgttcggggttcgaaccccga-tccctgcacatattgtgcattatcccttaccaaatgagctaag 41845520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 36103927 - 36104013
Alignment:
Q  38 accttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||| ||||||||| ||||| ||||||||||  ||| | ||||| |||||||||||||||||| ||| |||||||||||||    
T  36103927 accttaaagatgaataagtggggtgtttggggttcgaaccccggc-ccctgcacatattgtgcattatcctttaccaaatgagttaag 36104013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 1032674 - 1032574
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||  ||||||||||  ||  | ||||| |||||||||||||||||||||| |||||||| ||    
T  1032674 ggctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaaccccagc-ccctgcacatattgtgcattatcccttaccaaatgagcta 1032576  T
Q  124 ag 125  Q
    ||    
T  1032575 ag 1032574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 38544929 - 38545020
Alignment:
Q  37 caccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgt 130  Q
    |||||||||||||||||||||| ||||||||| ||||||  | || ||| || |||||||||||||||||||||| |||||||| |||| ||||    
T  38544929 caccttaaagataaataagtgg-gtgttcgggattcgaaccctga-tccatgcacatattgtgcattatcccttaccaaatgaggtaagctcgt 38545020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 34037942 - 34038039
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||| |||| |||||||| |||||||||  |||  ||| |||||| |||| | ||||| |||||||||| ||||||||||||||||| |||||||    
T  34037942 tagaaaaattcactttaaagatgaataagtgggatgtctgggattcgaactccgcc-ccctgcacatattgtgtattatcccttatcaaataagttaag 34038039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 593
Target Start/End: Original strand, 6188545 - 6188698
Alignment:
Q  440 tctgatgacgtacatctgatggatcaattctatagcacacaggtataaccacttgatcatgaaattttctacattcgagtattttgaggagttcatctaa 539  Q
    ||||||||||||||| ||||||||| ||  ||||| ||||||||||||| || ||  ||| || |||||| ||||  ||||| | || ||||||||| ||    
T  6188545 tctgatgacgtacatgtgatggatctatgttatagaacacaggtataactacatgtccattaagttttctgcattgaagtatgtggacgagttcatccaa 6188644  T
Q  540 acaccattttgaggaagcatagttttctgagaaaatcacgagagacatgtgtga 593  Q
     ||||| ||||| |  ||||||| || ||||||||  || |||||||| |||||    
T  6188645 gcaccactttgaagttgcatagtcttttgagaaaactacaagagacatatgtga 6188698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 36587657 - 36587741
Alignment:
Q  40 cttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||||||||| |||||||||||| |||  ||||| ||||  ||||||||||  ||||| |||| |||||||||||||    
T  36587657 cttaaagataaataagtggggtgttcggggttggaaccccgac-ccctacacatattgtgttttatctcttaccaaatgagttaag 36587741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 39104710 - 39104616
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| |||  |||||||||||| ||||||||| |||| |||||||||||  ||| | | ||| |||||||||||||||||||||| ||||||||    
T  39104710 ggctagagaaatccaccttaaagatgaataagtgg-gtgtccggggttcgaaccccggc-cgctgcacatattgtgcattatcccttaccaaatgag 39104616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 45536802 - 45536728
Alignment:
Q  44 aagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatga 119  Q
    ||||| ||||||||| |||| ||||||||||| |||| | ||||| ||| ||| ||||||||||||||||||||||    
T  45536802 aagatgaataagtggggtgtccggggttcgaactccggc-ccctgcacaaattttgcattatcccttatcaaatga 45536728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 3311544 - 3311435
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||||||| ||| ||| ||||| ||||||||| |||| |||||||||||  | || |||||| | | ||||| |||||||||||  |||||||||||    
T  3311544 ggctagaaaaattcatctttaagatgaataagtggggtgtccggggttcgaaccctga-tccctgcataaattgtacattatcccttgccaaatgagtta 3311446  T
Q  124 aggtcgtggga 134  Q
    || || |||||    
T  3311445 agctcatggga 3311435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 38064078 - 38063981
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||||||||| ||||||||| ||||  ||||||| ||  || | |||||| ||| |||||||||||||||||| ||||||| |||||    
T  38064078 tagagaaattcaccttaaagatgaataagtggggtgtctggggttc-aacccccagtccctgcacaaattgtgcattatcccttaccaaatgaattaag 38063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 22652787 - 22652687
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||| || || ||||| ||| |||| |||||||||||  ||| | ||||| ||| ||| ||||||||||||||||||||||| ||    
T  22652787 ggctagagaaattcacctttaacatgaataattggggtgtccggggttcgaacaccggc-ccctgcacaaattatgcattatcccttatcaaatgagcta 22652689  T
Q  124 ag 125  Q
    ||    
T  22652688 ag 22652687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 5904366 - 5904460
Alignment:
Q  25 gctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    |||||| ||| ||| ||||||||| |||||||||  ||| |||||||||||  ||| | ||||| |||||||||||||||||  ||| ||||||||    
T  5904366 gctagagaaattcatcttaaagatgaataagtgggatgtccggggttcgaaccccgtc-ccctgcacatattgtgcattatcttttaccaaatgag 5904460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 16973067 - 16973028
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  16973067 ccctgcacatattgtgcattatcccttaacaaatgagtta 16973028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 29114147 - 29114096
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtgggaa 135  Q
    ||||| ||| ||||||||||||||||||||||||||| |||| || ||||||    
T  29114147 ccctgcacaaattgtgcattatcccttatcaaatgagctaagttcatgggaa 29114096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 8350521 - 8350440
Alignment:
Q  43 aaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||| ||||||||| |||| || |||||||| |||| | ||||| | |||||||| |||||| |||| |||||||||||||    
T  8350521 aaagatgaataagtggggtgtccgaggttcgaactccggc-ccctgcatatattgtgtattatcacttaccaaatgagttaag 8350440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 19733063 - 19733160
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||||||||| ||||| |   ||||||||| ||||||  ||||| ||||| | ||||| |||||||||||||| |||||||| ||||    
T  19733063 tagagaaattcaccttaaagatgaataatttaggtgttcgggattcgaaccccgac-ccctgcatatattatgcattatcccttaccaaatgagctaag 19733160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 13906676 - 13906717
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| |||||||||||||||||||||| |||||||| ||||    
T  13906676 ccctgcacatattgtgcattatcccttaccaaatgagctaag 13906717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 40103559 - 40103526
Alignment:
Q  92 atattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||||||||||||||||||| ||||    
T  40103559 atattgtgcattatcccttatcaaatgagctaag 40103526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 16556555 - 16556446
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||  ||||| ||||| |||||||||||||||||||||| |||||||| ||    
T  16556555 ggctagagaaattcaccttaaagatgaataagtggggtgttcggggttcgaaccccgac-ccctgcacatattgtgcattatcccttaccaaatgagcta 16556457  T
Q  124 aggtcgtggga 134  Q
    || || |||||    
T  16556456 agctcatggga 16556446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 51974851 - 51974751
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| |||||||||||||||||||||||  ||| || ||||||||| ||||| ||||| |||||||||||||||||||||| |||||||| ||    
T  51974851 ggctagataaattcaccttaaagataaataagtgggatgtccgaggttcgaatcccgac-ccctgcacatattgtgcattatcccttaccaaatgagcta 51974753  T
