View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_57 (Length: 223)
Name: NF16758_low_57
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 26611945 - 26611756
Alignment:
| Q |
17 |
cagagaagaaaatagaatgactttgtaggtaggaggtaggaggtaatggtattcctcttggcctttatttatagtctcgaataagaannnnnnnnn-ctt |
115 |
Q |
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| T |
26611945 |
cagagaagaaaatagaatgactttgtaggtaggaggtaggaggtaatggtattcctcttggcctttatttatagtctcgaataagaattttttttttctt |
26611846 |
T |
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| Q |
116 |
tcaagagataattaaatttggtatattgtcaattatctgactcagtaaattgtcacttctgggaattgagaaccaggtcctcatacaact |
205 |
Q |
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| T |
26611845 |
tcaagagataattaaatttggtatattgtcaattatctgactcagtaaattgtcacttctgggaattgagaaccaggtcctcatacaact |
26611756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 26596721 - 26596679
Alignment:
| Q |
51 |
ggtaggaggtaatggtattcctcttggcctttatttatagtct |
93 |
Q |
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| T |
26596721 |
ggtaggaagtaatggtattcctcttgatctttatttatagtct |
26596679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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