View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16758_low_8 (Length: 575)
Name: NF16758_low_8
Description: NF16758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16758_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 136 - 564
Target Start/End: Complemental strand, 5812357 - 5811929
Alignment:
| Q |
136 |
gcggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagg |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812357 |
gcggtgatgcaaatcttccttgtccgtggagttggcattcaataaaaaaggacaataaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagg |
5812258 |
T |
|
| Q |
236 |
gcaagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaact |
335 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5812257 |
gcaagaagacaattctaaagacattgatgacctgaagcttcaagattttcttcaggtcatgcaacctcgcgcaaagtctaagctgtgggcaaacgaaact |
5812158 |
T |
|
| Q |
336 |
acagttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtag |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812157 |
acagttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtag |
5812058 |
T |
|
| Q |
436 |
ttggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacaga |
535 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812057 |
ttggattaccaaataatcccgaatctgacaagtcacgtgagcttaatcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacaga |
5811958 |
T |
|
| Q |
536 |
ttggtccgattctgaaagcagtgatgatg |
564 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
5811957 |
ttggtccgattctgaaagcagtgatgatg |
5811929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 5812562 - 5812440
Alignment:
| Q |
18 |
ataaaatgatatttatatcaatggaacttttgtataataattgattcttttatttttcgtagacacatttgttgccacctgtgtctactatactagaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5812562 |
ataaaatgatatttatatcaatggaacttttgtataataattgattcttttatttttcatagacacatttgttgccacctgtgtctactatactagaagg |
5812463 |
T |
|
| Q |
118 |
agccatgtaagtgcaaatgcggt |
140 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5812462 |
agccatgtaagtgcaaatgcggt |
5812440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 138 - 564
Target Start/End: Complemental strand, 37743925 - 37743499
Alignment:
| Q |
138 |
ggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggc |
237 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||| ||| || | ||||||||||||||||| | | |
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| T |
37743925 |
ggtgatgcaaatcttcctcgtccgtggagtcgacattcaacaaaaaaggacgataaagtgatcaccacagatgttagcaatcatgctagagctaaggaac |
37743826 |
T |
|
| Q |
238 |
aagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactac |
337 |
Q |
| |
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| ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||| | |
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| T |
37743825 |
atgaagacaattctatggacattgatgacccaaagcttcaagattttcttcaggtcatgcaacctcgggcaatgtctaagctgtgggcaaatgatacttc |
37743726 |
T |
|
| Q |
338 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagtt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||| |||||||||| ||||||||||||| ||| ||| |||| | |
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| T |
37743725 |
agttgtatccaatgatggtaacaaccaaccaacactgaataaggagaccgaaagtacattaattgcaaaccatcctatcttaagcgactcacatgtagat |
37743626 |
T |
|
| Q |
438 |
ggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagatt |
537 |
Q |
| |
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| ||||||||||| || |||| || ||||| ||||| |||||||||||||||| || |||||||| ||||||||||||| |||||||||||| || | |
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| T |
37743625 |
gagttaccaaataaccctaaatccgacaagtcgcgtgatattaagcatgatggagtaatttctgatatggattatttcaagagtaaagtgacaacggagt |
37743526 |
T |
|
| Q |
538 |
ggtccgattctgaaagcagtgatgatg |
564 |
Q |
| |
|
|||| |||||||||||||||||||||| |
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|
| T |
37743525 |
ggtctgattctgaaagcagtgatgatg |
37743499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 138 - 564
Target Start/End: Original strand, 38601196 - 38601622
Alignment:
| Q |
138 |
ggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggc |
237 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |||||| | || |||||||||||||||| || || |||||||||||||||||||| | |
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| T |
38601196 |
ggtgatgcaaatcttcctcgtccgtggagtcaacattcaacaaaaaaagtcaataaagtgatcaccccacatgttaacaatcatgctagagctaaaggac |
38601295 |
T |
|
| Q |
238 |
aagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactac |
337 |
Q |
| |
|
| ||||||||||||| ||| |||||||||| || |||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||| | |
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| T |
38601296 |
atgaagacaattctatggaaattgatgacccaaaacttcaagattttcttcaggtcatgcaacctcgggcaatgtctaagctgtgggcaaatgatacttc |
38601395 |
T |
|
| Q |
338 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagtt |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||| ||||||||||||| ||| |||||||| | |
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|
| T |
38601396 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccgaaaggacatcagttgcaaaccatcctatcttaagcgactcacaagtagat |
38601495 |
T |
|
| Q |
438 |
ggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagatt |
537 |
Q |
| |
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| ||||||||| || || |||| || ||| |||||||||||||||||||||||| || |||||||| ||||||||||||| ||| | ||||| || | |
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| T |
38601496 |
gaattaccaaaaaaccctaaatccgataagaaacgtgagcttaagcatgatggagtaatctctgatatggattatttcaagagcaaattaacaacggagt |
38601595 |
T |
|
| Q |
538 |
ggtccgattctgaaagcagtgatgatg |
564 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
38601596 |
ggtctgattctgaaagcagtgatgatg |
38601622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 138 - 564
Target Start/End: Complemental strand, 37765120 - 37764694
Alignment:
| Q |
138 |
ggtgatgcaaatcttccttgtccgtggagtcggcattcaataaaaaaggacagtaaagtgatcaccccaggtgcaaaaaatcatgctagagctaaagggc |
237 |
Q |
| |
|
|||||||||||||||||| | || |||||||| ||||||| |||||| |||| ||||| | ||||||||| || || ||| ||||||||||||||| | |
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|
| T |
37765120 |
ggtgatgcaaatcttcctcgaccatggagtcgacattcaagaaaaaaagacactaaagcgttcaccccagatgtcaacaattgtgctagagctaaaggac |
37765021 |
T |
|
| Q |
238 |
aagaagacaattctaaggacattgatgacctgaagcttcaagattttcttcagttcatgcaaccttgcgcaaagtctaagctgtgggcaaacgaaactac |
337 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||| || | |||| |||||||||||||||||| |||||| | |
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|
| T |
37765020 |
atgaagacaattctatggacattgatgacctgaagcttcgagaatttcttcaggtcatgcaatctcgagcaacgtctaagctgtgggcaaatgaaacttc |
37764921 |
T |
|
| Q |
338 |
agttgtatccaatgatggtaacaaccaagcaacattgaataaggagaccaacggtacatcaattgcaaactatcctatcttaagtgacagacaagtagtt |
437 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||| |||| | | |||||| |||||||| ||||||||||||| ||| |||| ||| | |
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|
| T |
37764920 |
agttgcatccaatgatggtagcaaccaagcaacattgaataagaagactgaaagaacatcagttgcaaaccatcctatcttaagcgactcacaattagat |
37764821 |
T |
|
| Q |
438 |
ggattaccaaataatcccgaatctgaaaagtcacgtgagcttaagcatgatggagtgatgtctgatattgattatttcaagaataaagtgacaacagatt |
537 |
Q |
| |
|
| ||||||||||| || |||| | ||| |||||||||||||| ||||||||| || ||||||| ||||||||||||| |||||||||||| || | |
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|
| T |
37764820 |
gagttaccaaataaccctaaatccaataagaaacgtgagcttaagcctgatggagtaatccctgatatggattatttcaagagtaaagtgacaacggagt |
37764721 |
T |
|
| Q |
538 |
ggtccgattctgaaagcagtgatgatg |
564 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
37764720 |
ggtctgattctgaaagcagtgatgatg |
37764694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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