Q  124 ag 125  Q
    ||    
T  51974752 ag 51974751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 45847914 - 45848017
Alignment:
Q  21 aggggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    |||||||| | ||| ||||||||||||| ||||||||| |||| |||||||||||  |||| |||||| ||||||| |||||||||||||||||||||||    
T  45847914 aggggctaaagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccga-tccctgcacatattatgcattatcccttatcaaatgag 45848012  T
Q  121 ttaag 125  Q
     ||||    
T  45848013 ataag 45848017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 43362171 - 43362269
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtgggaa 135  Q
    ||||||||||||| ||||||||| |||| |||||||||||  ||||| ||||| | |||||||||||||||||||| |||||||| |||| || ||||||    
T  43362171 tcaccttaaagatgaataagtggggtgtccggggttcgaaccccgac-ccctgaatatattgtgcattatcccttagcaaatgagctaagctcatgggaa 43362269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 11491210 - 11491310
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| ||||||||||| |||| | ||||| ||| ||| ||||||||||||| ||||||||| ||    
T  11491210 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccggc-ccctgcacaaattatgcattatcccttgtcaaatgagcta 11491308  T
Q  124 ag 125  Q
    ||    
T  11491309 ag 11491310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 40406951 - 40407052
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||    ||||| |||||||||||||||||||||| |||||||| ||    
T  40406951 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaacccccggcccctgcacatattgtgcattatcccttaccaaatgagcta 40407050  T
Q  124 ag 125  Q
    ||    
T  40407051 ag 40407052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 36993145 - 36993035
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||| ||| |||| |||||||| ||  || || ||||  ||||||||||||||||||||||||||||||| ||    
T  36993145 ggctagagaaattcaccttaaagatgaataattggggtgtccggggttcaaaccccaac-cccttcacatattgtgcattatcccttatcaaatgagcta 36993047  T
Q  124 aggtcgtgggaa 135  Q
    || || ||||||    
T  36993046 agctcatgggaa 36993035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 46283224 - 46283126
Alignment:
Q  26 ctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | | ||| |||||||||||||||||||||| |||||||| ||||    
T  46283224 ctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-cgctgcacatattgtgcattatcccttaccaaatgaggtaag 46283126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 45355709 - 45355803
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||||| ||||  ||||||||||||||||||||||  |||||||    
T  45355709 ggctagagaaattcaccttaaagatgaataagtgg-gtgtccggggttcgaaccccgac-ccctacacatattgtgcattatcccttactaaatgag 45355803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 45369450 - 45369544
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||||| ||||  ||||||||||||||||||||||  |||||||    
T  45369450 ggctagagaaattcaccttaaagatgaataagtgg-gtgtccggggttcgaaccccgac-ccctacacatattgtgcattatcccttactaaatgag 45369544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 2832074 - 2832162
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||| ||||||||| ||||| ||||||||||  ||||| ||||| ||||||||||||| | |||||| || ||||| ||||    
T  2832074 tcaccttaaagatgaataagtggggtgtttggggttcgaaccccgac-ccctgcacatattgtgcatcaccccttaccagatgagctaag 2832162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 125
Target Start/End: Original strand, 35909024 - 35909120
Alignment:
Q  29 gaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaa-ttccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||| ||||||||||||||||||||||| ||||  ||| ||||||  |||||| ||||| | ||||||||||||||||||||  ||||||| ||||    
T  35909024 gaaaaattcaccttaaagataaataagtggggtgtctgggattcgaacctccgac-ccctgcatatattgtgcattatcccttacaaaatgagctaag 35909120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 42154670 - 42154570
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| | ||||||  |||| |||||||||||  ||||| | ||| |||||||||| ||||||||||| ||||| |||||    
T  42154670 ggctagagaaattcaccttaaagatgattaagtgaagtgtccggggttcgaaccccgac-ctctgcacatattgtgaattatcccttaccaaataagtta 42154572  T
Q  124 ag 125  Q
    ||    
T  42154571 ag 42154570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 50815811 - 50815711
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||| ||||| |||| |||| |||| |||||||||||  ||| | ||||| ||| |||||||||||||| |||||||||||| ||    
T  50815811 ggctagagaaattcacctttaagatgaatatgtggggtgtccggggttcgaaccccggc-ccctgcacaaattgtgcattatcctttatcaaatgagcta 50815713  T
Q  124 ag 125  Q
    ||    
T  50815712 ag 50815711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 23449063 - 23448985
Alignment:
Q  37 caccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaat 117  Q
    ||||||||| || ||||||||| ||||||||||||||||  || || ||||| |||||||||||||||||||||| |||||    
T  23449063 caccttaaa-atgaataagtggggtgttcggggttcgaaccccaac-ccctgcacatattgtgcattatcccttaccaaat 23448985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 27862842 - 27862922
Alignment:
Q  44 aagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| ||||||||| |||| |||||||||||  ||  | ||||| ||| ||||||||||||||||||||||||||| ||||    
T  27862842 aagatgaataagtggggtgtccggggttcgaaccccagc-ccctgcacaaattgtgcattatcccttatcaaatgagctaag 27862922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 43084551 - 43084451
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| ||   | || ||||||  ||||| |||| || |||||||||||||| ||||| |||||||||||    
T  43084551 ggctagagaaattcaccttaaagatgaataagtggggtaaccaggattcgaaccccgac-ccctatatatattgtgcattattccttaccaaatgagtta 43084453  T
Q  124 ag 125  Q
    ||    
T  43084452 ag 43084451  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 8716398 - 8716481
Alignment:
Q  41 ttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||||||||||| ||||   |||||||||    |||| | || ||||||||||||||||||||||||||||||| ||||    
T  8716398 ttaaagataaataagtggggtgtcgagggttcgaaccttgacttc-tgcacatattgtgcattatcccttatcaaatgagctaag 8716481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 22096394 - 22096481
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaa 124  Q
    |||||||||| || ||||||||| |||| ||| |||||||   || | ||||| |||||||||||||||||||||| ||||||| ||||    
T  22096394 tcaccttaaaaatgaataagtggggtgtccggagttcgaacctcggc-ccctgcacatattgtgcattatcccttaccaaatgaattaa 22096481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 52366252 - 52366212
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaa 124  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  52366252 ccctgcacatattgtgcattatcccttaccaaatgagttaa 52366212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 26885391 - 26885442
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaa 75  Q
    ||||||| |||  |||||||||||||||||||||| |||| |||||||||||    
T  26885391 ggctagagaaatccaccttaaagataaataagtggagtgtccggggttcgaa 26885442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 574
Target Start/End: Original strand, 14638968 - 14639010
Alignment:
Q  532 tcatctaaacaccattttgaggaagcatagttttctgagaaaa 574  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
