View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_56 (Length: 227)
Name: NF16758_low_56
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 44395854 - 44396053
Alignment:
| Q |
7 |
gaggagcagagagaggaaattgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgca |
106 |
Q |
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| T |
44395854 |
gaggaacagacagaggaaattgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgca |
44395953 |
T |
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| Q |
107 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggta |
206 |
Q |
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| T |
44395954 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggta |
44396053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 53395396 - 53395452
Alignment:
| Q |
107 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttg |
163 |
Q |
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| T |
53395396 |
acttttgatacattggctatggatcctatgaagaagaaagagattatggaagatttg |
53395452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 1800681 - 1800718
Alignment:
| Q |
77 |
tggagtcacattgtttttgaacatcctgcaacttttga |
114 |
Q |
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| T |
1800681 |
tggagtcacattgtttttgaacatcctgcgacttttga |
1800718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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