T  14638968 tcatctaagcaccatgttgaggatgcatagttttctgagaaaa 14639010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 19687650 - 19687684
Alignment:
Q  90 acatattgtgcattatcccttatcaaatgagttaa 124  Q
    ||||||||| |||||||||||||||||||||||||    
T  19687650 acatattgtacattatcccttatcaaatgagttaa 19687684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 8716599 - 8716558
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| |||||||||||||||||||||| |||||||| ||||    
T  8716599 ccctgcacatattgtgcattatcccttaccaaatgagataag 8716558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 31261764 - 31261805
Alignment:
Q  94 attgtgcattatcccttatcaaatgagttaaggtcgtgggaa 135  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  31261764 attgtgcattatcccttatcaaatgaattaagctcatgggaa 31261805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 38690770 - 38690670
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| |||||||||||   ||||||||| |||| |||||||||||  ||||| ||||| | ||| | |||||||||||||| ||| |||| ||    
T  38690770 ggctagagaaattcaccttaaaggagaataagtggggtgtccggggttcgaaccccgac-ccctgcatataatatgcattatcccttaccaagtgagcta 38690672  T
Q  124 ag 125  Q
    ||    
T  38690671 ag 38690670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 48404140 - 48404228
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||| ||||||||  |||| |||||||||||  |||||  |||  ||||||| | ||||||| ||||||||||||| ||||    
T  48404140 tcaccttaaagatgaataagtgaggtgtccggggttcgaaccccgac-acctacacatattatacattatctcttatcaaatgagctaag 48404228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 3811984 - 3812024
Alignment:
Q  532 tcatctaaacaccattttgaggaagcatagttttctgagaa 572  Q
    |||||||||||||| | ||| ||||||||||||||||||||    
T  3811984 tcatctaaacaccaatgtgaagaagcatagttttctgagaa 3812024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 14262712 - 14262811
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||| | |||| |||||||||||  ||||| ||||| | ||||||||||||||||||||||||||||||||    
T  14262712 ggctagagaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgac-ccctgcatatattgtgcattatcccttatcaaatgagtta 14262810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 8893952 - 8893870
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatga 119  Q
    ||||||||||||| ||||||||| ||||| ||||||||||  ||||| |||||||||||||||||||||||||||| |||||||    
T  8893952 tcaccttaaagatgaataagtggggtgtttggggttcgaaccccgac-ccctgtacatattgtgcattatcccttaccaaatga 8893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 24134615 - 24134715
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  24134615 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 24134713  T
Q  124 ag 125  Q
    ||    
T  24134714 ag 24134715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 50065114 - 50065014
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| || | ||||||  |||  |||||| ||||||||||||||||||||||||||||||| ||    
T  50065114 ggctagagaaattcaccttaaagatgaataagtggggtgtccgagattcgaaccccgg-tccctgcacatattgtgcattatcccttatcaaatgagcta 50065016  T
Q  124 ag 125  Q
    ||    
T  50065015 ag 50065014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 52164365 - 52164473
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaagg 126  Q
    |||| ||| |||||||||| || ||||||||| |||| |||  ||||||  |||| |||||| ||||||||||||||||| |||| |||||||||||||     
T  52164365 tagagaaattcaccttaaaaattaataagtggggtgtccggaattcgaaccccga-tccctgcacatattgtgcattatctcttaccaaatgagttaagc 52164463  T
Q  127 tcgtgggaat 136  Q
    ||||||||||    
T  52164464 tcgtgggaat 52164473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 3347696 - 3347794
Alignment:
Q  26 ctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  |||||| |||| ||||||||| |||||||| ||| |||||| ||||||    
T  3347696 ctagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccgact-cctgaacatattgtacattatccattaccaaatgtgttaag 3347794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 10123044 - 10123143
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||| ||||||||||  ||||| ||||  |||||||||  ||||||||||| |||||||||||    
T  10123044 ggctagagaaattcaccttaaagatgaataagtggggtgtttggggttcgaaccccgac-ccctacacatattgt-aattatcccttaccaaatgagtta 10123141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 19424150 - 19424050
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||| | ||||||||| |||| |||||||||||  ||||| ||||| | ||| | ||||||||||||||||||||||| ||    
T  19424150 ggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccccgac-ccctgcatataatatgcattatcccttatcaaatgagcta 19424052  T
Q  124 ag 125  Q
    ||    
T  19424051 ag 19424050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 49620076 - 49619976
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| |||| |||||||| ||||||||| |||| ||||||  |||  ||||| ||||| |||||||||||||||||||||| |||||||| ||    
T  49620076 ggctagagaaattcactttaaagatgaataagtggggtgtccggggtctgaaccccgac-ccctgcacatattgtgcattatcccttaccaaatgagcta 49619978  T
Q  124 ag 125  Q
    ||    
T  49619977 ag 49619976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 48497204 - 48497299
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||| | ||||||||||| ||||| ||| |||| |||| |||||| |||| | ||||| |||||||||||||||||||||| ||||||||    
T  48497204 ggctagagaaatttaccttaaagatgaataaatggagtgtccgggattcgaactccggc-ccctgcacatattgtgcattatcccttaccaaatgag 48497299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 12148576 - 12148673
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggga 134  Q
    ||||||||||||| ||||||||| ||||  |||||| ||| |||||| ||||| ||||||||| ||||||| ||||| ||||||| |||| || |||||    
T  12148576 tcaccttaaagatgaataagtggggtgtctggggtttgaactccgac-ccctgcacatattgtacattatcgcttataaaatgagctaagctcatggga 12148673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 35527342 - 35527426
Alignment:
Q  39 ccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| |||||||||||||| ||||| ||||||| || |||||| ||||  |||||||||||||||||||||| |||||||| ||||    
T  35527342 ccttatagataaataagtggagtgtttggggttcaaactccgac-ccctc-acatattgtgcattatcccttaccaaatgagctaag 35527426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 34702320 - 34702404
Alignment:
Q  40 cttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||| ||||||||  |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||||    
T  34702320 cttaaagatgaataagtgaggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagctaag 34702404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 40061547 - 40061447
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| |||  |||||||||||| ||||||||| |||| ||| |||||||  ||  | |||| ||||||||||||| ||||||||| |||||||||||    
T  40061547 ggctagagaaatccaccttaaagatgaataagtggggtgtccggagttcgaaccccagc-ccctatacatattgtgcactatcccttaccaaatgagtta 40061449  T
Q  124 ag 125  Q
    ||    
T  40061448 ag 40061447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 43109229 - 43109329
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||| ||  |||| |||||||||||  ||| | ||||| ||||||| |||||||||||||| |||||||| ||    
T  43109229 ggctagagaaattcaccttaaagatgaataaatgaggtgtccggggttcgaaccccggc-ccctgcacatattttgcattatcccttaccaaatgagcta 43109327  T
Q  124 ag 125  Q
    ||    
T  43109328 ag 43109329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 50011610 - 50011511
Alignment:
Q  25 gctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaa 124  Q
    |||||| ||| ||||||||||||| |||||||||  |||  ||||||||||  ||  | ||||| |||||||||||||||||||||| |||||||| |||    
T  50011610 gctagagaaattcaccttaaagatgaataagtgggatgtctggggttcgaaccccagc-ccctgcacatattgtgcattatcccttaccaaatgagctaa 50011512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 7438713 - 7438616
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggga 134  Q
    ||||||| ||||| ||||||||| |||| ||| |||||||  ||||| ||||  ||| |||||||||||||||||| |||||||| |||| || |||||    
T  7438713 tcacctttaagatgaataagtggggtgtccggagttcgaaccccgac-ccctacacaaattgtgcattatcccttaccaaatgagctaagctcatggga 7438616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 23368723 - 23368833
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||| ||  | ||||||||| |||| |||||||||||   ||  |||||| ||| | ||||||||||||||||||||||||| ||    
T  23368723 ggctagataaattcacctttaatgtgaataagtggggtgtccggggttcgaacatcgg-tccctgcacaaaatgtgcattatcccttatcaaatgagcta 23368821  T
Q  124 aggtcgtgggaa 135  Q
    || || ||||||    
T  23368822 agctcatgggaa 23368833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 25031488 - 25031582
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatga 119  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||  ||||||  ||| | ||||| ||||||| ||||||||| |||| |||||||    
T  25031488 ggctagagaaattcaccttaaagatgaataagtggggtgtccggaattcgaaccccggc-ccctgcacatattatgcattatctcttaccaaatga 25031582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 30735929 - 30735832
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| |||||||  |||| ||||||||  |||| | |||||| || |||| | ||||| ||| |||||||||||||||||| |||||||||||||    
T  30735929 tagagaaattcacctttgagatgaataagtgtggtgtccagggttcaaactccggc-ccctgcacaaattgtgcattatcccttaccaaatgagttaag 30735832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 35309816 - 35309778
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcga 74  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  35309816 tcaccttaaagatgaataagtggggtgttcggggttcga 35309778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 47651917 - 47651867
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggga 134  Q
    ||||| |||||||||||||||||||||| |||||||| |||| || |||||    
T  47651917 ccctgcacatattgtgcattatcccttaccaaatgagctaagctcatggga 47651867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 22386286 - 22386335
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggg 133  Q
    ||||| ||||||||||||| |||||||| |||||||| |||| |||||||    
T  22386286 ccctgcacatattgtgcataatcccttaccaaatgagctaagctcgtggg 22386335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 50302842 - 50302937
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||| ||||||||||||| ||||||| | |||| | |||||||||  ||  | | ||| ||||||| |||||||||||||| ||||||||    
T  50302842 ggctagagaaattcaccttaaagatgaataagtagagtgt-cagggttcgaaccccagccctctgcacatattatgcattatcccttaccaaatgag 50302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 3330195 - 3330292
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||||||||| ||||||||| |||| ||||||||||| |||||| | ||| ||||||||||||||||||||||  ||||||||||||    
T  3330195 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgac-ctctgcacatattgtgcattatcccttactaaatgagttaag 3330292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 6866600 - 6866512
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||||||||||||  |||| |||| |||||| ||||  ||| || |||||||||||||||||||||| |||||||||||||    
T  6866600 tcaccttaaagataaataagtgaggtgtccgggattcgaactccggttcc-tgcacatattgtgcattatcccttaccaaatgagttaag 6866512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 42678318 - 42678414
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaa 124  Q
    |||| ||| ||||||||||||| ||||||||| |||| ||||||||||| ||||| |||||   ||||||||||||||||||||| ||| | ||||||    
T  42678318 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccga-tccctacgcatattgtgcattatcccttaccaagtaagttaa 42678414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 17543084 - 17543173
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaat 117  Q
    |||| ||| |||| |||||||| ||||||||| |||| ||| ||||||| |||| | ||||| |||||||||||||||||||||| |||||    
T  17543084 tagagaaagtcacattaaagatgaataagtggggtgtccggcgttcgaactccggc-ccctgcacatattgtgcattatcccttaccaaat 17543173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 33065248 - 33065348
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||| | |||||||| |||||||  ||||| ||||  ||| |||||||||||||||||  |||||||| ||    
T  33065248 ggctagagaaattcaccttaaagatgaataagtagggtgttcggagttcgaaccccgac-ccctacacacattgtgcattatcccttgccaaatgagcta 33065346  T
Q  124 ag 125  Q
    ||    
T  33065347 ag 33065348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 34107598 - 34107499
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||| || |||  | ||| ||||| |||||||||||||||||||||| |||||||| ||    
T  34107598 ggctagagaaattcaccttaaagatgaataagtggggtgtccgggttt-gaaccctgac-ccctgcacatattgtgcattatcccttaccaaatgagcta 34107501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 18949676 - 18949785
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| |||| ||||| || ||||||| | |||||| |||||||||  ||||| ||||| ||||||  |||||||||| |||||||||||||||    
T  18949676 ggctagagaaattcacattaaa-atgaataagttgggtgttcagggttcgaaccccgac-ccctgcacatataatgcattatccgttatcaaatgagtta 18949773  T
Q  124 aggtcgtgggaa 135  Q
    || || ||||||    
T  18949774 agctcatgggaa 18949785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 41750050 - 41749956
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||| ||  ||||| ||||  ||| |||||||||||||||||  ||||||||    
T  41750050 ggctagagaaattcaccttaaagatgaataagtgg-gtgtccggggttcaaaccccgac-ccctacacacattgtgcattatcccttgccaaatgag 41749956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 569
Target Start/End: Complemental strand, 16334801 - 16334755
Alignment:
Q  523 ttgaggagttcatctaaacaccattttgaggaagcatagttttctga 569  Q
    |||| ||||||||  |||||||||||||| |||||||||||||||||    
T  16334801 ttgacgagttcattcaaacaccattttgaagaagcatagttttctga 16334755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 31149096 - 31149187
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    |||| ||| ||||||||||||| || |||||| ||||  ||||||||||   | ||  |||| |||||||||||||||||||||| ||||||||    
T  31149096 tagagaaattcaccttaaagattaaaaagtggggtgtctggggttcgaacctcaac--cctgcacatattgtgcattatcccttaccaaatgag 31149187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 16403570 - 16403529
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| |||||||||||||||||||||| |||||||| ||||    
T  16403570 ccctgcacatattgtgcattatcccttaccaaatgagctaag 16403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 29090507 - 29090420
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||| ||||||||  |||| ||||||||||| |||| | ||||||| |||   ||||||||||||||||| ||||| ||||    
T  29090507 tcaccttaaagatgaataagtgaggtgtccggggttcgaactccggc-ccctgtatata-aatgcattatcccttatcatatgagctaag 29090420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 19843355 - 19843454
Alignment:
Q  25 gctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaa 124  Q
    |||||| ||| ||||||||||||| ||||||||  ||||   |||||||||  | ||| ||||| ||||||||| ||| ||||||||  |||||||||||    
T  19843355 gctagagaaattcaccttaaagatgaataagtgaggtgtctagggttcgaaccctgac-ccctgcacatattgtacatcatcccttacgaaatgagttaa 19843453  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 31793572 - 31793472
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| |||  |||||||||||| ||||||||| |||| |||||||||||  ||||| ||||| |||||||||||||||||||||| |||||||| ||    
T  31793572 ggctagagaaatccaccttaaagatgaataagtggggtgtccggggttcgaaccccgac-ccctgcacatattgtgcattatcccttaacaaatgagcta 31793474  T
Q  124 ag 125  Q
    ||    
T  31793473 ag 31793472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 40273925 - 40273825
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  40273925 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 40273827  T
Q  124 ag 125  Q
    ||    
T  40273826 ag 40273825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 36528222 - 36528310
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||| || |||| ||||  ||| ||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||||    
T  36528222 tcaccttaaaaatgaataggtgggatgtccggggttcgaactccgac-ccctatacatattgtgcattatcccttaccaaatgagttaag 36528310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 48433701 - 48433801
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| ||||||| |||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  48433701 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggtttgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 48433799  T
Q  124 ag 125  Q
    ||    
T  48433800 ag 48433801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 4956083 - 4956174
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaa 116  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| | |||||||||  ||||| ||||| |||||||||||||||||||||| ||||    
T  4956083 ggctagagaaattcaccttaaagatgaataagtggggtgtccagggttcgaaccccgac-ccctgcacatattgtgcattatcccttaccaaa 4956174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 24030090 - 24029994
Alignment:
Q  23 gggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    |||||||| ||| ||||||||||||| ||||| ||| ||||  ||||||||||  ||| | ||||  |||||||||||||||||||||||||||||||    
T  24030090 gggctagagaaattcaccttaaagatgaataaatggggtgtctggggttcgaaccccggc-ccctacacatattgtgcattatcccttatcaaatgag 24029994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 46243392 - 46243295
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||||||| | ||||||||| |||||||| ||||||| ||||| ||||| || ||| | |||||||||||||| |||||||| ||||    
T  46243392 tagagaaattcaccttaaaggtgaataagtggggtgttcggagttcgaactccga-tccctatatataatatgcattatcccttaccaaatgagctaag 46243295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 3889794 - 3889892
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||| ||||| ||||||||| |||| |||||||||||  | | | ||||| | ||||||| ||||||||||| ||||||||| ||||    
T  3889794 tagagaaattcacctttaagatgaataagtggggtgtccggggttcgaaccctggccccctgcatatattgtacattatcccttgtcaaatgagctaag 3889892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 15025257 - 15025160
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||||||| | ||||||||| |||||||||||| |||  ||| | ||||||| | | | |||||||||||||| |||||||||||||    
T  15025257 tagagaaattcaccttaaaggtgaataagtggggtgttcggggtttgaaccccggc-ccctgtataaaatatgcattatcccttaccaaatgagttaag 15025160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 38378320 - 38378231
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaat 117  Q
    |||| ||| |||||||||| || ||||||||| |||| |||||||| ||  ||| | ||||| |||||||||||||||||||||| |||||    
T  38378320 tagagaaattcaccttaaaaatgaataagtggggtgtccggggttcaaaccccggc-ccctgcacatattgtgcattatcccttaccaaat 38378231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 1575739 - 1575698
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  1575739 ccctgtacatattgtgtattatcccttaccaaatgagttaag 1575698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 33248805 - 33248893
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||| ||||||| | |||| |||||||||||  ||||| | ||| | ||||||||||| |||||||| |||||||| ||||    
T  33248805 tcaccttaaagatgaataagtagggtgtccggggttcgaaccccgac-ctctgcatatattgtgcatcatcccttaccaaatgagctaag 33248893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 34322073 - 34322110
Alignment:
Q  83 tccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    |||||| |||||||||||||||||||||||||||||||    
T  34322073 tccctgcacatattgtgcattatcccttatcaaatgag 34322110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 42554726 - 42554638
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| ||||||| ||||||| | || | |||||||||||  || || ||||| |||||||||||||||||||||| |||||||| ||||    
T  42554726 tcaccataaagatgaataagtcgggtatccggggttcgaaccccaac-ccctgcacatattgtgcattatcccttaccaaatgagctaag 42554638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 43440793 - 43440701
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaat 117  Q
    ||||||| ||| ||||||||||||| ||||||||| ||||  ||  ||||||  ||||| | ||| |||||||||||||||||||||| |||||    
T  43440793 ggctagagaaattcaccttaaagatgaataagtggggtgtctggaattcgaaccccgac-ctctgcacatattgtgcattatcccttaccaaat 43440701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 27454116 - 27454006
Alignment:
Q  24 ggctagaaaaaatcacctta-aagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtt 122  Q
    ||||||| ||| |||||||  ||||| ||||||||| |||| || ||||||||   |||| ||||| ||| |||||||||||||||||| |||||||| |    
T  27454116 ggctagagaaattcaccttttaagatgaataagtggggtgtccgaggttcgaacctcgac-ccctgcacaaattgtgcattatcccttaccaaatgagct 27454018  T
Q  123 aaggtcgtggga 134  Q
    ||| || |||||    
T  27454017 aagctcatggga 27454006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 3902293 - 3902372
Alignment:
Q  52 taagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggg 133  Q
    ||||||| ||| ||||||||||||  ||| |  |||| ||||||| |||||||||||||| |||||||| |||| |||||||    
T  3902293 taagtggggtgatcggggttcgaaccccggc--cctgcacatattttgcattatcccttaccaaatgagctaagctcgtggg 3902372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 37918714 - 37918684
Alignment:
Q  95 ttgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||||||||||||||||||||||||    
T  37918714 ttgtgcattatcccttatcaaatgagttaag 37918684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 46266769 - 46266672
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||| ||||| |||||||||  |||||  ||||||||  ||| | ||| | ||| |||||||||||||||||| |||||||||||||    
T  46266769 tagataaattcacctttaagatgaataagtgggatgttcaaggttcgaaccccgtccccc-gcacaaattgtgcattatcccttaccaaatgagttaag 46266672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 44986686 - 44986598
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||| |||||  |||||||| ||||| ||||||||||| ||| | | ||| ||  |||||||||||||||||| |||||||| ||||    
T  44986686 tcacctttaagatggataagtggggtgtttggggttcgaatcccggc-cactgcactaattgtgcattatcccttaccaaatgagctaag 44986598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 3961400 - 3961507
Alignment:
Q  25 gctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaa 124  Q
    |||||| ||| ||||||| || || |||||||||  ||| |||||||||||  ||| | | ||| ||| |||||||||||||| ||| ||||||||||||    
T  3961400 gctagagaaattcacctttaaaatgaataagtgggatgtccggggttcgaaccccggc-ctctgcacaaattgtgcattatcctttaccaaatgagttaa 3961498  T
Q  125 ggtcgtggg 133  Q
      |||||||    
T  3961499 actcgtggg 3961507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 6228251 - 6228351
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  6228251 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 6228349  T
Q  124 ag 125  Q
    ||    
T  6228350 ag 6228351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 17217062 - 17216962
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| ||| ||||||| |||||| ||||  ||||||| |||||||||||||| |||||||| ||    
T  17217062 ggctagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaactccgac-ccctacacatattatgcattatcccttaccaaatgagcta 17216964  T
Q  124 ag 125  Q
    ||    
T  17216963 ag 17216962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 31637448 - 31637338
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| |||||||||| |||||||||| | |||| || || |||||  ||||| ||||| | ||||||||||||||||| || |||||||||||    
T  31637448 ggctagagaaattcaccttaaaaataaataagtagggtgtccgaggctcgaaccccgac-ccctgcaaatattgtgcattatcccataccaaatgagtta 31637350  T
Q  124 aggtcgtgggaa 135  Q
    || |||||||||    
T  31637349 agctcgtgggaa 31637338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 18903358 - 18903458
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||| ||||||||||  |||||||| ||    
T  18903358 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgtattatcccttgccaaatgagcta 18903456  T
Q  124 ag 125  Q
    ||    
T  18903457 ag 18903458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 24794886 - 24794986
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||| |||||| || |||||||||  ||| |||||||||||| || || ||||| |||||||||||||||||||||| |||||||| ||    
T  24794886 ggctagagaaattcatcttaaatatgaataagtgggatgtccggggttcgaatcccaac-ccctgcacatattgtgcattatcccttaccaaatgagcta 24794984  T
Q  124 ag 125  Q
    ||    
T  24794985 ag 24794986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 20415553 - 20415648
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  | | | ||||| ||||||||||||||||||||||  |||||||    
T  20415553 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccctggc-ccctgcacatattgtgcattatcccttacaaaatgag 20415648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 1128469 - 1128518
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggg 133  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  1128469 ccctgcacatattatgcattatcccttatcaaatgagttaaggtcatggg 1128518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 19748190 - 19748103
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||| || ||||||||| |||| || ||||||||  || | |||||| |||||||||||||||||||||| |||||||| ||||    
T  19748190 tcaccttaaa-atgaataagtggggtgtccgtggttcgaaccccaa-tccctgcacatattgtgcattatcccttaccaaatgagctaag 19748103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 7164798 - 7164699
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatat-tgtgcattatcccttatcaaatgagtt 122  Q
    ||||||| ||| ||||||||||| | ||||||||| ||| |||||||||||| |||| | ||   |||||||   ||||||||||||||||||||||| |    
T  7164798 ggctagagaaattcaccttaaaggtgaataagtggggtggtcggggttcgaactccggcccc---tacatataaatgcattatcccttatcaaatgagct 7164702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 4854311 - 4854397
Alignment:
Q  38 accttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| ||| ||||| |||||||||||  |||||||| ||||    
T  4854311 accttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacacattgtacattatcccttgccaaatgagctaag 4854397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 21874277 - 21874312
Alignment:
Q  90 acatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||||||||||||||| |||||||||||||    
T  21874277 acatattgtgcattatcccttaccaaatgagttaag 21874312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 9455943 - 9455885
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgac 82  Q
    ||||||||||| ||| ||||||| | ||||||||| ||||| |||||||||| ||||||    
T  9455943 ggctagaaaaattcaacttaaaggtgaataagtggggtgtttggggttcgaactccgac 9455885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 30422111 - 30422208
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggga 134  Q
    |||||||||| |||||||| ||  |||| ||| |||||||  | ||| ||||  ||||||||| |||||||||||| ||||||||||||| || |||||    
T  30422111 tcaccttaaaaataaataaatgtggtgtccggagttcgaacccggac-ccctacacatattgtacattatcccttaccaaatgagttaagctcatggga 30422208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 15717063 - 15717104
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| |||||||||||||||||||||| |||||||| ||||    
T  15717063 ccctgcacatattgtgcattatcccttaccaaatgagctaag 15717104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 17077465 - 17077365
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||| ||||| ||||||||| |||| |||||||||||| ||||| ||||| ||| |||||||||||||||||| |||||||| ||    
T  17077465 ggctagataaattcacctttaagatgaataagtggggtgtccggggttcgaatcccgac-ccctgcacaaattgtgcattatcccttaccaaatgagcta 17077367  T
Q  124 ag 125  Q
    ||    
T  17077366 ag 17077365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 31250251 - 31250151
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  31250251 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 31250153  T
Q  124 ag 125  Q
    ||    
T  31250152 ag 31250151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 38503248 - 38503348
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  38503248 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 38503346  T
Q  124 ag 125  Q
    ||    
T  38503347 ag 38503348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 43227970 - 43227870
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  43227970 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 43227872  T
Q  124 ag 125  Q
    ||    
T  43227871 ag 43227870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 15106895 - 15106978
Alignment:
Q  41 ttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||| ||||||||| |||| |||||||||||  ||||| | ||| ||| |||||||||||||||||| ||||| |||||||    
T  15106895 ttaaagatgaataagtggggtgtccggggttcgaaccccgac-ctctgcacaaattgtgcattatcccttaccaaataagttaag 15106978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 33545378 - 33545472
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||| ||||||||||||| |||||| || |||| || ||||| || |||||| ||||| ||||||||||||||||||| || ||||||||    
T  33545378 ggctagagaaattcaccttaaagatgaataagggg-gtgtccgaggttcaaactccgac-ccctgcacatattgtgcattatcccatagcaaatgag 33545472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 574
Target Start/End: Complemental strand, 37450292 - 37450196
Alignment:
Q  478 acaggtataaccacttgatcatgaaattttctacattcgagtattttgaggagttcatctaaacaccattttgaggaagcatagttttctgagaaaa 574  Q
    ||||||||||| | |||| |||||  ||||||||||||||| | ||||| |||||| || |||||||||||||| | |||| | ||||| |||||||    
T  37450292 acaggtataacaatttgaccatgatcttttctacattcgagcactttgacgagttcttccaaacaccattttgatgtagcaaaattttcagagaaaa 37450196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 90 - 120
Target Start/End: Complemental strand, 15696246 - 15696216
Alignment:
Q  90 acatattgtgcattatcccttatcaaatgag 120  Q
    |||||||||||||||||||||||||||||||    
T  15696246 acatattgtgcattatcccttatcaaatgag 15696216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 4395842 - 4395942
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||| ||| ||||  |||||||||| |||| | ||||| ||| ||| |||||||||  ||  |||||||||||    
T  4395842 ggctagagaaattcaccttaaagatgaataaatggggtgtcaggggttcgaactccggc-ccctgcacacattatgcattatcatttgccaaatgagtta 4395940  T
Q  124 ag 125  Q
    ||    
T  4395941 ag 4395942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 7608123 - 7608160
Alignment:
Q  94 attgtgcattatcccttatcaaatgagttaaggtcgtg 131  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  7608123 attgtgcattatcctttatcaaatgagttaagctcgtg 7608160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 43263258 - 43263217
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||| |||||||||||| |||| |||||||||||||    
T  43263258 ccctgtacatgttgtgcattatctcttaccaaatgagttaag 43263217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 13576359 - 13576327
Alignment:
Q  93 tattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||||||||| |||||||||||||    
T  13576359 tattgtgcattatcccttaccaaatgagttaag 13576327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 42643853 - 42643889
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  42643853 ccctgcacatattgtgcattatcccttaccaaatgag 42643889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 47864740 - 47864640
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  || || ||||| |||||||||||||||||||||| |||||||| ||    
T  47864740 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccaac-ccctgcacatattgtgcattatcccttaccaaatgagcta 47864642  T
Q  124 ag 125  Q
    ||    
T  47864641 ag 47864640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 50381818 - 50381718
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||| ||||||  ||||| ||||| | |||||||||||||||||||| |||||||||||    
T  50381818 ggctagagaaattcaccttaaagatgaataagtggggtgtccgggattcgaaccccgac-ccctgcatatattgtgcattatcccttaccaaatgagtta 50381720  T
Q  124 ag 125  Q
    ||    
T  50381719 ag 50381718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 39739378 - 39739267
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||  |||| |||||||||||  || | |||||| |||||||||||||||||||||| |||||||| ||    
T  39739378 ggctagagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaaccccaa-tccctgcacatattgtgcattatcccttaccaaatgagcta 39739280  T
Q  124 aggtcgtgggaat 136  Q
    || || |||||||    
T  39739279 agctcatgggaat 39739267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 27471608 - 27471512
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagt 121  Q
    ||||||| ||| | ||||||||||| ||||||||| |||| |||||||||||  || || ||||||||||||| |||||||||||||| |||||||||    
T  27471608 ggctagagaaatttaccttaaagatgaataagtggggtgtccggggttcgaaccccaac-ccctgtacatattatgcattatcccttaccaaatgagt 27471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 46798672 - 46798586
Alignment:
Q  38 accttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||| ||||||||| |||| | |||||||||| ||| | ||||| |||||||||||||||||||| | |||||||||||||    
T  46798672 accttaaagatgaataagtggggtgtccagggttcgaatcccggc-ccctgcacatattgtgcattatccctcaccaaatgagttaag 46798586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 8258221 - 8258156
Alignment:
Q  59 tgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||| || ||| |||||||||||||    
T  8258221 tgtgttcggggttcgaactccgac-ccctgcacatattgtgcattaaccattaccaaatgagttaag 8258156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 29226427 - 29226330
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| ||||||||||  |||||||||| |||||||| ||||    
T  29226427 tagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccggc-ccctgcacatattgtgtgttatcccttaccaaatgagctaag 29226330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 32421452 - 32421352
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||||||| ||| ||||||||| ||||||||| | ||||| ||||||||  ||||| ||||| | ||||| |||||||||||||| || ||||| ||    
T  32421452 ggctagaaaaattcatcttaaagatgaataagtggggagttcgaggttcgaaccccgac-ccctgcatatattatgcattatcccttaccagatgagcta 32421354  T
Q  124 ag 125  Q
    ||    
T  32421353 ag 32421352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 1325338 - 1325415
Alignment:
Q  40 cttaaagataaataagtggtg-tgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaat 117  Q
    ||||||||| ||||| ||| | ||| |||||||||||| |||| |||||||| |||||||||||||||||||| |||||    
T  1325338 cttaaagatgaataaatgggggtgtccggggttcgaatcccga-tccctgtatatattgtgcattatcccttaccaaat 1325415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 44062045 - 44062113
Alignment:
Q  36 tcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatc 106  Q
    ||||||||||||| ||||||||| ||| |||||||||||| |||| | ||||| |||||||||||||||||    
T  44062045 tcaccttaaagatgaataagtggggtg-tcggggttcgaactccggc-ccctgcacatattgtgcattatc 44062113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 2259260 - 2259161
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| | ||||||||||| ||||||| | ||||  |||||| ||| |||| | ||||| |||||||||||||||||||||| |||||||| ||    
T  2259260 ggctagataaatttaccttaaagatgaataagtag-gtgtctggggtttgaactccggc-ccctgcacatattgtgcattatcccttaccaaatgagcta 2259163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 9320953 - 9321045
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    |||| ||| ||| ||| ||||| ||||||||| ||||||||| ||||||  || || ||||| ||| ||||| |||||||||||||||||||||    
T  9320953 tagagaaattcatctttaagatgaataagtggggtgttcgggtttcgaaccccaac-ccctgcacaaattgtacattatcccttatcaaatgag 9321045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 27817059 - 27817158
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||| ||||||||| ||||| ||| |||| |||| |||||| |||| | ||||| ||| |||||||||||||||||| |||||||| ||    
T  27817059 ggctagagaaattcaacttaaagatgaataaatggggtgtccggg-ttcgaactccggc-ccctgcacaaattgtgcattatcccttaccaaatgaggta 27817156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 16141406 - 16141438
Alignment:
Q  87 tgtacatattgtgcattatcccttatcaaatga 119  Q
    |||||||||||||||||||||||||||||||||    
T  16141406 tgtacatattgtgcattatcccttatcaaatga 16141438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 572
Target Start/End: Original strand, 23353885 - 23353916
Alignment:
Q  541 caccattttgaggaagcatagttttctgagaa 572  Q
    ||||||||||||||||||||||||||||||||    
T  23353885 caccattttgaggaagcatagttttctgagaa 23353916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 572
Target Start/End: Original strand, 23406734 - 23406765
Alignment:
Q  541 caccattttgaggaagcatagttttctgagaa 572  Q
    ||||||||||||||||||||||||||||||||    
T  23406734 caccattttgaggaagcatagttttctgagaa 23406765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 572
Target Start/End: Original strand, 23441865 - 23441896
Alignment:
Q  541 caccattttgaggaagcatagttttctgagaa 572  Q
    ||||||||||||||||||||||||||||||||    
T  23441865 caccattttgaggaagcatagttttctgagaa 23441896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 572
Target Start/End: Original strand, 23449255 - 23449286
Alignment:
Q  541 caccattttgaggaagcatagttttctgagaa 572  Q
    ||||||||||||||||||||||||||||||||    
T  23449255 caccattttgaggaagcatagttttctgagaa 23449286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 572
Target Start/End: Original strand, 23465388 - 23465419
Alignment:
Q  541 caccattttgaggaagcatagttttctgagaa 572  Q
    ||||||||||||||||||||||||||||||||    
T  23465388 caccattttgaggaagcatagttttctgagaa 23465419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 541 - 572
Target Start/End: Original strand, 23474397 - 23474428
Alignment:
Q  541 caccattttgaggaagcatagttttctgagaa 572  Q
    ||||||||||||||||||||||||||||||||    
T  23474397 caccattttgaggaagcatagttttctgagaa 23474428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 25165526 - 25165444
Alignment:
Q  43 aaagataaataagtggtg-tgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||| ||||||||| | ||| |||||||||||  |||  |||||| |||||||||||||||||||||| |||||||| ||||    
T  25165526 aaagatgaataagtgggggtgtccggggttcgaaccccgg-tccctgcacatattgtgcattatcccttaccaaatgagctaag 25165444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 29645818 - 29645869
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaa 75  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||    
T  29645818 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaa 29645869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 31435492 - 31435578
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatccctta 111  Q
    ||||||| ||| ||||||||||||| |||||||||  ||| || ||||||||  || || ||||  ||||||||||||||||||||||    
T  31435492 ggctagagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaaccccaac-ccctacacatattgtgcattatccctta 31435578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 572
Target Start/End: Original strand, 23456016 - 23456050
Alignment:
Q  538 aaacaccattttgaggaagcatagttttctgagaa 572  Q
    |||||||||||||||||||| ||||||||||||||    
T  23456016 aaacaccattttgaggaagcgtagttttctgagaa 23456050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 38869209 - 38869282
Alignment:
Q  51 ataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||| ||||||||||||||||  ||||| ||||| |  |||| |||||||||||||| ||| |||||||||    
T  38869209 ataagtggcgtgttcggggttcgaaccccgac-ccctgcatgtattatgcattatcccttaccaagtgagttaag 38869282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 42913444 - 42913494
Alignment:
Q  83 tccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtggg 133  Q
    |||||| |||||||||||||| ||||||| |||||||| |||| |||||||    
T  42913444 tccctgcacatattgtgcattttcccttagcaaatgagctaagctcgtggg 42913494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 34225240 - 34225199
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaag 125  Q
    ||||| |||||||||||||||||||||| |||||||| ||||    
T  34225240 ccctgcacatattgtgcattatcccttaccaaatgagctaag 34225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 569
Target Start/End: Original strand, 21088560 - 21088588
Alignment:
Q  541 caccattttgaggaagcatagttttctga 569  Q
    |||||||||||||||||||||||||||||    
T  21088560 caccattttgaggaagcatagttttctga 21088588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 23435444 - 23435484
Alignment:
Q  532 tcatctaaacaccattttgaggaagcatagttttctgagaa 572  Q
    |||| ||| ||||||||||| ||||||||||||||||||||    
T  23435444 tcatttaagcaccattttgaagaagcatagttttctgagaa 23435484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 30745219 - 30745255
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  30745219 ccctgtatatattatgcattatcccttatcaaatgag 30745255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 33780348 - 33780312
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgag 120  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  33780348 ccctgtatatattgtgcattatcccttaccaaatgag 33780312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 45510828 - 45510788
Alignment:
Q  84 ccctgtacatattgtgcattatcccttatcaaatgagttaa 124  Q
    ||||| ||||||||| |||||| ||||||||||||||||||    
T  45510828 ccctgcacatattgtacattattccttatcaaatgagttaa 45510788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 50676861 - 50676909
Alignment:
Q  27 tagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaa 75  Q
    |||| ||| ||||||||||| | ||||||||| ||||||||||||||||    
T  50676861 tagagaaattcaccttaaaggtgaataagtggggtgttcggggttcgaa 50676909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 419816 - 419716
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaattccgactccctgtacatattgtgcattatcccttatcaaatgagtta 123  Q
    ||||||| ||| ||||||||||||| ||||||||| |||| |||||||||||  ||| | ||||| ||||||||| |||||||||||| |||||||| ||    
T  419816 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgttcattatcccttaccaaatgagcta 419718  T
Q  124 ag 125  Q
    ||    
T  419717 ag 419716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 572
Target Start/End: Complemental strand, 9787 - 9747
Alignment:
Q  532 tcatctaaacaccattttgaggaagcatagttttctgagaa 572  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  9787 tcatttaagcaccattttgaggaagcatagttttctgagaa 9747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 13553 - 13593
Alignment:
Q  532 tcatctaaacaccattttgaggaagcatagttttctgagaa 572  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  13553 tcatttaagcaccattttgaggaagcatagttttctgagaa 13593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 44346 - 44397
Alignment:
Q  24 ggctagaaaaaatcaccttaaagataaataagtggtgtgttcggggttcgaa 75  Q
    ||||||||||| ||||||||||  ||||||||||  ||||||||||||||||    
T  44346 ggctagaaaaattcaccttaaatgtaaataagtgaggtgttcggggttcgaa 44397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 574
Target Start/End: Complemental strand, 178324 - 178282
Alignment:
Q  532 tcatctaaacaccattttgaggaagcatagttttctgagaaaa 574  Q
    |||||||| |||||| ||||||| |||||||||||||||||||    
T  178324 tcatctaagcaccatgttgaggatgcatagttttctgagaaaa 178282  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 10612 - 10580
Alignment:
Q  93 tattgtgcattatcccttatcaaatgagttaag 125  Q
    |||||||||||||||||||||||||||| ||||    
T  10612 tattgtgcattatcccttatcaaatgagctaag 10580  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 146819 - 146767
Alignment:
Q  83 tccctgtacatattgtgcattatcccttatcaaatgagttaaggtcgtgggaa 135  Q
    |||||| |||||||||||||| ||||| |  |||||||||||| |||||||||    
T  146819 tccctgcacatattgtgcattgtccctcactaaatgagttaagctcgtgggaa 146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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